Wall clock time and date at job start Mon Mar 30 2020 00:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00286 * 2 1 4 4 H 1.48499 * 109.47190 * 270.00442 * 3 2 1 5 5 H 1.48507 * 109.46860 * 29.99754 * 3 2 1 6 6 H 1.48494 * 109.47421 * 149.99891 * 3 2 1 7 7 C 1.38811 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00233 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99984 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47097 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47179 * 65.00319 * 11 10 9 13 13 N 1.46496 * 109.46999 * 304.99880 * 11 10 9 14 14 C 1.34777 * 119.99614 * 154.99671 * 13 11 10 15 15 O 1.21610 * 120.00259 * 0.02562 * 14 13 11 16 16 C 1.47106 * 120.00070 * 180.02562 * 14 13 11 17 17 C 1.32610 * 124.62234 * 179.70475 * 16 14 13 18 18 C 1.51117 * 110.75963 * 179.84734 * 17 16 14 19 19 C 1.54577 * 104.89824 * 343.79921 * 18 17 16 20 20 C 1.51114 * 124.61523 * 0.02562 * 16 14 13 21 21 C 1.53000 * 109.47167 * 184.99990 * 11 10 9 22 22 C 1.53000 * 117.50121 * 248.74994 * 21 11 10 23 23 C 1.52992 * 117.49994 * 180.08701 * 21 11 10 24 24 H 0.97000 * 119.99881 * 359.97438 * 1 2 3 25 25 H 0.96998 * 120.00194 * 0.02562 * 9 7 2 26 26 H 1.08997 * 109.47041 * 60.00614 * 10 9 7 27 27 H 1.09004 * 109.47504 * 300.00450 * 10 9 7 28 28 H 0.96996 * 120.00499 * 335.00248 * 13 11 10 29 29 H 1.08002 * 124.61932 * 359.97438 * 17 16 14 30 30 H 1.08998 * 110.51704 * 224.85019 * 18 17 16 31 31 H 1.08998 * 110.15745 * 102.56871 * 18 17 16 32 32 H 1.09001 * 110.98732 * 266.71647 * 19 18 17 33 33 H 1.08999 * 110.98096 * 142.91320 * 19 18 17 34 34 H 1.08994 * 110.36775 * 315.43152 * 20 16 14 35 35 H 1.08989 * 110.36876 * 77.65274 * 20 16 14 36 36 H 1.09007 * 115.54745 * 34.41908 * 21 11 10 37 37 H 1.08999 * 117.49362 * 359.97438 * 22 21 11 38 38 H 1.08993 * 117.49896 * 145.02002 * 22 21 11 39 39 H 1.09002 * 117.50094 * 214.98226 * 23 21 11 40 40 H 1.08997 * 117.50172 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0638 -4.8197 0.0022 12 1 0.4972 -4.8139 -0.9289 13 7 0.1448 -4.6758 1.1340 14 6 -1.0797 -5.2366 1.0832 15 8 -1.4216 -5.8625 0.0981 16 6 -2.0029 -5.0917 2.2193 17 6 -3.2272 -5.5991 2.2649 18 6 -3.8971 -5.2648 3.5775 19 6 -2.7465 -4.8201 4.5090 20 6 -1.6876 -4.3384 3.4908 21 6 1.8246 -6.1412 0.1280 22 6 1.8337 -7.0696 -1.0881 23 6 1.0021 -7.4311 0.1451 24 1 -0.4850 0.8401 0.0004 25 1 0.3556 -2.3881 0.0016 26 1 2.6853 -3.7142 0.8912 27 1 2.6841 -3.7150 -0.8888 28 1 0.4174 -4.1769 1.9198 29 1 -3.6826 -6.1748 1.4726 30 1 -4.3977 -6.1428 3.9855 31 1 -4.6092 -4.4512 3.4392 32 1 -2.3717 -5.6596 5.0946 33 1 -3.0632 -4.0038 5.1582 34 1 -0.6854 -4.5864 3.8401 35 1 -1.7768 -3.2645 3.3276 36 1 2.7236 -6.1093 0.7436 37 1 1.2973 -6.7391 -1.9775 38 1 2.7385 -7.6488 -1.2723 39 1 1.3601 -8.2480 0.7717 40 1 -0.0811 -7.3383 0.0673 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754437966.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:18:56 Heat of formation + Delta-G solvation = -10.625381 kcal Electronic energy + Delta-G solvation = -20197.627570 eV Core-core repulsion = 17205.493280 eV Total energy + Delta-G solvation = -2992.134290 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.24895 -39.21947 -37.99982 -36.63321 -34.98688 -33.03232 -30.62667 -29.70014 -28.84432 -25.95449 -23.76863 -23.11700 -23.01931 -21.77383 -21.22264 -19.85166 -19.07400 -18.05569 -17.45608 -16.73455 -16.65307 -16.28203 -15.80155 -15.60398 -15.13803 -14.89554 -14.45022 -13.95543 -13.63805 -13.59147 -13.19737 -12.94357 -12.78649 -12.71687 -12.57440 -12.48295 -12.31488 -12.08438 -12.03673 -11.98720 -11.85337 -11.28397 -11.12075 -10.99899 -10.78107 -10.03315 -9.77836 -9.03119 -7.94716 -5.25088 0.42800 1.48027 1.49769 1.58137 2.20128 2.32202 2.55610 3.02126 3.39264 3.55255 3.59186 3.67604 3.94161 4.08370 4.12704 4.16487 4.21769 4.31714 4.36004 4.44249 4.61695 4.79174 4.80215 4.84512 4.88131 4.89863 4.98894 5.02633 5.09552 5.17862 5.27104 5.36186 5.37021 5.41280 5.49427 5.58509 5.59710 6.25229 6.61914 7.27449 7.32488 8.04723 8.29506 9.28307 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.006290 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.773538 B = 4450.412614 C = 6019.174489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.975 3.025 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.266 1.266 7 C -0.245 4.245 8 H 0.080 0.920 9 N -0.743 5.743 10 C 0.150 3.850 11 C 0.177 3.823 12 H 0.056 0.944 13 N -0.698 5.698 14 C 0.560 3.440 15 O -0.583 6.583 16 C -0.214 4.214 17 C -0.072 4.072 18 C -0.101 4.101 19 C -0.114 4.114 20 C -0.092 4.092 21 C -0.166 4.166 22 C -0.163 4.163 23 C -0.183 4.183 24 H 0.250 0.750 25 H 0.373 0.627 26 H 0.041 0.959 27 H 0.038 0.962 28 H 0.407 0.593 29 H 0.131 0.869 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.122 0.878 37 H 0.080 0.920 38 H 0.118 0.882 39 H 0.105 0.895 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.300 -14.057 9.167 16.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.804 3.196 4 H -0.218 1.218 5 H -0.223 1.223 6 H -0.191 1.191 7 C -0.377 4.377 8 H 0.098 0.902 9 N -0.386 5.386 10 C 0.024 3.976 11 C 0.072 3.928 12 H 0.074 0.926 13 N -0.346 5.346 14 C 0.351 3.649 15 O -0.467 6.467 16 C -0.217 4.217 17 C -0.092 4.092 18 C -0.138 4.138 19 C -0.152 4.152 20 C -0.129 4.129 21 C -0.185 4.185 22 C -0.200 4.200 23 C -0.220 4.220 24 H 0.059 0.941 25 H 0.205 0.795 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.243 0.757 29 H 0.149 0.851 30 H 0.120 0.880 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.140 0.860 37 H 0.099 0.901 38 H 0.136 0.864 39 H 0.123 0.877 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.327 -14.363 8.493 16.847 hybrid contribution 0.115 1.409 -0.246 1.434 sum -2.212 -12.954 8.247 15.515 Atomic orbital electron populations 1.69843 1.06698 1.26003 1.59347 1.25576 0.96326 1.01126 1.03565 0.85122 0.77801 0.79411 0.77278 1.21769 1.22278 1.19097 1.19639 0.91606 0.85047 1.41371 0.90238 1.42521 1.05601 1.00936 1.89537 1.21040 0.93308 0.83851 0.99438 1.20576 0.89617 0.93553 0.89066 0.92601 1.45822 1.14454 1.53966 1.20406 1.18423 0.81767 0.77940 0.86808 1.90653 1.77124 1.43962 1.34927 1.21937 0.97061 1.05613 0.97049 1.24317 0.93270 0.92862 0.98727 1.21536 0.98390 1.02888 0.90984 1.22436 0.94086 1.02031 0.96604 1.21270 1.01112 0.99018 0.91499 1.22570 1.01823 0.90028 1.04097 1.22984 1.02687 1.02514 0.91851 1.23194 0.99356 0.97719 1.01687 0.94106 0.79485 0.94112 0.94461 0.75723 0.85119 0.87956 0.88905 0.89595 0.89152 0.90471 0.91450 0.85963 0.90129 0.86385 0.87697 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.42 13.06 21.65 0.28 -59.14 16 2 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 3 Si 0.97 45.81 29.55 68.60 2.03 47.83 16 4 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.25 -13.51 9.99 84.03 0.84 -12.67 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.74 -37.60 5.43 -343.44 -1.87 -39.46 16 10 C 0.15 5.95 5.80 86.38 0.50 6.45 16 11 C 0.18 6.31 2.43 44.99 0.11 6.42 16 12 H 0.06 2.35 7.33 -2.39 -0.02 2.33 16 13 N -0.70 -24.20 4.49 -446.14 -2.00 -26.20 16 14 C 0.56 20.17 7.13 86.57 0.62 20.78 16 15 O -0.58 -24.15 13.79 -4.06 -0.06 -24.20 16 16 C -0.21 -6.27 6.09 -18.56 -0.11 -6.38 16 17 C -0.07 -1.79 10.43 24.66 0.26 -1.53 16 18 C -0.10 -1.74 6.80 30.52 0.21 -1.53 16 19 C -0.11 -1.94 7.17 31.67 0.23 -1.71 16 20 C -0.09 -2.22 6.03 30.52 0.18 -2.03 16 21 C -0.17 -4.74 5.36 -10.80 -0.06 -4.80 16 22 C -0.16 -4.27 10.18 30.62 0.31 -3.96 16 23 C -0.18 -5.10 9.74 30.62 0.30 -4.80 16 24 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 25 H 0.37 20.64 7.33 -92.71 -0.68 19.96 16 26 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.41 13.48 7.61 -92.71 -0.71 12.78 16 29 H 0.13 3.31 8.03 -2.91 -0.02 3.28 16 30 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 1.73 7.83 -2.39 -0.02 1.71 16 35 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.12 3.05 8.11 -2.38 -0.02 3.03 16 37 H 0.08 2.33 8.05 -2.39 -0.02 2.31 16 38 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.09 3.12 5.02 -2.39 -0.01 3.11 16 Total: -1.00 -68.08 329.01 1.89 -66.19 By element: Atomic # 1 Polarization: 44.82 SS G_CDS: -0.34 Total: 44.48 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 3.85 Total: -9.50 kcal Atomic # 7 Polarization: -121.22 SS G_CDS: -3.59 Total: -124.80 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.06 Total: -24.20 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -68.08 1.89 -66.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754437966.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.562 kcal (2) G-P(sol) polarization free energy of solvation -68.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds