Wall clock time and date at job start Sun Mar 29 2020 23:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42897 * 114.00158 * 2 1 4 4 H 1.09002 * 109.47068 * 32.46300 * 3 2 1 5 5 C 1.52999 * 109.47363 * 152.46358 * 3 2 1 6 6 N 1.46501 * 109.47141 * 299.99986 * 5 3 2 7 7 C 1.38821 * 120.00130 * 179.72220 * 6 5 3 8 8 C 1.39797 * 119.58312 * 0.02562 * 7 6 5 9 9 C 1.38593 * 119.49240 * 179.78934 * 8 7 6 10 10 C 1.38393 * 118.67887 * 0.47642 * 9 8 7 11 11 C 1.40553 * 119.14722 * 359.75085 * 10 9 8 12 12 C 1.41318 * 119.78152 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00210 * 0.02562 * 12 11 10 14 14 C 1.40035 * 119.99638 * 180.02562 * 12 11 10 15 15 N 1.30740 * 120.00199 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99498 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47489 * 59.99970 * 16 14 12 18 18 H 1.48503 * 109.46791 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47205 * 299.99187 * 16 14 12 20 20 N 1.31948 * 119.58502 * 180.28108 * 7 6 5 21 21 C 1.53004 * 109.47088 * 272.46686 * 3 2 1 22 22 C 1.53006 * 109.46860 * 176.87952 * 21 3 2 23 23 C 1.53002 * 109.46832 * 296.87756 * 21 3 2 24 24 H 1.08996 * 109.47473 * 295.27418 * 1 2 3 25 25 H 1.08997 * 109.47672 * 55.27752 * 1 2 3 26 26 H 1.09008 * 109.47402 * 175.27771 * 1 2 3 27 27 H 1.09003 * 109.47386 * 180.02562 * 5 3 2 28 28 H 1.09002 * 109.47075 * 59.99947 * 5 3 2 29 29 H 0.97002 * 119.99643 * 0.02562 * 6 5 3 30 30 H 1.08004 * 120.25619 * 359.97438 * 8 7 6 31 31 H 1.07994 * 120.66406 * 180.23421 * 9 8 7 32 32 H 1.07994 * 120.42679 * 179.76745 * 10 9 8 33 33 H 0.97002 * 120.00164 * 180.02562 * 15 14 12 34 34 H 1.08994 * 109.47000 * 56.88445 * 21 3 2 35 35 H 1.09008 * 109.46614 * 66.46084 * 22 21 3 36 36 H 1.08995 * 109.46724 * 186.45403 * 22 21 3 37 37 H 1.08997 * 109.47331 * 306.45907 * 22 21 3 38 38 H 1.09001 * 109.47130 * 60.00570 * 23 21 3 39 39 H 1.09006 * 109.46698 * 180.02562 * 23 21 3 40 40 H 1.08995 * 109.47461 * 299.99827 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3658 1.9900 0.5516 5 6 3.3861 1.2511 0.6669 6 7 3.2417 0.7809 2.0468 7 6 4.3626 0.6437 2.8543 8 6 5.6249 0.9573 2.3418 9 6 6.7422 0.8239 3.1510 10 6 6.5728 0.3714 4.4478 11 6 5.2783 0.0678 4.9033 12 6 5.0900 -0.3958 6.2250 13 1 5.9391 -0.5153 6.8815 14 6 3.8022 -0.7001 6.6833 15 7 2.7742 -0.5549 5.8888 16 14 3.5533 -1.3121 8.4306 17 1 4.0422 -0.2880 9.3883 18 1 2.1083 -1.5603 8.6669 19 1 4.3110 -2.5743 8.6257 20 7 4.2237 0.2142 4.0941 21 6 2.1609 1.7966 -1.4412 22 6 2.7108 3.2244 -1.4385 23 6 3.1269 0.8795 -2.1941 24 1 -0.3634 0.4387 0.9292 25 1 -0.3634 0.5853 -0.8446 26 1 -0.3634 -1.0242 -0.0846 27 1 3.8293 2.2470 0.6673 28 1 4.0304 0.5665 0.1153 29 1 2.3634 0.5611 2.3949 30 1 5.7284 1.3038 1.3241 31 1 7.7259 1.0644 2.7757 32 1 7.4243 0.2534 5.1015 33 1 1.8821 -0.7654 6.2064 34 1 1.1885 1.7827 -1.9333 35 1 3.7296 3.2206 -1.0509 36 1 2.7105 3.6157 -2.4558 37 1 2.0840 3.8539 -0.8068 38 1 2.7351 -0.1377 -2.1960 39 1 3.2346 1.2297 -3.2207 40 1 4.0993 0.8934 -1.7019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116636481.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:57 Heat of formation + Delta-G solvation = -18.596295 kcal Electronic energy + Delta-G solvation = -20109.963103 eV Core-core repulsion = 17117.483168 eV Total energy + Delta-G solvation = -2992.479935 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.10427 -37.96178 -35.27595 -34.36954 -33.07489 -30.37586 -29.44998 -27.52632 -27.22370 -25.82847 -25.24844 -23.57379 -21.41405 -20.35056 -19.46650 -17.36329 -16.60009 -16.24718 -15.92287 -15.09261 -14.64514 -14.48924 -14.18831 -13.79798 -13.72625 -13.30455 -12.96992 -12.85668 -12.71844 -12.29690 -11.97396 -11.73641 -11.63624 -11.38679 -11.24723 -11.09784 -10.95526 -10.87444 -10.61679 -10.41188 -10.32232 -9.87708 -9.44279 -9.39233 -8.79521 -7.83584 -7.43073 -6.40850 -6.25787 -4.41054 2.94838 3.13744 3.16674 3.31068 3.36665 3.81816 4.03123 4.22318 4.69056 4.90546 4.91204 5.00757 5.20016 5.33226 5.37204 5.48082 5.59456 5.61683 5.71464 5.80401 5.86859 5.95648 5.99859 6.08535 6.18689 6.21510 6.26091 6.36037 6.64274 6.93445 6.96255 7.01671 7.27346 7.32113 7.67358 7.88812 7.99263 8.23770 8.44883 8.78234 8.87584 9.20243 10.32332 10.47875 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.023150 B = 0.005010 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.204561 B = 5587.864745 C = 6530.174134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.372 6.372 3 C 0.083 3.917 4 H 0.063 0.937 5 C 0.145 3.855 6 N -0.733 5.733 7 C 0.413 3.587 8 C -0.368 4.368 9 C -0.032 4.032 10 C -0.318 4.318 11 C 0.293 3.707 12 C -0.436 4.436 13 H 0.082 0.918 14 C 0.072 3.928 15 N -0.716 5.716 16 Si 0.904 3.096 17 H -0.266 1.266 18 H -0.279 1.279 19 H -0.266 1.266 20 N -0.532 5.532 21 C -0.113 4.113 22 C -0.150 4.150 23 C -0.146 4.146 24 H 0.042 0.958 25 H 0.036 0.964 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.396 0.604 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.269 0.731 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.068 4.014 -11.853 13.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.291 6.291 3 C 0.025 3.975 4 H 0.081 0.919 5 C 0.019 3.981 6 N -0.370 5.370 7 C 0.173 3.827 8 C -0.394 4.394 9 C -0.056 4.056 10 C -0.341 4.341 11 C 0.166 3.834 12 C -0.468 4.468 13 H 0.100 0.900 14 C -0.153 4.153 15 N -0.338 5.338 16 Si 0.729 3.271 17 H -0.191 1.191 18 H -0.204 1.204 19 H -0.190 1.190 20 N -0.254 5.254 21 C -0.133 4.133 22 C -0.207 4.207 23 C -0.203 4.203 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.102 0.898 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.231 0.769 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.902 3.689 -11.707 13.619 hybrid contribution 0.140 0.097 0.473 0.503 sum -5.762 3.786 -11.233 13.180 Atomic orbital electron populations 1.22763 0.81662 1.02489 0.99710 1.88009 1.19082 1.27154 1.94843 1.22443 0.95213 0.85028 0.94839 0.91872 1.21264 0.94486 0.99209 0.83153 1.44009 1.07610 1.75131 1.10251 1.18520 0.84975 0.89719 0.89463 1.20594 0.92896 1.25410 1.00512 1.20581 0.96035 0.95250 0.93747 1.21520 0.97905 1.17705 0.97018 1.18193 0.85909 0.87198 0.92088 1.19537 0.93443 1.37757 0.96097 0.89996 1.26042 0.96012 0.94411 0.98844 1.70152 0.99112 1.29918 1.34604 0.86454 0.77845 0.80084 0.82736 1.19054 1.20402 1.19026 1.68215 1.32398 1.23417 1.01334 1.21536 1.00013 0.95765 0.95961 1.21888 1.01788 0.95294 1.01768 1.21828 0.99510 0.99804 0.99169 0.93959 0.94516 0.89835 0.91805 0.92037 0.76946 0.89327 0.89019 0.88788 0.91970 0.91149 0.91816 0.92499 0.92588 0.91943 0.93133 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.79 101.05 1.09 1.44 16 2 O -0.37 -5.52 9.55 -35.23 -0.34 -5.86 16 3 C 0.08 1.12 1.97 -26.73 -0.05 1.07 16 4 H 0.06 0.83 7.86 -51.93 -0.41 0.42 16 5 C 0.14 2.39 3.86 -4.04 -0.02 2.37 16 6 N -0.73 -15.57 5.61 -60.39 -0.34 -15.91 16 7 C 0.41 10.51 7.65 -155.33 -1.19 9.33 16 8 C -0.37 -8.80 9.34 -38.87 -0.36 -9.16 16 9 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 10 C -0.32 -8.31 9.83 -38.65 -0.38 -8.69 16 11 C 0.29 8.42 6.55 -85.00 -0.56 7.86 16 12 C -0.44 -12.13 9.14 -37.74 -0.34 -12.48 16 13 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 14 C 0.07 1.89 5.50 -17.34 -0.10 1.79 16 15 N -0.72 -19.54 11.46 55.55 0.64 -18.91 16 16 Si 0.90 19.13 29.56 -169.99 -5.02 14.11 16 17 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 18 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 20 N -0.53 -15.21 7.89 -10.33 -0.08 -15.30 16 21 C -0.11 -1.23 2.87 -90.61 -0.26 -1.49 16 22 C -0.15 -1.46 8.74 37.16 0.32 -1.13 16 23 C -0.15 -1.61 8.64 37.16 0.32 -1.29 16 24 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.04 0.35 7.54 -51.93 -0.39 -0.05 16 26 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 27 H 0.06 1.01 6.45 -51.93 -0.33 0.68 16 28 H 0.06 1.06 6.13 -51.93 -0.32 0.74 16 29 H 0.40 8.57 8.47 -40.82 -0.35 8.23 16 30 H 0.09 1.88 6.68 -52.48 -0.35 1.53 16 31 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 32 H 0.09 2.28 8.06 -52.49 -0.42 1.85 16 33 H 0.27 6.69 8.29 -40.82 -0.34 6.35 16 34 H 0.07 0.70 7.56 -51.93 -0.39 0.31 16 35 H 0.06 0.65 6.85 -51.92 -0.36 0.30 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.75 7.77 -51.93 -0.40 0.34 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.73 6.37 -51.93 -0.33 0.40 16 LS Contribution 325.06 15.07 4.90 4.90 Total: -1.00 -30.86 325.06 -8.30 -39.17 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -6.14 Total: 9.34 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -1.92 Total: -11.54 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.22 Total: -50.11 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.34 Total: -5.86 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.86 -8.30 -39.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636481.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.569 kcal (2) G-P(sol) polarization free energy of solvation -30.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds