Wall clock time and date at job start Mon Mar 30 2020 00:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 110.01682 * 2 1 4 4 C 1.50697 * 109.46995 * 300.70162 * 3 2 1 5 5 N 1.29942 * 126.29071 * 269.68722 * 4 3 2 6 6 O 1.21305 * 110.25430 * 179.84716 * 5 4 3 7 7 C 1.33640 * 109.80826 * 0.42409 * 6 5 4 8 8 C 1.50699 * 126.55180 * 179.76188 * 7 6 5 9 9 C 1.53003 * 109.47113 * 269.97704 * 8 7 6 10 10 C 1.50699 * 109.47113 * 180.02562 * 9 8 7 11 11 H 1.07996 * 120.00068 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99763 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00166 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00077 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46939 * 59.99710 * 14 12 10 16 16 H 1.48494 * 109.47313 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46870 * 300.00050 * 14 12 10 18 18 N 1.31128 * 106.89724 * 359.73935 * 7 6 5 19 19 C 1.53876 * 110.02701 * 238.55689 * 2 1 3 20 20 C 1.54269 * 106.59898 * 240.71122 * 19 2 1 21 21 C 1.54885 * 104.19311 * 23.61584 * 20 19 2 22 22 C 1.54263 * 110.03192 * 121.39319 * 2 1 3 23 23 H 1.09001 * 109.47002 * 298.60530 * 1 2 3 24 24 H 1.08993 * 109.46955 * 58.60967 * 1 2 3 25 25 H 1.09000 * 109.47050 * 178.60796 * 1 2 3 26 26 H 1.09000 * 109.46751 * 60.70509 * 3 2 1 27 27 H 1.09000 * 109.46700 * 180.70191 * 3 2 1 28 28 H 1.08998 * 109.47247 * 29.97318 * 8 7 6 29 29 H 1.09001 * 109.47583 * 149.97248 * 8 7 6 30 30 H 1.09008 * 109.46893 * 299.99861 * 9 8 7 31 31 H 1.09001 * 109.47268 * 59.99351 * 9 8 7 32 32 H 0.97002 * 120.00228 * 179.97438 * 13 12 10 33 33 H 1.08993 * 110.03832 * 0.02562 * 19 2 1 34 34 H 1.09006 * 110.02602 * 121.43220 * 19 2 1 35 35 H 1.08999 * 110.48905 * 264.93918 * 20 19 2 36 36 H 1.09001 * 110.48314 * 142.29084 * 20 19 2 37 37 H 1.09001 * 110.75524 * 203.73785 * 21 20 19 38 38 H 1.09001 * 110.75638 * 80.37033 * 21 20 19 39 39 H 1.09005 * 110.48491 * 214.35128 * 22 2 1 40 40 H 1.09000 * 110.49254 * 336.86261 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0538 1.4376 0.0000 4 6 1.5441 2.1578 -1.2217 5 7 2.1329 2.2219 -2.3782 6 8 1.4656 2.8737 -3.1537 7 6 0.3584 3.3080 -2.5442 8 6 -0.7294 4.1535 -3.1548 9 6 -0.4019 5.6336 -2.9475 10 6 -1.4899 6.4791 -3.5576 11 1 -2.3307 6.0080 -4.0449 12 6 -1.4120 7.8542 -3.4936 13 7 -0.3884 8.4280 -2.8998 14 14 -2.7603 8.9024 -4.2505 15 1 -4.0573 8.5859 -3.6000 16 1 -2.4431 10.3389 -4.0480 17 1 -2.8528 8.6155 -5.7046 18 7 0.3991 2.8574 -1.3134 19 6 2.0570 -0.7542 -1.2334 20 6 2.8875 -1.9410 -0.7027 21 6 2.3281 -2.1899 0.7200 22 6 2.0585 -0.7550 1.2371 23 1 -0.3633 0.4920 0.9022 24 1 -0.3633 0.5352 -0.8772 25 1 -0.3633 -1.0274 -0.0250 26 1 1.7056 1.9510 0.8963 27 1 3.1437 1.4271 -0.0126 28 1 -0.7976 3.9426 -4.2220 29 1 -1.6813 3.9216 -2.6771 30 1 -0.3336 5.8446 -1.8802 31 1 0.5500 5.8655 -3.4252 32 1 -0.3333 9.3954 -2.8551 33 1 1.2229 -1.1197 -1.8322 34 1 2.6867 -0.0962 -1.8324 35 1 3.9440 -1.6770 -0.6564 36 1 2.7401 -2.8203 -1.3298 37 1 3.0676 -2.6926 1.3433 38 1 1.4031 -2.7649 0.6763 39 1 2.9812 -0.2994 1.5967 40 1 1.3071 -0.7668 2.0267 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361272120.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:14 Heat of formation + Delta-G solvation = 28.792490 kcal Electronic energy + Delta-G solvation = -19869.659122 eV Core-core repulsion = 16879.234119 eV Total energy + Delta-G solvation = -2990.425003 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.06761 -39.30501 -35.58394 -34.54984 -32.80756 -31.81809 -30.19956 -28.86808 -27.81940 -25.83041 -25.01156 -23.19503 -21.97186 -20.90130 -20.37452 -18.75921 -17.60515 -16.84731 -16.34233 -15.83235 -15.26285 -14.59104 -14.46466 -14.08578 -13.77083 -13.35425 -13.29602 -13.08002 -12.45044 -12.40487 -11.95388 -11.69970 -11.54192 -11.30694 -11.27015 -11.16580 -10.98058 -10.89553 -10.77593 -10.69676 -10.58397 -10.52849 -10.46371 -10.11051 -9.94115 -9.33231 -9.12411 -8.44711 -6.09188 -4.14058 1.66371 2.69598 3.30113 3.34636 3.36009 3.42745 3.96161 4.37274 4.40258 4.45951 4.47126 4.58973 5.08893 5.14372 5.21128 5.27266 5.29940 5.34727 5.44589 5.51932 5.61424 5.70040 5.73690 5.77572 5.81807 5.94516 5.95198 6.03876 6.11860 6.15824 6.20738 6.23793 6.31816 6.32619 6.50444 6.64429 7.49410 7.56939 7.86220 8.21901 8.66421 8.91069 9.50796 11.02040 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.049886 B = 0.003443 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.142602 B = 8131.581884 C = 8217.984141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.058 4.058 3 C -0.016 4.016 4 C 0.172 3.828 5 N -0.400 5.400 6 O 0.064 5.936 7 C 0.211 3.789 8 C -0.028 4.028 9 C 0.029 3.971 10 C -0.527 4.527 11 H 0.061 0.939 12 C 0.060 3.940 13 N -0.892 5.892 14 Si 0.898 3.102 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.275 1.275 18 N -0.493 5.493 19 C -0.122 4.122 20 C -0.123 4.123 21 C -0.123 4.123 22 C -0.113 4.113 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.026 0.974 31 H 0.023 0.977 32 H 0.263 0.737 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.479 -18.829 6.072 20.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.060 4.060 3 C -0.055 4.055 4 C -0.101 4.101 5 N -0.111 5.111 6 O 0.009 5.991 7 C -0.008 4.008 8 C -0.067 4.067 9 C -0.010 4.010 10 C -0.565 4.565 11 H 0.079 0.921 12 C -0.142 4.142 13 N -0.530 5.530 14 Si 0.725 3.275 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.201 1.201 18 N -0.227 5.227 19 C -0.160 4.160 20 C -0.160 4.160 21 C -0.161 4.161 22 C -0.151 4.151 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.117 0.883 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.176 -19.079 6.354 20.764 hybrid contribution -0.726 0.886 -0.506 1.252 sum 4.450 -18.193 5.848 19.621 Atomic orbital electron populations 1.21908 0.93571 1.01149 1.02735 1.21152 0.96311 0.92888 0.95616 1.20103 1.00403 0.93502 0.91512 1.25615 0.89915 0.98776 0.95793 1.74525 1.18784 1.14868 1.02955 1.85262 1.27534 1.49148 1.37150 1.29598 0.90007 0.93786 0.87397 1.20726 0.90525 0.95450 1.00028 1.19145 0.97945 0.85477 0.98399 1.21037 1.07008 0.91110 1.37316 0.92095 1.25012 0.95901 0.98108 0.95208 1.69958 1.29668 1.10441 1.42930 0.86568 0.82030 0.79145 0.79748 1.20083 1.21256 1.20071 1.71939 1.19258 1.14688 1.16817 1.22360 0.99696 0.96945 0.96964 1.22341 0.99508 0.97932 0.96255 1.22477 1.00672 0.96659 0.96267 1.22456 1.00988 0.95132 0.96509 0.92239 0.92301 0.92868 0.88897 0.89500 0.89231 0.88318 0.95552 0.95851 0.92690 0.92002 0.90867 0.91702 0.91935 0.91697 0.91584 0.91318 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 7.89 37.16 0.29 -1.31 16 2 C -0.06 -0.65 0.68 -153.39 -0.10 -0.75 16 3 C -0.02 -0.21 4.64 -27.88 -0.13 -0.34 16 4 C 0.17 2.90 5.81 -156.38 -0.91 1.99 16 5 N -0.40 -7.22 11.21 30.90 0.35 -6.87 16 6 O 0.06 1.21 11.31 18.11 0.20 1.42 16 7 C 0.21 4.04 7.77 -13.06 -0.10 3.94 16 8 C -0.03 -0.54 5.78 -27.88 -0.16 -0.71 16 9 C 0.03 0.71 4.95 -27.88 -0.14 0.57 16 10 C -0.53 -14.11 9.11 -34.44 -0.31 -14.43 16 11 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 14 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 N -0.49 -9.28 10.81 -9.87 -0.11 -9.39 16 19 C -0.12 -1.39 5.70 -25.61 -0.15 -1.53 16 20 C -0.12 -1.11 6.83 -25.07 -0.17 -1.28 16 21 C -0.12 -0.99 6.91 -24.74 -0.17 -1.16 16 22 C -0.11 -0.99 5.90 -25.07 -0.15 -1.14 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.83 6.63 -51.93 -0.34 0.49 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 29 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 30 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.06 0.73 7.67 -51.93 -0.40 0.34 16 34 H 0.07 0.96 6.46 -51.93 -0.34 0.63 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.56 7.86 -51.93 -0.41 0.15 16 40 H 0.07 0.57 7.84 -51.93 -0.41 0.16 16 LS Contribution 325.12 15.07 4.90 4.90 Total: -1.00 -29.46 325.12 -7.75 -37.20 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -6.51 Total: -3.08 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -2.30 Total: -14.60 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.98 Total: -41.76 kcal Atomic # 8 Polarization: 1.21 SS G_CDS: 0.20 Total: 1.42 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.46 -7.75 -37.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361272120.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.994 kcal (2) G-P(sol) polarization free energy of solvation -29.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds