Wall clock time and date at job start Mon Mar 30 2020 00:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46935 * 149.42444 * 3 2 1 5 5 C 1.36940 * 119.99942 * 263.90747 * 4 3 2 6 6 H 1.07994 * 119.99681 * 199.40068 * 5 4 3 7 7 C 1.38815 * 119.99779 * 19.40795 * 5 4 3 8 8 N 1.31612 * 120.00056 * 22.26492 * 7 5 4 9 9 Si 1.86800 * 119.99578 * 202.27054 * 7 5 4 10 10 H 1.48497 * 109.47364 * 60.00050 * 9 7 5 11 11 H 1.48508 * 109.46800 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47092 * 299.99564 * 9 7 5 13 13 C 1.46502 * 119.99740 * 83.91418 * 4 3 2 14 14 C 1.53001 * 109.47229 * 89.99945 * 13 4 3 15 15 N 1.46896 * 109.47117 * 179.97438 * 14 13 4 16 16 C 1.47056 * 110.99913 * 314.25817 * 15 14 13 17 17 C 1.55009 * 108.79361 * 181.56755 * 16 15 14 18 18 H 1.08998 * 112.14799 * 186.24499 * 17 16 15 19 19 C 1.54718 * 108.45317 * 311.29104 * 17 16 15 20 20 C 1.54554 * 103.81865 * 87.79731 * 19 17 16 21 21 C 1.54712 * 103.82377 * 359.97438 * 20 19 17 22 22 H 1.08995 * 112.16039 * 147.18841 * 21 20 19 23 23 C 1.47057 * 111.00075 * 189.99980 * 15 14 13 24 24 O 1.44646 * 104.34113 * 25.53494 * 21 20 19 25 25 H 4.40638 * 5.51518 * 179.97438 * 4 1 2 26 26 H 1.08999 * 109.47465 * 29.42437 * 3 2 1 27 27 H 1.08997 * 109.46974 * 269.42648 * 3 2 1 28 28 H 0.97007 * 120.00016 * 180.02562 * 8 7 5 29 29 H 1.08994 * 109.47348 * 329.99269 * 13 4 3 30 30 H 1.09006 * 109.46839 * 209.99495 * 13 4 3 31 31 H 1.09005 * 109.47055 * 59.99332 * 14 13 4 32 32 H 1.08995 * 109.47278 * 299.99776 * 14 13 4 33 33 H 1.08996 * 109.56873 * 301.61226 * 16 15 14 34 34 H 1.08993 * 109.56964 * 61.85490 * 16 15 14 35 35 H 1.09003 * 110.55867 * 206.37786 * 19 17 16 36 36 H 1.09001 * 110.55510 * 329.21348 * 19 17 16 37 37 H 1.09003 * 110.55322 * 241.41100 * 20 19 17 38 38 H 1.09001 * 110.55486 * 118.58571 * 20 19 17 39 39 H 1.08997 * 109.56606 * 58.38463 * 23 15 14 40 40 H 1.09000 * 109.66697 * 298.08658 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.1900 -0.7026 5 6 3.4806 1.1100 -2.0249 6 1 4.1188 1.8635 -2.4622 7 6 3.0118 0.0605 -2.8031 8 7 1.9277 -0.5929 -2.4427 9 14 3.9199 -0.4246 -4.3618 10 1 5.3094 -0.8230 -4.0216 11 1 3.2220 -1.5660 -5.0064 12 1 3.9504 0.7292 -5.2963 13 6 3.2504 2.4650 0.0095 14 6 4.6436 2.5757 0.6323 15 7 4.7608 3.8543 1.3458 16 6 4.2374 4.9618 0.5321 17 6 4.4219 6.2871 1.3147 18 1 3.9539 7.1316 0.8088 19 6 3.8896 6.0846 2.7532 20 6 5.1100 5.5322 3.5241 21 6 6.2258 5.4698 2.4541 22 1 7.2121 5.6596 2.8772 23 6 6.1512 4.1043 1.7544 24 8 5.8466 6.4718 1.4823 25 1 -1.0503 -0.0004 0.0000 26 1 3.0097 -0.8943 -0.5048 27 1 3.0092 0.0111 1.0276 28 1 1.6003 -1.3266 -2.9863 29 1 2.4964 2.5128 0.7951 30 1 3.0989 3.2871 -0.6900 31 1 5.3976 2.5278 -0.1534 32 1 4.7952 1.7537 1.3318 33 1 4.7819 5.0110 -0.4108 34 1 3.1779 4.8003 0.3339 35 1 3.5660 7.0345 3.1789 36 1 3.0731 5.3625 2.7610 37 1 4.8978 4.5365 3.9138 38 1 5.3908 6.2084 4.3315 39 1 6.7949 4.1090 0.8749 40 1 6.4776 3.3237 2.4416 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374068310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:40 Heat of formation + Delta-G solvation = 52.762705 kcal Electronic energy + Delta-G solvation = -20591.422341 eV Core-core repulsion = 17602.036765 eV Total energy + Delta-G solvation = -2989.385577 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.62853 -36.79425 -35.15519 -32.05274 -31.54967 -31.50143 -31.08375 -28.27468 -26.09109 -25.33278 -24.45497 -22.50969 -21.14502 -20.34683 -19.36225 -17.47135 -16.97503 -16.28374 -15.72805 -15.30149 -15.02762 -14.54199 -14.00701 -13.98047 -13.78279 -13.32666 -13.03031 -12.83432 -12.66235 -12.16751 -11.74600 -11.62522 -11.40302 -11.18829 -11.09175 -10.96968 -10.79264 -10.73463 -10.43256 -10.36926 -10.10182 -9.99707 -9.50967 -8.91197 -8.73904 -8.43460 -8.04787 -6.98306 -5.79586 -3.22572 3.36488 3.43438 3.44157 3.90215 4.00886 4.28930 4.40441 4.54293 4.70848 4.78959 4.85073 4.91348 5.16077 5.32213 5.38542 5.48087 5.57700 5.64323 5.68358 5.82015 5.83724 5.88979 5.91703 5.97104 6.03896 6.07586 6.12296 6.24718 6.33401 6.64291 6.67441 6.82236 6.85478 7.19249 7.28929 7.33251 7.43352 7.74414 8.29352 9.09919 9.21396 9.76932 10.23978 11.23649 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.024872 B = 0.005107 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.474445 B = 5481.451486 C = 6113.843246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 C -0.095 4.095 3 C 0.269 3.731 4 N -0.586 5.586 5 C -0.269 4.269 6 H 0.071 0.929 7 C 0.006 3.994 8 N -0.885 5.885 9 Si 0.898 3.102 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.284 1.284 13 C 0.150 3.850 14 C 0.037 3.963 15 N -0.531 5.531 16 C 0.027 3.973 17 C 0.070 3.930 18 H 0.112 0.888 19 C -0.133 4.133 20 C -0.133 4.133 21 C 0.071 3.929 22 H 0.109 0.891 23 C 0.030 3.970 24 O -0.376 6.376 25 H 0.190 0.810 26 H 0.091 0.909 27 H 0.037 0.963 28 H 0.255 0.745 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.040 0.960 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.355 9.998 10.926 15.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.320 4.320 2 C -0.098 4.098 3 C 0.144 3.856 4 N -0.306 5.306 5 C -0.398 4.398 6 H 0.089 0.911 7 C -0.193 4.193 8 N -0.528 5.528 9 Si 0.727 3.273 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.210 1.210 13 C 0.022 3.978 14 C -0.093 4.093 15 N -0.257 5.257 16 C -0.102 4.102 17 C 0.012 3.988 18 H 0.130 0.870 19 C -0.171 4.171 20 C -0.171 4.171 21 C 0.013 3.987 22 H 0.127 0.873 23 C -0.099 4.099 24 O -0.295 6.295 25 H 0.207 0.793 26 H 0.109 0.891 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.147 9.967 11.116 15.792 hybrid contribution 0.474 -0.513 -1.768 1.901 sum 5.622 9.454 9.348 14.435 Atomic orbital electron populations 1.24176 0.95334 1.04619 1.07891 1.24283 0.95314 0.96408 0.93833 1.17717 0.82906 0.91811 0.93194 1.43974 1.74909 1.03599 1.08097 1.19093 1.24647 1.10337 0.85677 0.91108 1.24918 0.96047 1.00508 0.97850 1.70127 1.19283 1.23827 1.39539 0.86443 0.79638 0.78020 0.83150 1.21050 1.21658 1.21001 1.20844 0.92859 0.89106 0.94955 1.22892 1.00906 0.89266 0.96202 1.62222 1.18423 1.02782 1.42236 1.23100 1.01679 0.90592 0.94795 1.23783 0.81823 0.96891 0.96271 0.87049 1.22764 0.98988 1.00943 0.94390 1.22775 0.94698 1.02108 0.97490 1.23419 0.98858 0.87541 0.88841 0.87306 1.22766 0.90208 0.97222 0.99663 1.89222 1.22941 1.55542 1.61781 0.79293 0.89138 0.94487 0.93461 0.93754 0.93317 0.94708 0.91261 0.93935 0.89098 0.91865 0.89611 0.89790 0.91914 0.94189 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.95 19.25 29.55 0.57 -6.38 16 2 C -0.10 -2.34 11.50 -37.12 -0.43 -2.77 16 3 C 0.27 6.36 5.41 -6.83 -0.04 6.32 16 4 N -0.59 -14.16 2.49 -176.58 -0.44 -14.60 16 5 C -0.27 -7.17 9.63 -15.06 -0.14 -7.31 16 6 H 0.07 1.87 7.92 -52.49 -0.42 1.46 16 7 C 0.01 0.18 4.82 -17.43 -0.08 0.09 16 8 N -0.89 -25.16 9.61 55.49 0.53 -24.63 16 9 Si 0.90 21.46 29.61 -169.99 -5.03 16.42 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.15 3.01 4.92 -4.04 -0.02 2.99 16 14 C 0.04 0.64 5.61 -3.83 -0.02 0.62 16 15 N -0.53 -7.80 3.95 -232.65 -0.92 -8.72 16 16 C 0.03 0.38 4.27 -2.68 -0.01 0.37 16 17 C 0.07 0.87 4.76 -24.77 -0.12 0.75 16 18 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 19 C -0.13 -1.47 6.26 -25.01 -0.16 -1.63 16 20 C -0.13 -1.41 6.25 -25.01 -0.16 -1.57 16 21 C 0.07 0.84 4.68 -25.51 -0.12 0.72 16 22 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 23 C 0.03 0.39 5.10 -3.42 -0.02 0.38 16 24 O -0.38 -5.23 11.23 -35.23 -0.40 -5.63 16 25 H 0.19 3.66 7.80 -54.08 -0.42 3.24 16 26 H 0.09 2.32 6.59 -51.93 -0.34 1.98 16 27 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 28 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 30 H 0.05 1.00 6.27 -51.93 -0.33 0.68 16 31 H 0.03 0.66 8.05 -51.93 -0.42 0.24 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 1.32 6.34 -51.93 -0.33 0.99 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 1.00 7.87 -51.93 -0.41 0.60 16 37 H 0.08 0.92 7.85 -51.93 -0.41 0.51 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.04 0.57 8.10 -51.93 -0.42 0.15 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 318.94 15.07 4.81 4.81 Total: -1.00 -29.68 318.94 -8.61 -38.30 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.42 Total: 1.46 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -0.74 Total: -7.41 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -0.82 Total: -47.94 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.40 Total: -5.63 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.68 -8.61 -38.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374068310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.059 kcal (2) G-P(sol) polarization free energy of solvation -29.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds