Wall clock time and date at job start Mon Mar 30 2020 00:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00356 * 2 1 4 4 H 1.48498 * 109.47468 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46993 * 299.99794 * 3 2 1 6 6 H 1.48506 * 109.47008 * 59.99516 * 3 2 1 7 7 C 1.38820 * 119.99441 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99647 * 189.10179 * 7 2 1 9 9 N 1.36932 * 120.00042 * 9.11018 * 7 2 1 10 10 C 1.48149 * 127.84199 * 15.56858 * 9 7 2 11 11 C 1.54382 * 104.61815 * 140.41203 * 10 9 7 12 12 H 1.08998 * 118.18241 * 244.20345 * 11 10 9 13 13 C 1.52998 * 118.12429 * 87.19216 * 11 10 9 14 14 H 1.09002 * 117.44182 * 16.10721 * 13 11 10 15 15 C 1.53001 * 117.44387 * 160.85575 * 13 11 10 16 16 N 1.46500 * 109.47060 * 244.00023 * 15 13 11 17 17 C 1.34775 * 120.00275 * 179.97438 * 16 15 13 18 18 O 1.21283 * 119.99816 * 359.97438 * 17 16 15 19 19 C 1.50702 * 120.00204 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47447 * 179.97438 * 19 17 16 21 21 C 1.53000 * 117.50171 * 243.74890 * 20 19 17 22 22 C 1.52992 * 117.50043 * 175.08225 * 20 19 17 23 23 C 1.53001 * 60.49639 * 268.48093 * 13 11 10 24 24 H 1.09004 * 119.53710 * 248.21096 * 23 13 11 25 25 C 1.47829 * 127.86199 * 195.57316 * 9 7 2 26 26 H 0.97002 * 119.99889 * 0.02562 * 1 2 3 27 27 H 1.09001 * 110.40556 * 21.62453 * 10 9 7 28 28 H 1.09004 * 110.40460 * 259.19516 * 10 9 7 29 29 H 1.09000 * 109.46917 * 3.99974 * 15 13 11 30 30 H 1.08997 * 109.47269 * 123.99967 * 15 13 11 31 31 H 0.97009 * 119.99704 * 359.97438 * 16 15 13 32 32 H 1.08999 * 109.46691 * 299.99991 * 19 17 16 33 33 H 1.09000 * 109.46929 * 59.99466 * 19 17 16 34 34 H 1.09006 * 115.54566 * 29.41440 * 20 19 17 35 35 H 1.08998 * 117.49411 * 359.97438 * 21 20 19 36 36 H 1.08995 * 117.49844 * 145.01914 * 21 20 19 37 37 H 1.09001 * 117.49675 * 214.97857 * 22 20 19 38 38 H 1.09000 * 117.49987 * 359.97438 * 22 20 19 39 39 H 1.09001 * 110.42625 * 100.76444 * 25 9 7 40 40 H 1.09004 * 110.31600 * 338.38900 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0800 -1.2081 0.1485 9 7 1.3384 -2.3807 -0.1867 10 6 -0.0343 -2.5710 -0.7105 11 6 0.0638 -3.8171 -1.6166 12 1 -0.1231 -3.6939 -2.6834 13 6 -0.1185 -5.1931 -0.9729 14 1 -0.5684 -5.2278 0.0193 15 6 -0.4664 -6.3628 -1.8957 16 7 -1.7960 -6.8750 -1.5549 17 6 -2.3149 -7.9124 -2.2411 18 8 -1.6813 -8.4217 -3.1411 19 6 -3.6828 -8.4389 -1.8908 20 6 -4.0313 -9.6078 -2.8143 21 6 -5.2233 -9.4322 -3.7573 22 6 -5.3372 -10.3574 -2.5430 23 6 1.2853 -4.5960 -1.0900 24 1 2.0094 -5.0537 -1.7641 25 6 1.8177 -3.7519 0.0879 26 1 -0.4850 0.8401 -0.0004 27 1 -0.3433 -1.7020 -1.2914 28 1 -0.7319 -2.7500 0.1077 29 1 -0.4627 -6.0222 -2.9311 30 1 0.2712 -7.1556 -1.7714 31 1 -2.3029 -6.4673 -0.8352 32 1 -3.6868 -8.7796 -0.8554 33 1 -4.4201 -7.6457 -2.0151 34 1 -3.1836 -10.1888 -3.1776 35 1 -5.7595 -8.4839 -3.7194 36 1 -5.1600 -9.8980 -4.7406 37 1 -5.3487 -11.4315 -2.7283 38 1 -5.9479 -10.0181 -1.7064 39 1 1.4100 -4.1157 1.0311 40 1 2.9073 -3.7746 0.1099 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485586977.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:13 Heat of formation + Delta-G solvation = 18.455230 kcal Electronic energy + Delta-G solvation = -19184.778476 eV Core-core repulsion = 16193.905216 eV Total energy + Delta-G solvation = -2990.873260 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.98016 -40.24433 -37.97535 -36.29546 -34.97096 -32.78842 -30.82418 -28.91948 -28.44971 -26.39908 -23.21168 -22.98144 -22.17845 -21.62727 -20.89007 -20.67441 -18.85972 -18.22299 -17.17718 -16.87867 -16.57034 -16.18258 -15.71797 -15.39324 -14.90046 -14.79524 -14.60421 -14.37868 -14.21048 -13.42956 -13.24322 -13.18359 -12.88691 -12.74964 -12.39064 -12.31928 -12.27592 -11.97250 -11.91779 -11.76433 -11.28966 -11.07262 -10.93652 -10.82283 -10.64748 -10.53527 -10.01393 -8.91101 -7.92744 -5.28757 1.46054 1.46845 1.57679 1.68228 2.14084 2.47622 2.74347 2.96250 3.26040 3.61146 3.70132 3.79875 3.80493 3.85094 4.07684 4.18542 4.22738 4.27916 4.42779 4.52137 4.59506 4.66254 4.70888 4.74869 4.82976 4.83652 4.92910 5.01909 5.07519 5.21321 5.29610 5.34522 5.37421 5.44919 5.51373 5.53184 5.66183 6.17902 6.59804 7.00911 7.28792 7.67935 8.46084 9.21135 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.046941 B = 0.002991 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.347548 B = 9359.896014 C = 9696.576554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.063 4.063 3 Si 0.980 3.020 4 H -0.266 1.266 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.241 4.241 8 H 0.080 0.920 9 N -0.621 5.621 10 C 0.189 3.811 11 C -0.180 4.180 12 H 0.108 0.892 13 C -0.107 4.107 14 H 0.112 0.888 15 C 0.162 3.838 16 N -0.718 5.718 17 C 0.510 3.490 18 O -0.589 6.589 19 C -0.102 4.102 20 C -0.160 4.160 21 C -0.187 4.187 22 C -0.164 4.164 23 C -0.160 4.160 24 H 0.125 0.875 25 C 0.149 3.851 26 H 0.250 0.750 27 H 0.051 0.949 28 H 0.005 0.995 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.416 0.584 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.112 0.888 39 H 0.028 0.972 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.347 -17.955 -2.413 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.257 4.257 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.369 4.369 8 H 0.098 0.902 9 N -0.345 5.345 10 C 0.063 3.937 11 C -0.200 4.200 12 H 0.126 0.874 13 C -0.126 4.126 14 H 0.130 0.870 15 C 0.038 3.962 16 N -0.370 5.370 17 C 0.298 3.702 18 O -0.469 6.469 19 C -0.141 4.141 20 C -0.178 4.178 21 C -0.224 4.224 22 C -0.200 4.200 23 C -0.180 4.180 24 H 0.142 0.858 25 C 0.024 3.976 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.023 0.977 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.253 0.747 32 H 0.141 0.859 33 H 0.133 0.867 34 H 0.110 0.890 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.130 0.870 39 H 0.046 0.954 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.874 -18.035 -3.005 20.323 hybrid contribution 0.284 1.411 0.204 1.454 sum -8.590 -16.623 -2.801 18.920 Atomic orbital electron populations 1.70094 1.06458 1.25653 1.57207 1.25737 0.96545 1.01257 1.02148 0.85003 0.78272 0.79191 0.76786 1.18980 1.21789 1.21724 1.19417 0.91343 0.83695 1.42487 0.90228 1.45467 1.13981 1.01207 1.73852 1.20810 0.85980 0.93704 0.93186 1.24033 1.04616 0.91793 0.99515 0.87396 1.22429 0.98333 0.91787 1.00068 0.87016 1.20647 0.84459 0.93929 0.97127 1.45980 1.18940 1.34110 1.38013 1.21237 0.89043 0.79005 0.80871 1.90672 1.63627 1.60022 1.32625 1.21260 0.92533 0.98318 1.02039 1.22002 0.92951 1.00322 1.02565 1.23145 1.01501 1.02324 0.95407 1.23098 0.98509 0.98462 0.99979 1.23774 0.90600 1.02124 1.01489 0.85752 1.21230 0.97747 0.84332 0.94299 0.94116 0.93036 0.97694 0.92358 0.90872 0.74703 0.85926 0.86702 0.89027 0.87927 0.89204 0.88239 0.86981 0.95450 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.53 10.86 21.65 0.24 -56.29 16 2 C -0.06 -3.58 5.40 84.86 0.46 -3.12 16 3 Si 0.98 45.41 29.56 68.60 2.03 47.44 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 7 C -0.24 -13.51 10.35 84.04 0.87 -12.64 16 8 H 0.08 4.29 7.85 -2.91 -0.02 4.27 16 9 N -0.62 -31.97 3.37 -688.97 -2.32 -34.30 16 10 C 0.19 9.13 5.70 86.53 0.49 9.62 16 11 C -0.18 -6.57 6.74 -9.94 -0.07 -6.63 16 12 H 0.11 3.81 8.12 -2.39 -0.02 3.79 16 13 C -0.11 -3.00 5.40 -10.79 -0.06 -3.05 16 14 H 0.11 3.00 8.04 -2.39 -0.02 2.98 16 15 C 0.16 4.00 5.95 86.38 0.51 4.52 16 16 N -0.72 -14.72 5.56 -463.06 -2.57 -17.29 16 17 C 0.51 11.59 7.83 87.66 0.69 12.27 16 18 O -0.59 -18.76 15.56 -3.04 -0.05 -18.81 16 19 C -0.10 -1.48 5.98 29.85 0.18 -1.30 16 20 C -0.16 -2.72 5.41 -10.80 -0.06 -2.78 16 21 C -0.19 -2.76 10.18 30.62 0.31 -2.45 16 22 C -0.16 -1.97 10.25 30.62 0.31 -1.66 16 23 C -0.16 -5.31 6.85 -9.94 -0.07 -5.38 16 24 H 0.12 3.68 8.14 -2.39 -0.02 3.66 16 25 C 0.15 6.06 7.02 86.59 0.61 6.67 16 26 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 27 H 0.05 2.86 6.51 -2.39 -0.02 2.84 16 28 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.06 1.60 7.94 -2.39 -0.02 1.58 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.42 6.35 8.40 -92.70 -0.78 5.57 16 32 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.11 1.24 7.87 -2.39 -0.02 1.22 16 34 H 0.09 2.05 7.31 -2.38 -0.02 2.03 16 35 H 0.10 1.32 8.03 -2.39 -0.02 1.30 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 37 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 Total: -1.00 -70.55 330.95 1.75 -68.80 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.25 Total: 16.38 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 4.18 Total: -5.94 kcal Atomic # 7 Polarization: -103.22 SS G_CDS: -4.66 Total: -107.88 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.05 Total: -18.81 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -70.55 1.75 -68.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485586977.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.260 kcal (2) G-P(sol) polarization free energy of solvation -70.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds