Wall clock time and date at job start Mon Mar 30 2020 00:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00404 * 2 1 4 4 H 1.48504 * 109.47070 * 270.00090 * 3 2 1 5 5 H 1.48507 * 109.46831 * 29.99653 * 3 2 1 6 6 H 1.48493 * 109.47486 * 149.99595 * 3 2 1 7 7 C 1.38816 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99392 * 0.02562 * 7 2 1 9 9 N 1.36928 * 120.00590 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00163 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.47369 * 35.00446 * 10 9 7 12 12 C 1.53002 * 109.46932 * 155.00244 * 10 9 7 13 13 N 1.46496 * 109.47425 * 305.00118 * 12 10 9 14 14 C 1.34777 * 120.00266 * 180.02562 * 13 12 10 15 15 O 1.21274 * 120.00135 * 0.27234 * 14 13 12 16 16 C 1.50706 * 119.99766 * 179.97438 * 14 13 12 17 17 H 1.08999 * 115.55037 * 325.57837 * 16 14 13 18 18 C 1.53005 * 117.49404 * 111.25395 * 16 14 13 19 19 C 1.52993 * 117.49546 * 179.90763 * 16 14 13 20 20 C 1.52994 * 138.58721 * 121.61866 * 19 16 14 21 21 C 1.53000 * 60.00135 * 229.10616 * 20 19 16 22 22 C 1.52999 * 109.47155 * 274.99942 * 10 9 7 23 23 C 1.53001 * 117.49829 * 128.62230 * 22 10 9 24 24 C 1.52998 * 117.49820 * 59.99936 * 22 10 9 25 25 H 0.97000 * 119.99827 * 0.02562 * 1 2 3 26 26 H 0.97003 * 120.00128 * 0.02562 * 9 7 2 27 27 H 1.09004 * 109.46930 * 184.99939 * 12 10 9 28 28 H 1.09000 * 109.47312 * 64.99883 * 12 10 9 29 29 H 0.96999 * 119.99691 * 359.97438 * 13 12 10 30 30 H 1.09006 * 117.49510 * 214.97360 * 18 16 14 31 31 H 1.08993 * 117.49943 * 359.97438 * 18 16 14 32 32 H 1.09000 * 117.50070 * 336.59782 * 20 19 16 33 33 H 1.08996 * 117.49964 * 121.61585 * 20 19 16 34 34 H 1.08991 * 117.49942 * 252.50923 * 21 20 19 35 35 H 1.09006 * 117.51817 * 107.47685 * 21 20 19 36 36 H 1.09001 * 115.55120 * 274.33592 * 22 10 9 37 37 H 1.08998 * 117.49679 * 0.02562 * 23 22 10 38 38 H 1.09000 * 117.49664 * 145.02570 * 23 22 10 39 39 H 1.08993 * 117.50311 * 214.97765 * 24 22 10 40 40 H 1.08998 * 117.49882 * 0.02562 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 1 3.5650 -3.2064 -0.5888 12 6 5.4995 -2.2588 -0.6079 13 7 5.3626 -1.6633 -1.9394 14 6 6.4608 -1.3860 -2.6698 15 8 7.5622 -1.6339 -2.2268 16 6 6.3198 -0.7739 -4.0397 17 1 5.4476 -1.0936 -4.6099 18 6 6.7914 0.6704 -4.2200 19 6 7.6040 -0.4807 -4.8179 20 6 8.2479 -0.8584 -6.1534 21 6 9.0562 -0.9608 -4.8584 22 6 4.2576 -2.9758 1.4380 23 6 3.8308 -4.4163 1.7273 24 6 2.9739 -3.2501 2.2239 25 1 -0.4850 0.8401 -0.0004 26 1 3.8647 -0.3622 0.0014 27 1 6.0110 -3.2179 -0.6897 28 1 6.0785 -1.5916 0.0306 29 1 4.4815 -1.4694 -2.2956 30 1 6.2296 1.3009 -4.9093 31 1 7.2032 1.1780 -3.3478 32 1 7.9272 -1.7891 -6.6215 33 1 8.4965 -0.0485 -6.8391 34 1 9.8365 -0.2183 -4.6922 35 1 9.2672 -1.9588 -4.4740 36 1 5.1114 -2.5829 1.9901 37 1 3.4468 -5.0044 0.8939 38 1 4.4040 -4.9715 2.4699 39 1 2.9832 -3.0382 3.2929 40 1 2.0256 -3.0713 1.7170 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661171787.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:03:05 Heat of formation + Delta-G solvation = 41.385728 kcal Electronic energy + Delta-G solvation = -19866.814675 eV Core-core repulsion = 16876.935755 eV Total energy + Delta-G solvation = -2989.878919 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.03679 -39.31946 -38.30831 -36.13407 -35.17238 -33.64021 -32.99885 -30.15740 -26.09048 -24.70382 -23.33975 -23.26838 -23.02950 -21.67192 -21.13329 -20.22839 -19.47039 -18.03878 -17.06990 -16.97629 -16.34638 -16.04451 -15.87334 -15.72611 -15.48899 -15.28151 -14.64582 -14.62631 -14.14750 -13.49093 -13.16163 -13.02783 -12.75316 -12.62980 -12.38379 -12.34861 -12.28594 -12.09707 -11.65760 -11.20592 -11.09891 -11.06076 -11.01964 -10.93029 -10.87718 -10.66377 -10.05663 -9.32027 -7.96612 -5.29290 1.39968 1.41884 1.47795 1.48543 2.10117 2.51206 2.73839 2.88160 2.99194 3.33372 3.38664 3.63558 3.79013 3.82900 3.85869 4.10405 4.15145 4.31145 4.33840 4.46219 4.53230 4.59340 4.64678 4.75091 4.76577 4.79297 4.79802 4.89360 5.00219 5.02284 5.09927 5.16011 5.28069 5.38382 5.46148 5.51139 5.84622 6.25427 6.57491 7.11242 7.23497 7.85428 8.04884 9.24457 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.016968 B = 0.005663 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.762517 B = 4943.047660 C = 6201.185312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.056 4.056 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.305 1.305 6 H -0.263 1.263 7 C -0.208 4.208 8 H 0.065 0.935 9 N -0.741 5.741 10 C 0.201 3.799 11 H 0.059 0.941 12 C 0.127 3.873 13 N -0.714 5.714 14 C 0.535 3.465 15 O -0.578 6.578 16 C -0.153 4.153 17 H 0.141 0.859 18 C -0.095 4.095 19 C -0.221 4.221 20 C -0.105 4.105 21 C -0.127 4.127 22 C -0.171 4.171 23 C -0.162 4.162 24 C -0.176 4.176 25 H 0.255 0.745 26 H 0.363 0.637 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.412 0.588 30 H 0.129 0.871 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.265 -3.101 -8.501 17.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.248 4.248 3 Si 0.771 3.229 4 H -0.200 1.200 5 H -0.233 1.233 6 H -0.188 1.188 7 C -0.339 4.339 8 H 0.083 0.917 9 N -0.384 5.384 10 C 0.092 3.908 11 H 0.077 0.923 12 C 0.002 3.998 13 N -0.364 5.364 14 C 0.323 3.677 15 O -0.459 6.459 16 C -0.173 4.173 17 H 0.159 0.841 18 C -0.132 4.132 19 C -0.221 4.221 20 C -0.142 4.142 21 C -0.164 4.164 22 C -0.192 4.192 23 C -0.199 4.199 24 C -0.213 4.213 25 H 0.064 0.936 26 H 0.196 0.804 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.248 0.752 30 H 0.147 0.853 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.137 0.863 34 H 0.121 0.879 35 H 0.103 0.897 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.128 0.872 39 H 0.106 0.894 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 15.823 -3.369 -8.185 18.130 hybrid contribution -0.647 1.232 0.439 1.459 sum 15.176 -2.138 -7.746 17.172 Atomic orbital electron populations 1.69853 1.06928 1.26233 1.60304 1.25277 0.95743 1.00389 1.03366 0.85618 0.78264 0.80940 0.78120 1.20037 1.23269 1.18843 1.18913 0.81990 0.93183 1.39782 0.91717 1.42791 1.02622 1.03252 1.89711 1.20122 0.90221 0.87864 0.92556 0.92292 1.21499 0.96792 0.98584 0.82911 1.45986 1.09686 1.62998 1.17774 1.20143 0.83699 0.77434 0.86464 1.90634 1.27093 1.54828 1.73298 1.22029 0.99863 1.01780 0.93673 0.84089 1.22740 0.99838 0.88625 1.02017 1.21399 0.93609 1.03435 1.03700 1.22879 0.99119 1.03426 0.88758 1.22619 0.91157 1.01950 1.00654 1.22903 0.98843 0.99131 0.98347 1.23016 1.03183 0.90226 1.03488 1.22713 0.95612 1.03617 0.99366 0.93644 0.80383 0.90118 0.92410 0.75205 0.85315 0.89226 0.87675 0.86298 0.87949 0.89747 0.87921 0.88924 0.87217 0.89362 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.36 13.97 21.65 0.30 -60.06 16 2 C -0.06 -3.13 5.50 84.86 0.47 -2.66 16 3 Si 0.94 43.95 27.74 68.60 1.90 45.85 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 5 H -0.31 -14.87 7.11 99.48 0.71 -14.16 16 6 H -0.26 -11.48 6.52 99.48 0.65 -10.83 16 7 C -0.21 -10.75 9.11 84.04 0.77 -9.98 16 8 H 0.06 3.68 7.14 -2.91 -0.02 3.66 16 9 N -0.74 -31.17 4.34 -322.94 -1.40 -32.57 16 10 C 0.20 6.88 2.70 44.99 0.12 7.00 16 11 H 0.06 2.10 7.84 -2.39 -0.02 2.08 16 12 C 0.13 3.89 5.21 86.38 0.45 4.34 16 13 N -0.71 -21.58 5.39 -463.06 -2.49 -24.08 16 14 C 0.54 16.53 7.61 87.66 0.67 17.20 16 15 O -0.58 -21.29 16.24 -3.01 -0.05 -21.34 16 16 C -0.15 -3.75 6.19 -11.54 -0.07 -3.82 16 17 H 0.14 2.91 8.14 -2.39 -0.02 2.89 16 18 C -0.10 -2.07 10.24 30.62 0.31 -1.75 16 19 C -0.22 -4.94 5.06 -52.16 -0.26 -5.20 16 20 C -0.11 -1.72 10.53 30.59 0.32 -1.39 16 21 C -0.13 -2.69 10.16 30.59 0.31 -2.38 16 22 C -0.17 -5.46 5.36 -10.79 -0.06 -5.52 16 23 C -0.16 -4.44 10.18 30.60 0.31 -4.13 16 24 C -0.18 -6.11 9.78 30.59 0.30 -5.81 16 25 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 26 H 0.36 15.32 5.66 -92.71 -0.52 14.79 16 27 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.41 12.35 8.14 -92.71 -0.75 11.60 16 30 H 0.13 2.17 8.14 -2.38 -0.02 2.15 16 31 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.12 1.44 8.14 -2.39 -0.02 1.43 16 34 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.10 3.06 8.11 -2.39 -0.02 3.04 16 37 H 0.09 2.48 8.05 -2.39 -0.02 2.46 16 38 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.09 2.87 8.14 -2.39 -0.02 2.86 16 40 H 0.07 3.14 6.23 -2.39 -0.01 3.13 16 Total: -1.00 -65.87 335.06 1.60 -64.27 By element: Atomic # 1 Polarization: 42.31 SS G_CDS: -0.29 Total: 42.02 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: 3.64 Total: -14.10 kcal Atomic # 7 Polarization: -113.11 SS G_CDS: -3.59 Total: -116.70 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.05 Total: -21.34 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.90 Total: 45.85 kcal Total: -65.87 1.60 -64.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661171787.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.658 kcal (2) G-P(sol) polarization free energy of solvation -65.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds