Wall clock time and date at job start Sun Mar 29 2020 23:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99715 * 2 1 4 4 H 1.48501 * 109.47099 * 239.99958 * 3 2 1 5 5 H 1.48503 * 109.46953 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47243 * 119.99828 * 3 2 1 7 7 C 1.38812 * 120.00560 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00044 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99743 * 359.97438 * 7 2 1 10 10 C 1.47577 * 134.49211 * 0.02562 * 9 7 2 11 11 C 1.53949 * 86.11578 * 155.35714 * 10 9 7 12 12 C 1.47577 * 134.49003 * 179.97438 * 9 7 2 13 13 H 1.08999 * 113.76881 * 90.34365 * 12 9 7 14 14 C 1.52999 * 113.77018 * 318.94420 * 12 9 7 15 15 N 1.46496 * 109.47053 * 78.51096 * 14 12 9 16 16 C 1.34780 * 119.99962 * 180.02562 * 15 14 12 17 17 O 1.21281 * 119.99844 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.99955 * 179.97438 * 16 15 14 19 19 C 1.53892 * 113.58627 * 279.21370 * 18 16 15 20 20 C 1.53419 * 86.82694 * 220.45760 * 19 18 16 21 21 C 1.52456 * 128.61263 * 165.09892 * 20 19 18 22 22 C 1.52465 * 128.51963 * 245.01978 * 20 19 18 23 23 C 1.53254 * 87.71999 * 25.01677 * 20 19 18 24 24 H 0.96999 * 120.00197 * 359.97438 * 1 2 3 25 25 H 1.09003 * 113.76710 * 41.05934 * 10 9 7 26 26 H 1.08991 * 113.77259 * 269.65548 * 10 9 7 27 27 H 1.09004 * 113.74162 * 269.26186 * 11 10 9 28 28 H 1.08999 * 113.74009 * 137.95143 * 11 10 9 29 29 H 1.09003 * 109.46899 * 198.50580 * 14 12 9 30 30 H 1.08996 * 109.47389 * 318.50298 * 14 12 9 31 31 H 0.97004 * 120.00335 * 359.97438 * 15 14 12 32 32 H 1.08999 * 112.83555 * 50.33082 * 18 16 15 33 33 H 1.08997 * 113.65033 * 334.92835 * 19 18 16 34 34 H 1.09001 * 113.64695 * 105.93420 * 19 18 16 35 35 H 1.09000 * 117.51803 * 224.95873 * 21 20 19 36 36 H 1.09005 * 117.51361 * 10.06487 * 21 20 19 37 37 H 1.09001 * 117.51307 * 349.79590 * 22 20 19 38 38 H 1.08998 * 117.51532 * 134.86398 * 22 20 19 39 39 H 1.09001 * 113.64900 * 220.48938 * 23 20 19 40 40 H 1.09004 * 113.64646 * 89.48618 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 -0.1031 -2.7574 0.0019 11 6 0.3473 -4.0835 -0.6373 12 6 1.7204 -3.8100 0.0019 13 1 1.8329 -4.2345 0.9996 14 6 2.9020 -4.1223 -0.9185 15 7 4.1497 -3.7188 -0.2653 16 6 5.3283 -3.8990 -0.8939 17 8 5.3559 -4.3957 -2.0000 18 6 6.6117 -3.4834 -0.2222 19 6 6.9082 -1.9779 -0.3388 20 6 8.3725 -2.3712 -0.5730 21 6 9.5118 -1.5166 -1.1170 22 6 9.5854 -2.0817 0.3042 23 6 7.8636 -3.7233 -1.0843 24 1 -0.4850 0.8400 0.0004 25 1 -0.7167 -2.1397 -0.6539 26 1 -0.5269 -2.8723 0.9995 27 1 0.3594 -4.0636 -1.7271 28 1 -0.1588 -4.9599 -0.2326 29 1 2.9293 -5.1923 -1.1244 30 1 2.7882 -3.5751 -1.8542 31 1 4.1276 -3.3212 0.6192 32 1 6.7014 -3.8682 0.7937 33 1 6.4391 -1.5054 -1.2017 34 1 6.7454 -1.4272 0.5877 35 1 10.1607 -1.9629 -1.8706 36 1 9.3319 -0.4469 -1.2248 37 1 9.4538 -1.3838 1.1311 38 1 10.2823 -2.8999 0.4859 39 1 8.4657 -4.5701 -0.7547 40 1 7.6609 -3.7376 -2.1552 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038683082.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:23 Heat of formation + Delta-G solvation = 60.955710 kcal Electronic energy + Delta-G solvation = -20104.298259 eV Core-core repulsion = 17115.267957 eV Total energy + Delta-G solvation = -2989.030301 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.26394 -38.52397 -37.66398 -33.99083 -33.59543 -32.17352 -28.19101 -27.76580 -25.75092 -24.37795 -23.36572 -22.57668 -21.81625 -19.97877 -19.03778 -18.38431 -17.17558 -16.42443 -15.77511 -15.54547 -15.13772 -15.06820 -14.44643 -14.30990 -13.77201 -13.31640 -13.05560 -12.54219 -12.33731 -12.04866 -11.91471 -11.61050 -11.46014 -11.40722 -11.10006 -11.01119 -10.73980 -10.56706 -10.40821 -10.32412 -10.00008 -9.76831 -9.75791 -9.55643 -9.19345 -8.79878 -8.53789 -6.89619 -5.76567 -3.08958 2.96764 3.37051 3.41573 3.43104 3.50666 3.75094 4.27569 4.42670 4.51686 4.69114 4.76781 4.82785 5.10732 5.29033 5.33196 5.41347 5.49798 5.59779 5.62869 5.72183 5.72991 5.75239 5.82562 5.92551 5.96891 6.01168 6.11195 6.19811 6.31025 6.34881 6.41190 6.62616 6.73312 6.93566 7.24579 7.41380 7.58938 7.95210 7.98383 8.61772 9.04130 9.70981 10.59573 11.40174 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.016977 B = 0.005946 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.893907 B = 4708.275239 C = 6100.910815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.906 3.094 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.218 4.218 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.159 3.841 11 C -0.156 4.156 12 C 0.126 3.874 13 H 0.049 0.951 14 C 0.123 3.877 15 N -0.712 5.712 16 C 0.519 3.481 17 O -0.553 6.553 18 C -0.131 4.131 19 C -0.082 4.082 20 C -0.163 4.163 21 C -0.167 4.167 22 C -0.152 4.152 23 C -0.073 4.073 24 H 0.253 0.747 25 H 0.073 0.927 26 H 0.026 0.974 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.402 0.598 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.076 -6.937 1.587 14.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.737 3.263 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.346 4.346 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.034 3.966 11 C -0.195 4.195 12 C 0.018 3.982 13 H 0.066 0.934 14 C -0.002 4.002 15 N -0.362 5.362 16 C 0.305 3.695 17 O -0.431 6.431 18 C -0.153 4.153 19 C -0.120 4.120 20 C -0.163 4.163 21 C -0.203 4.203 22 C -0.189 4.189 23 C -0.111 4.111 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.044 0.956 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.236 0.764 32 H 0.129 0.871 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.088 0.912 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 13.076 -6.929 0.792 14.819 hybrid contribution 0.406 1.233 0.671 1.462 sum 13.482 -5.696 1.463 14.709 Atomic orbital electron populations 1.69804 1.04958 1.25336 1.56633 1.24752 0.95604 0.97369 1.02646 0.86293 0.78589 0.83575 0.77876 1.21138 1.21589 1.21241 1.18896 0.90121 0.81919 1.43671 0.90405 1.46058 1.02271 0.98564 1.85962 1.22198 0.87961 0.89616 0.96875 1.23767 0.96208 0.98959 1.00569 1.22497 0.92408 0.87653 0.95625 0.93366 1.21740 0.82535 0.98592 0.97340 1.45990 1.06096 1.62729 1.21346 1.20382 0.85065 0.78149 0.85921 1.90647 1.87498 1.44908 1.20089 1.22589 0.93028 0.98683 1.00960 1.22441 0.92578 0.93978 1.02976 1.22223 0.90552 0.98461 1.05037 1.22790 1.01325 0.99501 0.96733 1.22777 0.98863 1.03050 0.94229 1.22348 0.93680 0.94412 1.00611 0.93660 0.90840 0.95606 0.90529 0.92831 0.92311 0.91090 0.76352 0.87144 0.89005 0.90457 0.88756 0.88687 0.88619 0.88717 0.91233 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.93 11.38 55.49 0.63 -26.30 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.22 -5.83 10.51 -15.06 -0.16 -5.98 16 8 H 0.08 1.98 7.80 -52.49 -0.41 1.57 16 9 N -0.60 -14.61 3.57 -170.79 -0.61 -15.22 16 10 C 0.16 3.64 7.52 -2.98 -0.02 3.62 16 11 C -0.16 -2.86 7.86 -25.82 -0.20 -3.06 16 12 C 0.13 2.41 4.33 -66.88 -0.29 2.12 16 13 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 14 C 0.12 2.24 5.53 -4.04 -0.02 2.21 16 15 N -0.71 -12.00 5.53 -60.30 -0.33 -12.34 16 16 C 0.52 8.70 7.35 -10.98 -0.08 8.62 16 17 O -0.55 -11.11 15.90 5.56 0.09 -11.02 16 18 C -0.13 -1.71 4.14 -90.85 -0.38 -2.09 16 19 C -0.08 -1.06 7.66 -26.05 -0.20 -1.26 16 20 C -0.16 -1.85 3.09 -154.71 -0.48 -2.33 16 21 C -0.17 -1.68 10.53 -26.95 -0.28 -1.96 16 22 C -0.15 -1.43 10.53 -26.94 -0.28 -1.72 16 23 C -0.07 -0.90 7.42 -26.14 -0.19 -1.09 16 24 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.07 1.88 7.15 -51.93 -0.37 1.51 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.40 6.39 8.47 -40.82 -0.35 6.04 16 32 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.09 1.35 8.09 -51.93 -0.42 0.93 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.10 1.38 7.44 -51.93 -0.39 1.00 16 LS Contribution 332.31 15.07 5.01 5.01 Total: -1.00 -31.21 332.31 -9.49 -40.70 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.56 Total: 5.51 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -2.69 Total: -3.21 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.31 Total: -53.86 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.21 -9.49 -40.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038683082.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.655 kcal (2) G-P(sol) polarization free energy of solvation -31.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds