Wall clock time and date at job start Sun Mar 29 2020 23:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42906 * 113.99759 * 2 1 4 4 H 1.09001 * 109.46899 * 9.34848 * 3 2 1 5 5 C 1.52994 * 109.47463 * 249.34634 * 3 2 1 6 6 N 1.46502 * 109.47255 * 62.42988 * 5 3 2 7 7 C 1.38829 * 120.00109 * 173.78419 * 6 5 3 8 8 C 1.39795 * 119.58012 * 359.72643 * 7 6 5 9 9 C 1.38596 * 119.48865 * 179.79434 * 8 7 6 10 10 C 1.38393 * 118.67869 * 0.47002 * 9 8 7 11 11 C 1.40558 * 119.14962 * 359.75848 * 10 9 8 12 12 C 1.41311 * 119.78164 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00599 * 0.02562 * 12 11 10 14 14 C 1.40034 * 119.99638 * 180.02562 * 12 11 10 15 15 N 1.30739 * 120.00035 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99867 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46828 * 90.00084 * 16 14 12 18 18 H 1.48500 * 109.46842 * 210.00038 * 16 14 12 19 19 H 1.48500 * 109.47276 * 330.00195 * 16 14 12 20 20 N 1.31953 * 119.58314 * 180.02562 * 7 6 5 21 21 C 1.53003 * 109.46794 * 129.34177 * 3 2 1 22 22 C 1.52994 * 109.46914 * 179.97438 * 21 3 2 23 23 C 1.52996 * 109.47118 * 300.00444 * 21 3 2 24 24 H 1.08997 * 109.47432 * 66.59745 * 1 2 3 25 25 H 1.08998 * 109.46437 * 186.60052 * 1 2 3 26 26 H 1.08997 * 109.46921 * 306.59323 * 1 2 3 27 27 H 1.08993 * 109.47511 * 182.43651 * 5 3 2 28 28 H 1.09010 * 109.46899 * 302.43186 * 5 3 2 29 29 H 0.96997 * 119.99834 * 353.77702 * 6 5 3 30 30 H 1.08001 * 120.25681 * 359.97438 * 8 7 6 31 31 H 1.08004 * 120.66221 * 180.22356 * 9 8 7 32 32 H 1.08005 * 120.42502 * 179.76891 * 10 9 8 33 33 H 0.97003 * 120.00373 * 180.02562 * 15 14 12 34 34 H 1.09002 * 109.46491 * 59.99950 * 21 3 2 35 35 H 1.09007 * 109.47085 * 60.00436 * 22 21 3 36 36 H 1.09003 * 109.47070 * 180.02562 * 22 21 3 37 37 H 1.08993 * 109.47478 * 300.00733 * 22 21 3 38 38 H 1.08993 * 109.47543 * 60.00085 * 23 21 3 39 39 H 1.09003 * 109.46981 * 180.02562 * 23 21 3 40 40 H 1.09001 * 109.47421 * 299.99846 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2316 2.0498 0.1669 5 6 2.6825 1.5646 -1.3497 6 7 1.6740 1.5321 -2.4118 7 6 2.0244 1.8685 -3.7124 8 6 3.3408 2.2426 -3.9975 9 6 3.6896 2.5740 -5.2973 10 6 2.7137 2.5332 -6.2777 11 6 1.4065 2.1538 -5.9272 12 6 0.3997 2.1071 -6.9177 13 1 0.6359 2.3620 -7.9402 14 6 -0.9042 1.7302 -6.5734 15 7 -1.1900 1.4210 -5.3356 16 14 -2.2353 1.6691 -7.8826 17 1 -2.2700 0.3146 -8.4903 18 1 -3.5518 1.9681 -7.2642 19 1 -1.9421 2.6760 -8.9340 20 7 1.1093 1.8369 -4.6625 21 6 3.0531 1.3995 1.1156 22 6 3.6758 2.7969 1.1153 23 6 2.3808 1.1404 2.4653 24 1 -0.3634 0.4082 -0.9431 25 1 -0.3632 -1.0209 0.1181 26 1 -0.3633 0.6126 0.8251 27 1 3.1629 2.5428 -1.3346 28 1 3.4316 0.7949 -1.5362 29 1 0.7614 1.2753 -2.2064 30 1 4.0811 2.2704 -3.2116 31 1 4.7019 2.8622 -5.5395 32 1 2.9535 2.7896 -7.2991 33 1 -2.0932 1.1596 -5.0971 34 1 3.8316 0.6551 0.9487 35 1 2.8974 3.5416 1.2819 36 1 4.4191 2.8637 1.9098 37 1 4.1548 2.9811 0.1537 38 1 1.9375 0.1447 2.4653 39 1 3.1237 1.2078 3.2602 40 1 1.6021 1.8847 2.6323 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116636480.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:54 Heat of formation + Delta-G solvation = -38.108333 kcal Electronic energy + Delta-G solvation = -20096.258749 eV Core-core repulsion = 17102.932708 eV Total energy + Delta-G solvation = -2993.326040 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.42678 -39.62856 -36.48266 -35.86963 -34.97309 -32.34502 -31.27872 -29.13789 -28.09005 -27.34931 -26.79914 -24.22686 -23.29141 -22.10486 -21.09570 -19.27311 -18.24154 -17.81458 -16.89707 -16.60940 -16.27230 -15.93472 -15.64457 -15.35168 -15.04926 -14.76047 -14.42914 -14.16433 -13.84097 -13.71918 -13.56795 -12.99183 -12.90687 -12.74704 -12.68696 -12.56641 -12.30250 -12.25457 -12.08343 -11.75847 -11.73928 -11.50753 -11.28375 -10.67296 -10.48120 -9.84379 -9.45255 -8.30855 -8.23282 -6.48613 1.05679 1.33875 1.41103 1.54335 1.58713 2.24948 2.59653 2.75729 2.92434 3.73877 3.94251 3.98959 4.04713 4.24929 4.36477 4.39562 4.47607 4.52020 4.55502 4.73690 4.75156 4.81665 4.82283 4.88036 4.99696 5.00112 5.01831 5.05762 5.12704 5.23533 5.36264 5.40133 5.45413 5.71312 5.95916 6.06353 6.21971 6.22489 6.54610 6.82170 6.92908 7.20361 8.33625 8.51081 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.023396 B = 0.004995 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.503574 B = 5604.579398 C = 6611.088983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.395 6.395 3 C 0.089 3.911 4 H 0.070 0.930 5 C 0.124 3.876 6 N -0.733 5.733 7 C 0.392 3.608 8 C -0.368 4.368 9 C -0.029 4.029 10 C -0.343 4.343 11 C 0.258 3.742 12 C -0.472 4.472 13 H 0.087 0.913 14 C 0.026 3.974 15 N -0.753 5.753 16 Si 0.987 3.013 17 H -0.264 1.264 18 H -0.268 1.268 19 H -0.256 1.256 20 N -0.566 5.566 21 C -0.093 4.093 22 C -0.149 4.149 23 C -0.139 4.139 24 H 0.025 0.975 25 H 0.097 0.903 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.048 0.952 29 H 0.389 0.611 30 H 0.117 0.883 31 H 0.131 0.869 32 H 0.103 0.897 33 H 0.276 0.724 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.076 0.173 13.575 13.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.314 6.314 3 C 0.030 3.970 4 H 0.088 0.912 5 C -0.001 4.001 6 N -0.369 5.369 7 C 0.151 3.849 8 C -0.394 4.394 9 C -0.053 4.053 10 C -0.366 4.366 11 C 0.131 3.869 12 C -0.504 4.504 13 H 0.105 0.895 14 C -0.195 4.195 15 N -0.376 5.376 16 Si 0.807 3.193 17 H -0.189 1.189 18 H -0.192 1.192 19 H -0.180 1.180 20 N -0.289 5.289 21 C -0.112 4.112 22 C -0.206 4.206 23 C -0.197 4.197 24 H 0.044 0.956 25 H 0.115 0.885 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.224 0.776 30 H 0.135 0.865 31 H 0.148 0.852 32 H 0.121 0.879 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.381 -0.264 14.024 14.227 hybrid contribution -0.220 0.217 -0.916 0.967 sum 2.160 -0.047 13.108 13.285 Atomic orbital electron populations 1.22965 0.80229 1.03729 0.99868 1.87885 1.20567 1.27977 1.94951 1.22504 0.96237 0.84944 0.93280 0.91241 1.21839 0.91199 1.01111 0.85933 1.44320 1.12255 1.76099 1.04225 1.19016 0.89888 0.89263 0.86725 1.20947 0.96116 1.24304 0.98014 1.21012 0.98124 0.93841 0.92337 1.21703 0.95493 1.20017 0.99432 1.18697 0.91586 0.87258 0.89352 1.19950 0.93971 1.40916 0.95564 0.89489 1.26971 1.01694 0.92669 0.98207 1.70256 1.20546 1.27135 1.19623 0.85153 0.76343 0.79671 0.78139 1.18873 1.19224 1.17956 1.68185 1.33093 1.27095 1.00498 1.21247 0.96801 0.99063 0.94095 1.21916 1.01182 0.94826 1.02713 1.21735 1.00813 1.01692 0.95435 0.95614 0.88504 0.92081 0.90559 0.93343 0.77613 0.86477 0.85164 0.87850 0.91378 0.90534 0.92261 0.90440 0.92555 0.92805 0.91029 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.57 113.37 1.20 1.91 16 2 O -0.39 -11.41 9.52 -148.98 -1.42 -12.83 16 3 C 0.09 2.32 1.92 30.59 0.06 2.38 16 4 H 0.07 1.77 7.56 -2.39 -0.02 1.76 16 5 C 0.12 4.02 4.36 86.38 0.38 4.40 16 6 N -0.73 -31.18 5.65 -344.99 -1.95 -33.12 16 7 C 0.39 20.08 7.65 133.42 1.02 21.10 16 8 C -0.37 -17.25 9.31 22.73 0.21 -17.03 16 9 C -0.03 -1.35 10.15 22.39 0.23 -1.12 16 10 C -0.34 -18.04 9.83 22.87 0.22 -17.82 16 11 C 0.26 15.17 6.55 40.18 0.26 15.43 16 12 C -0.47 -26.81 9.14 23.46 0.21 -26.60 16 13 H 0.09 4.63 7.85 -2.91 -0.02 4.61 16 14 C 0.03 1.38 5.50 85.29 0.47 1.85 16 15 N -0.75 -41.64 11.46 21.84 0.25 -41.39 16 16 Si 0.99 39.25 29.56 68.60 2.03 41.27 16 17 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 18 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 19 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 20 N -0.57 -33.05 7.89 -186.59 -1.47 -34.52 16 21 C -0.09 -1.87 2.72 -10.80 -0.03 -1.90 16 22 C -0.15 -2.59 8.84 71.98 0.64 -1.95 16 23 C -0.14 -2.36 9.05 71.98 0.65 -1.71 16 24 H 0.03 0.75 6.43 -2.39 -0.02 0.74 16 25 H 0.10 2.11 8.14 -2.39 -0.02 2.10 16 26 H 0.06 1.23 8.03 -2.39 -0.02 1.22 16 27 H 0.08 2.33 5.73 -2.39 -0.01 2.32 16 28 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.39 16.84 6.55 -92.71 -0.61 16.24 16 30 H 0.12 4.73 6.65 -2.91 -0.02 4.71 16 31 H 0.13 4.96 8.06 -2.91 -0.02 4.94 16 32 H 0.10 5.05 8.06 -2.91 -0.02 5.02 16 33 H 0.28 13.72 8.29 -92.71 -0.77 12.95 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 1.06 6.37 -2.39 -0.02 1.05 16 38 H 0.05 1.00 7.68 -2.39 -0.02 0.98 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -67.30 325.23 3.38 -63.92 By element: Atomic # 1 Polarization: 37.33 SS G_CDS: 0.42 Total: 37.75 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: 5.52 Total: -21.08 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -3.17 Total: -109.04 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -1.42 Total: -12.83 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.27 kcal Total: -67.30 3.38 -63.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636480.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.812 kcal (2) G-P(sol) polarization free energy of solvation -67.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds