Wall clock time and date at job start Mon Mar 30 2020 00:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99720 * 2 1 4 4 H 1.48502 * 109.46748 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47138 * 299.99731 * 3 2 1 6 6 H 1.48500 * 109.46940 * 60.00300 * 3 2 1 7 7 C 1.38811 * 120.00136 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00015 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00127 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00062 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.85081 * 336.19001 * 10 9 7 12 12 C 1.53776 * 113.69397 * 107.46265 * 10 9 7 13 13 C 1.53781 * 87.08478 * 139.99034 * 12 10 9 14 14 H 1.09004 * 113.68772 * 89.12856 * 13 12 10 15 15 C 1.52997 * 113.61697 * 220.01927 * 13 12 10 16 16 N 1.46495 * 109.47068 * 272.49757 * 15 13 12 17 17 C 1.34785 * 119.99874 * 179.97438 * 16 15 13 18 18 O 1.21613 * 119.99914 * 359.97438 * 17 16 15 19 19 C 1.47094 * 120.00036 * 180.02562 * 17 16 15 20 20 C 1.32998 * 120.00250 * 180.02562 * 19 17 16 21 21 C 1.51578 * 135.78342 * 180.02562 * 20 19 17 22 22 C 1.53846 * 86.75330 * 205.12782 * 21 20 19 23 23 C 1.51582 * 135.77899 * 359.96039 * 20 19 17 24 24 C 1.53777 * 113.61424 * 204.99985 * 10 9 7 25 25 H 0.96994 * 120.00285 * 0.02562 * 1 2 3 26 26 H 0.97002 * 119.99856 * 359.97438 * 9 7 2 27 27 H 1.09009 * 113.61360 * 25.44356 * 12 10 9 28 28 H 1.09000 * 113.61619 * 254.54337 * 12 10 9 29 29 H 1.09004 * 109.47139 * 152.49567 * 15 13 12 30 30 H 1.09003 * 109.46864 * 32.50056 * 15 13 12 31 31 H 0.96996 * 120.00450 * 359.97438 * 16 15 13 32 32 H 1.08002 * 120.00167 * 359.97438 * 19 17 16 33 33 H 1.08997 * 113.66822 * 90.66685 * 21 20 19 34 34 H 1.08994 * 113.66571 * 319.59590 * 21 20 19 35 35 H 1.09002 * 113.65420 * 89.68817 * 22 21 20 36 36 H 1.08998 * 113.65565 * 220.72523 * 22 21 20 37 37 H 1.09001 * 113.66228 * 40.40968 * 23 20 19 38 38 H 1.08998 * 113.66794 * 269.33705 * 23 20 19 39 39 H 1.08998 * 113.61926 * 105.38496 * 24 10 9 40 40 H 1.09005 * 113.69164 * 334.48876 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 1 3.0660 -3.5636 -0.4063 12 6 2.0002 -4.4038 1.3413 13 6 1.8495 -5.6984 0.5250 14 1 2.7996 -6.1645 0.2639 15 6 0.8472 -6.6873 1.1237 16 7 1.5293 -7.5460 2.0950 17 6 0.8398 -8.4990 2.7530 18 8 -0.3486 -8.6457 2.5407 19 6 1.5245 -9.3609 3.7288 20 6 0.8443 -10.3016 4.3777 21 6 1.1689 -11.3532 5.4200 22 6 -0.0374 -12.1384 4.8768 23 6 -0.5919 -10.7861 4.3964 24 6 1.2607 -4.8285 -0.5982 25 1 -0.4850 0.8400 -0.0004 26 1 0.3556 -2.3881 -0.0016 27 1 1.1219 -4.1599 1.9391 28 1 2.9284 -4.3519 1.9103 29 1 0.4245 -7.3021 0.3290 30 1 0.0484 -6.1381 1.6221 31 1 2.4771 -7.4288 2.2646 32 1 2.5799 -9.2304 3.9176 33 1 1.0399 -11.0073 6.4455 34 1 2.1246 -11.8510 5.2564 35 1 0.2146 -12.8213 4.0654 36 1 -0.6405 -12.6069 5.6546 37 1 -1.0525 -10.8277 3.4093 38 1 -1.2144 -10.2811 5.1350 39 1 1.5920 -5.1195 -1.5950 40 1 0.1801 -4.7019 -0.5315 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479288556.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:22 Heat of formation + Delta-G solvation = 5.035897 kcal Electronic energy + Delta-G solvation = -18883.516647 eV Core-core repulsion = 15892.061481 eV Total energy + Delta-G solvation = -2991.455166 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.95348 -39.95246 -39.01846 -36.01526 -34.97450 -32.38881 -31.72916 -28.60413 -26.72838 -26.46131 -25.89263 -24.11246 -22.44078 -21.74918 -20.54087 -19.28303 -18.96996 -17.90022 -17.24102 -16.62341 -16.53777 -16.27677 -15.88278 -15.55842 -15.37228 -15.02725 -14.72818 -14.35324 -13.42553 -13.35266 -13.24406 -13.05231 -12.93126 -12.88536 -12.68077 -12.59366 -12.16687 -12.06247 -11.88458 -11.64212 -11.56609 -11.44018 -11.08831 -10.84229 -10.66365 -10.30307 -9.88885 -8.98222 -7.94882 -5.23417 0.39273 1.47163 1.48078 1.58151 2.23157 2.33963 2.56589 3.36622 3.43241 3.57582 3.72151 3.75316 3.83901 3.92021 4.21200 4.25310 4.27817 4.35407 4.42856 4.55562 4.61829 4.74955 4.75642 4.87020 4.95532 4.97387 4.98287 5.04626 5.04993 5.21900 5.27203 5.35530 5.37188 5.45826 5.53832 5.67698 5.73421 6.27601 6.64976 7.30672 7.32766 8.11042 8.32826 9.29003 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.046419 B = 0.002705 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.058005 B =10349.609448 C =10404.188656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.974 3.026 4 H -0.263 1.263 5 H -0.294 1.294 6 H -0.296 1.296 7 C -0.240 4.240 8 H 0.080 0.920 9 N -0.731 5.731 10 C 0.144 3.856 11 H 0.083 0.917 12 C -0.153 4.153 13 C -0.095 4.095 14 H 0.123 0.877 15 C 0.139 3.861 16 N -0.711 5.711 17 C 0.537 3.463 18 O -0.593 6.593 19 C -0.211 4.211 20 C -0.071 4.071 21 C -0.095 4.095 22 C -0.133 4.133 23 C -0.122 4.122 24 C -0.138 4.138 25 H 0.250 0.750 26 H 0.371 0.629 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.416 0.584 32 H 0.164 0.836 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.033 -24.994 9.297 27.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.372 4.372 8 H 0.098 0.902 9 N -0.368 5.368 10 C 0.034 3.966 11 H 0.101 0.899 12 C -0.194 4.194 13 C -0.114 4.114 14 H 0.141 0.859 15 C 0.015 3.985 16 N -0.362 5.362 17 C 0.328 3.672 18 O -0.476 6.476 19 C -0.232 4.232 20 C -0.073 4.073 21 C -0.132 4.132 22 C -0.170 4.170 23 C -0.159 4.159 24 C -0.177 4.177 25 H 0.059 0.941 26 H 0.203 0.797 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.253 0.747 32 H 0.182 0.818 33 H 0.135 0.865 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.115 0.885 39 H 0.098 0.902 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.378 -24.934 9.107 27.301 hybrid contribution -0.127 1.500 -0.165 1.514 sum 6.251 -23.434 8.942 25.850 Atomic orbital electron populations 1.69834 1.06769 1.25949 1.59883 1.25623 0.96392 1.01336 1.04022 0.85056 0.78371 0.79740 0.76509 1.18676 1.22176 1.22291 1.19783 0.91639 0.85328 1.40461 0.90179 1.42657 1.05358 1.01298 1.87491 1.21959 0.95665 0.83802 0.95155 0.89940 1.23722 1.01033 0.96085 0.98550 1.22472 0.99432 0.92934 0.96527 0.85888 1.21186 0.94826 0.91488 0.90998 1.45805 1.13901 1.34403 1.42088 1.19079 0.86387 0.80631 0.81145 1.90752 1.17397 1.71817 1.67652 1.21771 1.01914 0.97923 1.01574 1.24086 0.98004 0.91240 0.93979 1.22439 1.00203 0.92978 0.97531 1.22835 0.97458 0.95185 1.01546 1.22439 0.94350 0.97137 1.02006 1.23333 0.99868 0.95975 0.98526 0.94120 0.79716 0.92828 0.91230 0.91957 0.93891 0.74656 0.81835 0.86543 0.88380 0.89568 0.88866 0.92181 0.88500 0.90228 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.80 13.06 21.65 0.28 -60.52 16 2 C -0.08 -4.76 5.50 84.86 0.47 -4.30 16 3 Si 0.97 46.44 29.55 68.60 2.03 48.46 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 7 C -0.24 -13.37 9.97 84.03 0.84 -12.53 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 9 N -0.73 -37.22 5.40 -320.46 -1.73 -38.95 16 10 C 0.14 5.46 4.48 45.52 0.20 5.67 16 11 H 0.08 3.01 8.10 -2.39 -0.02 2.99 16 12 C -0.15 -4.94 7.43 31.12 0.23 -4.70 16 13 C -0.09 -2.36 3.75 -10.27 -0.04 -2.40 16 14 H 0.12 2.33 8.14 -2.39 -0.02 2.32 16 15 C 0.14 3.69 5.51 86.38 0.48 4.16 16 16 N -0.71 -15.83 5.55 -466.72 -2.59 -18.42 16 17 C 0.54 14.10 7.76 86.57 0.67 14.78 16 18 O -0.59 -20.83 15.11 -4.07 -0.06 -20.89 16 19 C -0.21 -3.94 10.03 23.43 0.23 -3.70 16 20 C -0.07 -1.25 6.87 -17.11 -0.12 -1.37 16 21 C -0.09 -0.95 8.05 30.41 0.24 -0.70 16 22 C -0.13 -1.52 8.11 31.11 0.25 -1.27 16 23 C -0.12 -2.31 7.06 30.42 0.21 -2.09 16 24 C -0.14 -4.28 7.39 31.12 0.23 -4.05 16 25 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 26 H 0.37 20.62 7.93 -92.71 -0.73 19.89 16 27 H 0.05 2.01 7.90 -2.38 -0.02 1.99 16 28 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.04 1.38 7.84 -2.39 -0.02 1.36 16 31 H 0.42 6.44 8.46 -92.71 -0.78 5.65 16 32 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 33 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.09 0.76 8.14 -2.39 -0.02 0.75 16 37 H 0.06 1.46 7.48 -2.39 -0.02 1.44 16 38 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.06 2.25 8.08 -2.38 -0.02 2.23 16 Total: -1.00 -72.84 335.17 1.35 -71.49 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: -0.48 Total: 31.36 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: 3.91 Total: -12.53 kcal Atomic # 7 Polarization: -113.85 SS G_CDS: -4.04 Total: -117.89 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.06 Total: -20.89 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.46 kcal Total: -72.84 1.35 -71.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479288556.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.522 kcal (2) G-P(sol) polarization free energy of solvation -72.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds