Wall clock time and date at job start Mon Mar 30 2020 00:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99720 * 2 1 4 4 H 1.48502 * 109.46748 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47138 * 299.99731 * 3 2 1 6 6 H 1.48500 * 109.46940 * 60.00300 * 3 2 1 7 7 C 1.38811 * 120.00136 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00015 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00127 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00062 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.85081 * 336.19001 * 10 9 7 12 12 C 1.53776 * 113.69397 * 107.46265 * 10 9 7 13 13 C 1.53781 * 87.08478 * 139.99034 * 12 10 9 14 14 H 1.09004 * 113.68772 * 89.12856 * 13 12 10 15 15 C 1.52997 * 113.61697 * 220.01927 * 13 12 10 16 16 N 1.46495 * 109.47068 * 272.49757 * 15 13 12 17 17 C 1.34785 * 119.99874 * 179.97438 * 16 15 13 18 18 O 1.21613 * 119.99914 * 359.97438 * 17 16 15 19 19 C 1.47094 * 120.00036 * 180.02562 * 17 16 15 20 20 C 1.32998 * 120.00250 * 180.02562 * 19 17 16 21 21 C 1.51578 * 135.78342 * 180.02562 * 20 19 17 22 22 C 1.53846 * 86.75330 * 205.12782 * 21 20 19 23 23 C 1.51582 * 135.77899 * 359.96039 * 20 19 17 24 24 C 1.53777 * 113.61424 * 204.99985 * 10 9 7 25 25 H 0.96994 * 120.00285 * 0.02562 * 1 2 3 26 26 H 0.97002 * 119.99856 * 359.97438 * 9 7 2 27 27 H 1.09009 * 113.61360 * 25.44356 * 12 10 9 28 28 H 1.09000 * 113.61619 * 254.54337 * 12 10 9 29 29 H 1.09004 * 109.47139 * 152.49567 * 15 13 12 30 30 H 1.09003 * 109.46864 * 32.50056 * 15 13 12 31 31 H 0.96996 * 120.00450 * 359.97438 * 16 15 13 32 32 H 1.08002 * 120.00167 * 359.97438 * 19 17 16 33 33 H 1.08997 * 113.66822 * 90.66685 * 21 20 19 34 34 H 1.08994 * 113.66571 * 319.59590 * 21 20 19 35 35 H 1.09002 * 113.65420 * 89.68817 * 22 21 20 36 36 H 1.08998 * 113.65565 * 220.72523 * 22 21 20 37 37 H 1.09001 * 113.66228 * 40.40968 * 23 20 19 38 38 H 1.08998 * 113.66794 * 269.33705 * 23 20 19 39 39 H 1.08998 * 113.61926 * 105.38496 * 24 10 9 40 40 H 1.09005 * 113.69164 * 334.48876 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 1 3.0660 -3.5636 -0.4063 12 6 2.0002 -4.4038 1.3413 13 6 1.8495 -5.6984 0.5250 14 1 2.7996 -6.1645 0.2639 15 6 0.8472 -6.6873 1.1237 16 7 1.5293 -7.5460 2.0950 17 6 0.8398 -8.4990 2.7530 18 8 -0.3486 -8.6457 2.5407 19 6 1.5245 -9.3609 3.7288 20 6 0.8443 -10.3016 4.3777 21 6 1.1689 -11.3532 5.4200 22 6 -0.0374 -12.1384 4.8768 23 6 -0.5919 -10.7861 4.3964 24 6 1.2607 -4.8285 -0.5982 25 1 -0.4850 0.8400 -0.0004 26 1 0.3556 -2.3881 -0.0016 27 1 1.1219 -4.1599 1.9391 28 1 2.9284 -4.3519 1.9103 29 1 0.4245 -7.3021 0.3290 30 1 0.0484 -6.1381 1.6221 31 1 2.4771 -7.4288 2.2646 32 1 2.5799 -9.2304 3.9176 33 1 1.0399 -11.0073 6.4455 34 1 2.1246 -11.8510 5.2564 35 1 0.2146 -12.8213 4.0654 36 1 -0.6405 -12.6069 5.6546 37 1 -1.0525 -10.8277 3.4093 38 1 -1.2144 -10.2811 5.1350 39 1 1.5920 -5.1195 -1.5950 40 1 0.1801 -4.7019 -0.5315 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479288556.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:23 Heat of formation + Delta-G solvation = 26.384517 kcal Electronic energy + Delta-G solvation = -18882.590902 eV Core-core repulsion = 15892.061481 eV Total energy + Delta-G solvation = -2990.529421 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.93367 -38.80804 -38.07090 -34.58867 -33.26191 -31.22737 -30.14857 -27.30853 -26.11109 -25.07170 -24.07353 -23.18944 -21.07097 -20.79096 -19.13515 -18.34918 -17.11990 -16.88960 -16.19436 -15.80279 -15.26148 -14.88800 -14.69113 -14.43867 -13.99927 -13.50370 -13.25318 -12.90583 -12.76670 -12.23341 -11.99298 -11.87142 -11.78384 -11.37907 -11.25947 -11.22634 -10.87620 -10.83446 -10.50137 -10.19848 -10.09438 -9.81310 -9.72923 -9.46733 -9.43261 -8.91349 -8.85500 -6.95664 -5.77971 -3.06776 1.20363 3.19157 3.29919 3.42598 3.48011 3.50474 4.14634 4.18912 4.45383 4.58651 4.80305 4.92240 5.00587 5.06249 5.21051 5.26193 5.32878 5.39891 5.47543 5.49898 5.53333 5.71281 5.84733 5.86556 5.91908 5.94556 6.03177 6.10363 6.29132 6.33869 6.37763 6.38433 6.51573 6.61535 6.84862 7.12911 7.57698 7.69793 8.28400 8.40646 9.51659 10.10259 10.44418 11.44536 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.046419 B = 0.002705 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.058005 B =10349.609448 C =10404.188656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.161 4.161 13 C -0.127 4.127 14 H 0.088 0.912 15 C 0.133 3.867 16 N -0.722 5.722 17 C 0.545 3.455 18 O -0.546 6.546 19 C -0.200 4.200 20 C -0.064 4.064 21 C -0.109 4.109 22 C -0.143 4.143 23 C -0.106 4.106 24 C -0.142 4.142 25 H 0.255 0.745 26 H 0.385 0.615 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.400 0.600 32 H 0.131 0.869 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.061 0.939 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.351 -23.194 8.396 25.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.351 5.351 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.202 4.202 13 C -0.147 4.147 14 H 0.106 0.894 15 C 0.010 3.990 16 N -0.372 5.372 17 C 0.334 3.666 18 O -0.426 6.426 19 C -0.221 4.221 20 C -0.066 4.066 21 C -0.146 4.146 22 C -0.180 4.180 23 C -0.142 4.142 24 C -0.182 4.182 25 H 0.065 0.935 26 H 0.219 0.781 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.234 0.766 32 H 0.149 0.851 33 H 0.119 0.881 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.080 0.920 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.611 -23.086 8.200 24.764 hybrid contribution 0.735 1.035 0.118 1.275 sum 4.345 -22.052 8.318 23.966 Atomic orbital electron populations 1.69669 1.05140 1.25631 1.57577 1.24777 0.95532 0.97809 1.02909 0.86117 0.78773 0.84105 0.77191 1.20541 1.21847 1.21861 1.19351 0.91091 0.84243 1.42729 0.91048 1.42425 1.05783 0.99904 1.86984 1.21520 0.95297 0.85035 0.92796 0.90687 1.23945 1.01344 0.94966 0.99918 1.22641 0.98402 0.94421 0.99196 0.89402 1.21418 0.95272 0.91506 0.90848 1.45944 1.13195 1.35228 1.42869 1.18434 0.86767 0.80444 0.80943 1.90770 1.15264 1.70455 1.66083 1.21677 1.00476 0.98021 1.01877 1.23604 0.97986 0.91283 0.93722 1.22403 0.99549 0.94753 0.97914 1.22847 0.97413 0.96616 1.01111 1.22326 0.93984 0.94603 1.03323 1.23447 1.01035 0.97026 0.96706 0.93496 0.78065 0.90363 0.92791 0.91850 0.91267 0.76601 0.85091 0.88127 0.90299 0.89830 0.90568 0.89361 0.88400 0.92028 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.75 9.97 -15.06 -0.15 -6.90 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.71 -17.93 5.40 -52.64 -0.28 -18.21 16 10 C 0.17 3.22 4.48 -67.12 -0.30 2.92 16 11 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 12 C -0.16 -2.68 7.43 -25.92 -0.19 -2.88 16 13 C -0.13 -1.73 3.75 -89.81 -0.34 -2.07 16 14 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 15 C 0.13 1.81 5.51 -4.05 -0.02 1.79 16 16 N -0.72 -8.60 5.55 -61.49 -0.34 -8.94 16 17 C 0.55 7.31 7.76 -12.66 -0.10 7.21 16 18 O -0.55 -9.30 15.11 5.27 0.08 -9.22 16 19 C -0.20 -2.04 10.03 -37.81 -0.38 -2.42 16 20 C -0.06 -0.62 6.87 -100.39 -0.69 -1.31 16 21 C -0.11 -0.72 8.05 -27.01 -0.22 -0.94 16 22 C -0.14 -0.96 8.11 -25.93 -0.21 -1.17 16 23 C -0.11 -1.01 7.06 -27.00 -0.19 -1.20 16 24 C -0.14 -2.30 7.39 -25.92 -0.19 -2.49 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.39 10.33 7.93 -40.82 -0.32 10.01 16 27 H 0.08 1.45 7.90 -51.92 -0.41 1.04 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.08 7.84 -51.93 -0.41 0.67 16 31 H 0.40 3.69 8.46 -40.82 -0.35 3.34 16 32 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 1.01 7.48 -51.93 -0.39 0.62 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.08 1.37 8.08 -51.93 -0.42 0.95 16 LS Contribution 335.17 15.07 5.05 5.05 Total: -1.00 -32.54 335.17 -9.36 -41.89 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -6.49 Total: 9.63 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -3.08 Total: -9.95 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.10 Total: -54.78 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.08 Total: -9.22 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.54 -9.36 -41.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479288556.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.278 kcal (2) G-P(sol) polarization free energy of solvation -32.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds