Wall clock time and date at job start Sun Mar 29 2020 23:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42906 * 113.99759 * 2 1 4 4 H 1.09001 * 109.46899 * 9.34848 * 3 2 1 5 5 C 1.52994 * 109.47463 * 249.34634 * 3 2 1 6 6 N 1.46502 * 109.47255 * 62.42988 * 5 3 2 7 7 C 1.38829 * 120.00109 * 173.78419 * 6 5 3 8 8 C 1.39795 * 119.58012 * 359.72643 * 7 6 5 9 9 C 1.38596 * 119.48865 * 179.79434 * 8 7 6 10 10 C 1.38393 * 118.67869 * 0.47002 * 9 8 7 11 11 C 1.40558 * 119.14962 * 359.75848 * 10 9 8 12 12 C 1.41311 * 119.78164 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00599 * 0.02562 * 12 11 10 14 14 C 1.40034 * 119.99638 * 180.02562 * 12 11 10 15 15 N 1.30739 * 120.00035 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99867 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46828 * 90.00084 * 16 14 12 18 18 H 1.48500 * 109.46842 * 210.00038 * 16 14 12 19 19 H 1.48500 * 109.47276 * 330.00195 * 16 14 12 20 20 N 1.31953 * 119.58314 * 180.02562 * 7 6 5 21 21 C 1.53003 * 109.46794 * 129.34177 * 3 2 1 22 22 C 1.52994 * 109.46914 * 179.97438 * 21 3 2 23 23 C 1.52996 * 109.47118 * 300.00444 * 21 3 2 24 24 H 1.08997 * 109.47432 * 66.59745 * 1 2 3 25 25 H 1.08998 * 109.46437 * 186.60052 * 1 2 3 26 26 H 1.08997 * 109.46921 * 306.59323 * 1 2 3 27 27 H 1.08993 * 109.47511 * 182.43651 * 5 3 2 28 28 H 1.09010 * 109.46899 * 302.43186 * 5 3 2 29 29 H 0.96997 * 119.99834 * 353.77702 * 6 5 3 30 30 H 1.08001 * 120.25681 * 359.97438 * 8 7 6 31 31 H 1.08004 * 120.66221 * 180.22356 * 9 8 7 32 32 H 1.08005 * 120.42502 * 179.76891 * 10 9 8 33 33 H 0.97003 * 120.00373 * 180.02562 * 15 14 12 34 34 H 1.09002 * 109.46491 * 59.99950 * 21 3 2 35 35 H 1.09007 * 109.47085 * 60.00436 * 22 21 3 36 36 H 1.09003 * 109.47070 * 180.02562 * 22 21 3 37 37 H 1.08993 * 109.47478 * 300.00733 * 22 21 3 38 38 H 1.08993 * 109.47543 * 60.00085 * 23 21 3 39 39 H 1.09003 * 109.46981 * 180.02562 * 23 21 3 40 40 H 1.09001 * 109.47421 * 299.99846 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2316 2.0498 0.1669 5 6 2.6825 1.5646 -1.3497 6 7 1.6740 1.5321 -2.4118 7 6 2.0244 1.8685 -3.7124 8 6 3.3408 2.2426 -3.9975 9 6 3.6896 2.5740 -5.2973 10 6 2.7137 2.5332 -6.2777 11 6 1.4065 2.1538 -5.9272 12 6 0.3997 2.1071 -6.9177 13 1 0.6359 2.3620 -7.9402 14 6 -0.9042 1.7302 -6.5734 15 7 -1.1900 1.4210 -5.3356 16 14 -2.2353 1.6691 -7.8826 17 1 -2.2700 0.3146 -8.4903 18 1 -3.5518 1.9681 -7.2642 19 1 -1.9421 2.6760 -8.9340 20 7 1.1093 1.8369 -4.6625 21 6 3.0531 1.3995 1.1156 22 6 3.6758 2.7969 1.1153 23 6 2.3808 1.1404 2.4653 24 1 -0.3634 0.4082 -0.9431 25 1 -0.3632 -1.0209 0.1181 26 1 -0.3633 0.6126 0.8251 27 1 3.1629 2.5428 -1.3346 28 1 3.4316 0.7949 -1.5362 29 1 0.7614 1.2753 -2.2064 30 1 4.0811 2.2704 -3.2116 31 1 4.7019 2.8622 -5.5395 32 1 2.9535 2.7896 -7.2991 33 1 -2.0932 1.1596 -5.0971 34 1 3.8316 0.6551 0.9487 35 1 2.8974 3.5416 1.2819 36 1 4.4191 2.8637 1.9098 37 1 4.1548 2.9811 0.1537 38 1 1.9375 0.1447 2.4653 39 1 3.1237 1.2078 3.2602 40 1 1.6021 1.8847 2.6323 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116636480.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:55 Heat of formation + Delta-G solvation = -19.863388 kcal Electronic energy + Delta-G solvation = -20095.467589 eV Core-core repulsion = 17102.932708 eV Total energy + Delta-G solvation = -2992.534880 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.05366 -37.96054 -35.13406 -34.52734 -33.12716 -30.44442 -29.56641 -27.73352 -27.26719 -25.78882 -25.25005 -22.90991 -21.44169 -20.27911 -20.09602 -17.33452 -16.82262 -16.47516 -15.40148 -15.12336 -14.63332 -14.47662 -14.31974 -13.87789 -13.52687 -13.34844 -13.09740 -12.78502 -12.67463 -12.26982 -12.10724 -11.87502 -11.61836 -11.31965 -11.21723 -11.13295 -10.95993 -10.84033 -10.62266 -10.56142 -10.37811 -9.88736 -9.45513 -9.35521 -8.83581 -7.86948 -7.46987 -6.45734 -6.29524 -4.44025 2.90599 3.12500 3.15990 3.27890 3.33461 3.80852 4.00594 4.15342 4.78845 4.87828 4.92666 4.98725 5.21882 5.33190 5.47319 5.52671 5.55180 5.66523 5.75994 5.77936 5.84404 5.93770 6.00023 6.08430 6.16731 6.19590 6.22891 6.28325 6.62050 6.90232 6.93480 6.98573 7.28389 7.30371 7.64141 7.85679 7.96138 8.20369 8.40972 8.72581 8.84195 9.16299 10.28464 10.44157 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.023396 B = 0.004995 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.503574 B = 5604.579398 C = 6611.088983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.378 6.378 3 C 0.084 3.916 4 H 0.066 0.934 5 C 0.126 3.874 6 N -0.736 5.736 7 C 0.411 3.589 8 C -0.367 4.367 9 C -0.032 4.032 10 C -0.317 4.317 11 C 0.293 3.707 12 C -0.436 4.436 13 H 0.083 0.917 14 C 0.072 3.928 15 N -0.717 5.717 16 Si 0.904 3.096 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.262 1.262 20 N -0.532 5.532 21 C -0.098 4.098 22 C -0.151 4.151 23 C -0.143 4.143 24 H 0.048 0.952 25 H 0.083 0.917 26 H 0.038 0.962 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.392 0.608 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.268 0.732 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.817 -0.086 12.560 12.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.297 6.297 3 C 0.025 3.975 4 H 0.084 0.916 5 C 0.000 4.000 6 N -0.374 5.374 7 C 0.172 3.828 8 C -0.393 4.393 9 C -0.056 4.056 10 C -0.340 4.340 11 C 0.166 3.834 12 C -0.468 4.468 13 H 0.101 0.899 14 C -0.153 4.153 15 N -0.339 5.339 16 Si 0.729 3.271 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.186 1.186 20 N -0.254 5.254 21 C -0.117 4.117 22 C -0.208 4.208 23 C -0.201 4.201 24 H 0.066 0.934 25 H 0.102 0.898 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.227 0.773 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.091 -0.523 12.966 13.144 hybrid contribution -0.232 0.309 -0.703 0.802 sum 1.859 -0.214 12.264 12.405 Atomic orbital electron populations 1.22879 0.81070 1.02495 1.00216 1.87905 1.19538 1.27282 1.94963 1.22466 0.95608 0.85226 0.94181 0.91554 1.21583 0.91915 1.00799 0.85670 1.44108 1.11443 1.77154 1.04691 1.18537 0.89320 0.89277 0.85712 1.20602 0.96131 1.25446 0.97084 1.20592 0.96806 0.95333 0.92889 1.21530 0.95572 1.18662 0.98269 1.18198 0.90109 0.86409 0.88707 1.19575 0.92643 1.39295 0.95261 0.89922 1.26042 0.99747 0.93738 0.95748 1.70159 1.19552 1.26718 1.17506 0.86387 0.79776 0.79505 0.81447 1.19512 1.20291 1.18603 1.68210 1.31558 1.25742 0.99878 1.21256 0.97660 0.98316 0.94439 1.21921 1.00759 0.95704 1.02439 1.21767 1.00328 1.02015 0.95974 0.93369 0.89841 0.94311 0.91583 0.92703 0.77256 0.89243 0.88964 0.88742 0.92049 0.90194 0.92543 0.92297 0.91739 0.92024 0.92713 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.57 101.05 1.07 1.45 16 2 O -0.38 -5.61 9.52 -35.23 -0.34 -5.94 16 3 C 0.08 1.14 1.92 -26.73 -0.05 1.09 16 4 H 0.07 0.89 7.56 -51.93 -0.39 0.49 16 5 C 0.13 2.10 4.36 -4.04 -0.02 2.08 16 6 N -0.74 -15.52 5.65 -60.39 -0.34 -15.86 16 7 C 0.41 10.42 7.65 -155.32 -1.19 9.23 16 8 C -0.37 -8.74 9.31 -38.87 -0.36 -9.10 16 9 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 10 C -0.32 -8.23 9.83 -38.65 -0.38 -8.61 16 11 C 0.29 8.35 6.55 -85.00 -0.56 7.79 16 12 C -0.44 -12.03 9.14 -37.74 -0.34 -12.37 16 13 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 14 C 0.07 1.87 5.50 -17.34 -0.10 1.78 16 15 N -0.72 -19.34 11.46 55.55 0.64 -18.71 16 16 Si 0.90 18.96 29.56 -169.99 -5.02 13.94 16 17 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 18 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 19 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 20 N -0.53 -15.10 7.89 -10.33 -0.08 -15.18 16 21 C -0.10 -1.08 2.72 -90.62 -0.25 -1.33 16 22 C -0.15 -1.49 8.84 37.15 0.33 -1.16 16 23 C -0.14 -1.39 9.05 37.16 0.34 -1.06 16 24 H 0.05 0.69 6.43 -51.93 -0.33 0.36 16 25 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.04 0.42 8.03 -51.93 -0.42 0.00 16 27 H 0.07 1.05 5.73 -51.93 -0.30 0.76 16 28 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 29 H 0.39 8.27 6.55 -40.82 -0.27 8.01 16 30 H 0.09 1.89 6.65 -52.49 -0.35 1.54 16 31 H 0.09 1.88 8.06 -52.48 -0.42 1.45 16 32 H 0.09 2.27 8.06 -52.48 -0.42 1.85 16 33 H 0.27 6.55 8.29 -40.82 -0.34 6.21 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.68 6.37 -51.93 -0.33 0.34 16 38 H 0.06 0.64 7.68 -51.93 -0.40 0.24 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 325.23 15.07 4.90 4.90 Total: -1.00 -30.58 325.23 -8.29 -38.88 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -6.14 Total: 9.33 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -1.91 Total: -11.36 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.21 Total: -49.75 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.34 Total: -5.94 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.58 -8.29 -38.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636480.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.014 kcal (2) G-P(sol) polarization free energy of solvation -30.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds