Wall clock time and date at job start Mon Mar 30 2020 00:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 110.01682 * 2 1 4 4 C 1.50697 * 109.46995 * 300.70162 * 3 2 1 5 5 N 1.29942 * 126.29071 * 269.68722 * 4 3 2 6 6 O 1.21305 * 110.25430 * 179.84716 * 5 4 3 7 7 C 1.33640 * 109.80826 * 0.42409 * 6 5 4 8 8 C 1.50699 * 126.55180 * 179.76188 * 7 6 5 9 9 C 1.53003 * 109.47113 * 269.97704 * 8 7 6 10 10 C 1.50699 * 109.47113 * 180.02562 * 9 8 7 11 11 H 1.07996 * 120.00068 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99763 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00166 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00077 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46939 * 59.99710 * 14 12 10 16 16 H 1.48494 * 109.47313 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46870 * 300.00050 * 14 12 10 18 18 N 1.31128 * 106.89724 * 359.73935 * 7 6 5 19 19 C 1.53876 * 110.02701 * 238.55689 * 2 1 3 20 20 C 1.54269 * 106.59898 * 240.71122 * 19 2 1 21 21 C 1.54885 * 104.19311 * 23.61584 * 20 19 2 22 22 C 1.54263 * 110.03192 * 121.39319 * 2 1 3 23 23 H 1.09001 * 109.47002 * 298.60530 * 1 2 3 24 24 H 1.08993 * 109.46955 * 58.60967 * 1 2 3 25 25 H 1.09000 * 109.47050 * 178.60796 * 1 2 3 26 26 H 1.09000 * 109.46751 * 60.70509 * 3 2 1 27 27 H 1.09000 * 109.46700 * 180.70191 * 3 2 1 28 28 H 1.08998 * 109.47247 * 29.97318 * 8 7 6 29 29 H 1.09001 * 109.47583 * 149.97248 * 8 7 6 30 30 H 1.09008 * 109.46893 * 299.99861 * 9 8 7 31 31 H 1.09001 * 109.47268 * 59.99351 * 9 8 7 32 32 H 0.97002 * 120.00228 * 179.97438 * 13 12 10 33 33 H 1.08993 * 110.03832 * 0.02562 * 19 2 1 34 34 H 1.09006 * 110.02602 * 121.43220 * 19 2 1 35 35 H 1.08999 * 110.48905 * 264.93918 * 20 19 2 36 36 H 1.09001 * 110.48314 * 142.29084 * 20 19 2 37 37 H 1.09001 * 110.75524 * 203.73785 * 21 20 19 38 38 H 1.09001 * 110.75638 * 80.37033 * 21 20 19 39 39 H 1.09005 * 110.48491 * 214.35128 * 22 2 1 40 40 H 1.09000 * 110.49254 * 336.86261 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0538 1.4376 0.0000 4 6 1.5441 2.1578 -1.2217 5 7 2.1329 2.2219 -2.3782 6 8 1.4656 2.8737 -3.1537 7 6 0.3584 3.3080 -2.5442 8 6 -0.7294 4.1535 -3.1548 9 6 -0.4019 5.6336 -2.9475 10 6 -1.4899 6.4791 -3.5576 11 1 -2.3307 6.0080 -4.0449 12 6 -1.4120 7.8542 -3.4936 13 7 -0.3884 8.4280 -2.8998 14 14 -2.7603 8.9024 -4.2505 15 1 -4.0573 8.5859 -3.6000 16 1 -2.4431 10.3389 -4.0480 17 1 -2.8528 8.6155 -5.7046 18 7 0.3991 2.8574 -1.3134 19 6 2.0570 -0.7542 -1.2334 20 6 2.8875 -1.9410 -0.7027 21 6 2.3281 -2.1899 0.7200 22 6 2.0585 -0.7550 1.2371 23 1 -0.3633 0.4920 0.9022 24 1 -0.3633 0.5352 -0.8772 25 1 -0.3633 -1.0274 -0.0250 26 1 1.7056 1.9510 0.8963 27 1 3.1437 1.4271 -0.0126 28 1 -0.7976 3.9426 -4.2220 29 1 -1.6813 3.9216 -2.6771 30 1 -0.3336 5.8446 -1.8802 31 1 0.5500 5.8655 -3.4252 32 1 -0.3333 9.3954 -2.8551 33 1 1.2229 -1.1197 -1.8322 34 1 2.6867 -0.0962 -1.8324 35 1 3.9440 -1.6770 -0.6564 36 1 2.7401 -2.8203 -1.3298 37 1 3.0676 -2.6926 1.3433 38 1 1.4031 -2.7649 0.6763 39 1 2.9812 -0.2994 1.5967 40 1 1.3071 -0.7668 2.0267 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361272120.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:14 Heat of formation + Delta-G solvation = 12.083144 kcal Electronic energy + Delta-G solvation = -19870.383694 eV Core-core repulsion = 16879.234119 eV Total energy + Delta-G solvation = -2991.149575 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -46.51502 -40.16869 -37.02080 -36.23525 -34.49934 -33.00477 -31.83208 -29.65303 -28.90468 -27.71984 -25.91723 -24.74775 -23.64558 -22.05750 -21.44975 -19.73724 -19.06727 -18.57987 -18.06216 -16.64813 -16.49535 -16.14331 -15.82675 -15.56324 -14.86607 -14.59183 -14.40797 -14.18491 -14.09306 -13.58408 -13.44976 -13.17630 -12.79752 -12.75012 -12.62346 -12.48750 -12.06208 -12.03209 -11.98258 -11.91981 -11.87091 -11.59154 -11.50563 -11.44276 -11.37041 -11.34373 -10.67327 -10.56209 -8.20569 -6.32917 0.17414 1.27945 1.45807 1.48695 1.56295 1.91079 2.43661 2.71742 3.10170 3.14639 3.59246 3.60898 3.73761 4.06735 4.23987 4.32262 4.39572 4.45396 4.47283 4.52929 4.54200 4.63115 4.73557 4.79501 4.82578 4.93753 4.97813 5.00208 5.00343 5.08795 5.10907 5.24462 5.28228 5.41221 5.42535 5.43174 5.49385 5.53126 5.77031 6.12878 6.82591 7.19890 7.37304 8.91727 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.049886 B = 0.003443 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.142602 B = 8131.581884 C = 8217.984141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.055 4.055 3 C -0.020 4.020 4 C 0.179 3.821 5 N -0.410 5.410 6 O 0.052 5.948 7 C 0.203 3.797 8 C -0.013 4.013 9 C 0.035 3.965 10 C -0.540 4.540 11 H 0.078 0.922 12 C 0.000 4.000 13 N -0.936 5.936 14 Si 0.970 3.030 15 H -0.264 1.264 16 H -0.289 1.289 17 H -0.263 1.263 18 N -0.505 5.505 19 C -0.123 4.123 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.109 4.109 23 H 0.061 0.939 24 H 0.029 0.971 25 H 0.067 0.933 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.112 0.888 29 H 0.112 0.888 30 H -0.007 1.007 31 H -0.004 1.004 32 H 0.264 0.736 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.789 -20.259 6.535 21.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.057 4.057 3 C -0.058 4.058 4 C -0.094 4.094 5 N -0.123 5.123 6 O 0.001 5.999 7 C -0.016 4.016 8 C -0.052 4.052 9 C -0.003 4.003 10 C -0.578 4.578 11 H 0.096 0.904 12 C -0.198 4.198 13 N -0.575 5.575 14 Si 0.794 3.206 15 H -0.189 1.189 16 H -0.214 1.214 17 H -0.187 1.187 18 N -0.240 5.240 19 C -0.161 4.161 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.146 4.146 23 H 0.080 0.920 24 H 0.049 0.951 25 H 0.086 0.914 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.012 0.988 31 H 0.014 0.986 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.477 -20.525 6.796 22.080 hybrid contribution -0.461 1.288 -0.618 1.501 sum 4.016 -19.237 6.178 20.600 Atomic orbital electron populations 1.21878 0.94132 1.01614 1.01426 1.21169 0.95780 0.91812 0.96893 1.20399 1.01183 0.94354 0.89897 1.26312 0.88923 0.97661 0.96510 1.74528 1.18962 1.15389 1.03455 1.85245 1.27556 1.49531 1.37613 1.29499 0.90166 0.94221 0.87712 1.20476 0.91061 0.91923 1.01768 1.18926 0.96467 0.89135 0.95761 1.21544 1.07677 0.91700 1.36875 0.90389 1.26013 0.98321 0.99810 0.95683 1.70111 1.32004 1.10726 1.44703 0.85419 0.78992 0.76829 0.79329 1.18901 1.21448 1.18746 1.71953 1.20268 1.15053 1.16683 1.22339 0.99338 0.97595 0.96811 1.22336 0.99301 0.97032 0.97077 1.22475 1.01286 0.96272 0.95521 1.22452 1.01589 0.95176 0.95397 0.91984 0.95148 0.91448 0.88081 0.88247 0.86935 0.86965 0.98835 0.98582 0.92740 0.93053 0.93002 0.91331 0.91297 0.89989 0.91229 0.90380 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 7.89 71.98 0.57 -2.42 16 2 C -0.06 -1.14 0.68 -51.46 -0.04 -1.18 16 3 C -0.02 -0.48 4.64 29.85 0.14 -0.35 16 4 C 0.18 6.03 5.81 138.46 0.80 6.84 16 5 N -0.41 -14.96 11.21 -60.31 -0.68 -15.63 16 6 O 0.05 2.02 11.31 74.86 0.85 2.87 16 7 C 0.20 7.87 7.77 88.38 0.69 8.56 16 8 C -0.01 -0.52 5.78 29.85 0.17 -0.35 16 9 C 0.04 1.80 4.95 29.85 0.15 1.95 16 10 C -0.54 -28.96 9.11 25.60 0.23 -28.72 16 11 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 12 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 13 N -0.94 -56.26 13.29 21.45 0.28 -55.97 16 14 Si 0.97 42.67 29.54 68.60 2.03 44.70 16 15 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 16 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 17 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 18 N -0.51 -19.17 10.81 -303.20 -3.28 -22.45 16 19 C -0.12 -2.69 5.70 31.32 0.18 -2.51 16 20 C -0.12 -1.93 6.83 31.67 0.22 -1.72 16 21 C -0.12 -1.55 6.91 31.89 0.22 -1.33 16 22 C -0.11 -1.60 5.90 31.67 0.19 -1.42 16 23 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.03 0.84 6.63 -2.39 -0.02 0.83 16 25 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 29 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 30 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 31 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 33 H 0.05 1.20 7.67 -2.39 -0.02 1.18 16 34 H 0.05 1.35 6.46 -2.38 -0.02 1.33 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.08 1.03 7.86 -2.38 -0.02 1.02 16 40 H 0.08 1.05 7.84 -2.39 -0.02 1.03 16 Total: -1.00 -64.08 325.12 4.19 -59.89 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 1.01 Total: 8.78 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: 3.98 Total: -22.19 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -3.67 Total: -94.05 kcal Atomic # 8 Polarization: 2.02 SS G_CDS: 0.85 Total: 2.87 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -64.08 4.19 -59.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361272120.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.976 kcal (2) G-P(sol) polarization free energy of solvation -64.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds