Wall clock time and date at job start Sun Mar 29 2020 23:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42897 * 114.00158 * 2 1 4 4 H 1.09002 * 109.47068 * 32.46300 * 3 2 1 5 5 C 1.52999 * 109.47363 * 152.46358 * 3 2 1 6 6 N 1.46501 * 109.47141 * 299.99986 * 5 3 2 7 7 C 1.38821 * 120.00130 * 179.72220 * 6 5 3 8 8 C 1.39797 * 119.58312 * 0.02562 * 7 6 5 9 9 C 1.38593 * 119.49240 * 179.78934 * 8 7 6 10 10 C 1.38393 * 118.67887 * 0.47642 * 9 8 7 11 11 C 1.40553 * 119.14722 * 359.75085 * 10 9 8 12 12 C 1.41318 * 119.78152 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00210 * 0.02562 * 12 11 10 14 14 C 1.40035 * 119.99638 * 180.02562 * 12 11 10 15 15 N 1.30740 * 120.00199 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99498 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47489 * 59.99970 * 16 14 12 18 18 H 1.48503 * 109.46791 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47205 * 299.99187 * 16 14 12 20 20 N 1.31948 * 119.58502 * 180.28108 * 7 6 5 21 21 C 1.53004 * 109.47088 * 272.46686 * 3 2 1 22 22 C 1.53006 * 109.46860 * 176.87952 * 21 3 2 23 23 C 1.53002 * 109.46832 * 296.87756 * 21 3 2 24 24 H 1.08996 * 109.47473 * 295.27418 * 1 2 3 25 25 H 1.08997 * 109.47672 * 55.27752 * 1 2 3 26 26 H 1.09008 * 109.47402 * 175.27771 * 1 2 3 27 27 H 1.09003 * 109.47386 * 180.02562 * 5 3 2 28 28 H 1.09002 * 109.47075 * 59.99947 * 5 3 2 29 29 H 0.97002 * 119.99643 * 0.02562 * 6 5 3 30 30 H 1.08004 * 120.25619 * 359.97438 * 8 7 6 31 31 H 1.07994 * 120.66406 * 180.23421 * 9 8 7 32 32 H 1.07994 * 120.42679 * 179.76745 * 10 9 8 33 33 H 0.97002 * 120.00164 * 180.02562 * 15 14 12 34 34 H 1.08994 * 109.47000 * 56.88445 * 21 3 2 35 35 H 1.09008 * 109.46614 * 66.46084 * 22 21 3 36 36 H 1.08995 * 109.46724 * 186.45403 * 22 21 3 37 37 H 1.08997 * 109.47331 * 306.45907 * 22 21 3 38 38 H 1.09001 * 109.47130 * 60.00570 * 23 21 3 39 39 H 1.09006 * 109.46698 * 180.02562 * 23 21 3 40 40 H 1.08995 * 109.47461 * 299.99827 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3658 1.9900 0.5516 5 6 3.3861 1.2511 0.6669 6 7 3.2417 0.7809 2.0468 7 6 4.3626 0.6437 2.8543 8 6 5.6249 0.9573 2.3418 9 6 6.7422 0.8239 3.1510 10 6 6.5728 0.3714 4.4478 11 6 5.2783 0.0678 4.9033 12 6 5.0900 -0.3958 6.2250 13 1 5.9391 -0.5153 6.8815 14 6 3.8022 -0.7001 6.6833 15 7 2.7742 -0.5549 5.8888 16 14 3.5533 -1.3121 8.4306 17 1 4.0422 -0.2880 9.3883 18 1 2.1083 -1.5603 8.6669 19 1 4.3110 -2.5743 8.6257 20 7 4.2237 0.2142 4.0941 21 6 2.1609 1.7966 -1.4412 22 6 2.7108 3.2244 -1.4385 23 6 3.1269 0.8795 -2.1941 24 1 -0.3634 0.4387 0.9292 25 1 -0.3634 0.5853 -0.8446 26 1 -0.3634 -1.0242 -0.0846 27 1 3.8293 2.2470 0.6673 28 1 4.0304 0.5665 0.1153 29 1 2.3634 0.5611 2.3949 30 1 5.7284 1.3038 1.3241 31 1 7.7259 1.0644 2.7757 32 1 7.4243 0.2534 5.1015 33 1 1.8821 -0.7654 6.2064 34 1 1.1885 1.7827 -1.9333 35 1 3.7296 3.2206 -1.0509 36 1 2.7105 3.6157 -2.4558 37 1 2.0840 3.8539 -0.8068 38 1 2.7351 -0.1377 -2.1960 39 1 3.2346 1.2297 -3.2207 40 1 4.0993 0.8934 -1.7019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116636481.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:56 Heat of formation + Delta-G solvation = -37.387474 kcal Electronic energy + Delta-G solvation = -20110.777950 eV Core-core repulsion = 17117.483168 eV Total energy + Delta-G solvation = -2993.294782 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.41240 -39.65901 -36.59617 -35.77948 -34.90788 -32.30386 -31.18640 -28.84889 -28.08925 -27.25030 -26.86841 -24.77878 -23.32140 -22.20732 -20.50968 -19.28472 -18.04352 -17.59716 -17.21312 -16.57067 -16.32382 -15.95847 -15.61567 -15.26403 -15.02057 -14.66340 -14.45796 -14.17868 -13.86897 -13.79160 -13.60170 -12.93234 -12.80790 -12.72070 -12.69387 -12.55668 -12.32419 -12.21558 -12.10896 -11.77003 -11.73903 -11.43171 -11.23744 -10.63682 -10.43364 -9.82266 -9.42937 -8.26597 -8.21186 -6.47136 1.08283 1.36086 1.41488 1.53796 1.60322 2.25908 2.64054 2.81910 2.94274 3.71626 3.91204 4.01980 4.07392 4.30848 4.32909 4.38972 4.49198 4.53822 4.63416 4.69899 4.76966 4.83010 4.85121 4.90131 5.01125 5.01726 5.03493 5.06815 5.14015 5.20700 5.37567 5.43016 5.45865 5.73141 5.97618 6.08585 6.23504 6.27271 6.57723 6.84602 6.95948 7.23409 8.36300 8.52999 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.023150 B = 0.005010 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.204561 B = 5587.864745 C = 6530.174134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.088 3.912 4 H 0.067 0.933 5 C 0.143 3.857 6 N -0.730 5.730 7 C 0.394 3.606 8 C -0.368 4.368 9 C -0.029 4.029 10 C -0.345 4.345 11 C 0.259 3.741 12 C -0.473 4.473 13 H 0.087 0.913 14 C 0.026 3.974 15 N -0.753 5.753 16 Si 0.987 3.013 17 H -0.259 1.259 18 H -0.269 1.269 19 H -0.260 1.260 20 N -0.567 5.567 21 C -0.106 4.106 22 C -0.149 4.149 23 C -0.145 4.145 24 H 0.039 0.961 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.391 0.609 30 H 0.117 0.883 31 H 0.130 0.870 32 H 0.103 0.897 33 H 0.275 0.725 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.411 4.599 -12.791 14.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C 0.030 3.970 4 H 0.085 0.915 5 C 0.018 3.982 6 N -0.364 5.364 7 C 0.153 3.847 8 C -0.394 4.394 9 C -0.053 4.053 10 C -0.368 4.368 11 C 0.131 3.869 12 C -0.505 4.505 13 H 0.105 0.895 14 C -0.196 4.196 15 N -0.375 5.375 16 Si 0.807 3.193 17 H -0.183 1.183 18 H -0.193 1.193 19 H -0.184 1.184 20 N -0.290 5.290 21 C -0.125 4.125 22 C -0.206 4.206 23 C -0.202 4.202 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.109 0.891 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.224 0.776 30 H 0.135 0.865 31 H 0.148 0.852 32 H 0.121 0.879 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.246 4.293 -12.696 14.786 hybrid contribution 0.246 -0.052 0.617 0.667 sum -6.001 4.241 -12.079 14.138 Atomic orbital electron populations 1.22919 0.80002 1.03518 1.00560 1.87963 1.20994 1.27941 1.95094 1.22433 0.93357 0.84852 0.96392 0.91540 1.21500 0.96790 0.99178 0.80698 1.44210 1.06298 1.74389 1.11532 1.18993 0.86872 0.89494 0.89313 1.20940 0.92328 1.24391 1.01768 1.21004 0.97859 0.93624 0.92816 1.21693 0.97414 1.19190 0.98489 1.18695 0.87157 0.88049 0.92966 1.19924 0.94726 1.39305 0.96558 0.89487 1.26980 0.95058 0.93992 1.03569 1.70260 0.99712 1.30640 1.36931 0.85213 0.78165 0.79490 0.76453 1.18299 1.19304 1.18408 1.68188 1.33096 1.24918 1.02780 1.21501 1.00892 0.96224 0.93868 1.21888 1.01234 0.94492 1.03003 1.21811 0.98821 0.99258 1.00297 0.94279 0.92177 0.89089 0.90784 0.92583 0.77586 0.86497 0.85188 0.87887 0.91406 0.89582 0.92591 0.90669 0.92266 0.93238 0.91141 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.79 113.37 1.22 1.79 16 2 O -0.40 -11.59 9.55 -148.98 -1.42 -13.01 16 3 C 0.09 2.26 1.97 30.60 0.06 2.32 16 4 H 0.07 1.66 7.86 -2.39 -0.02 1.64 16 5 C 0.14 4.60 3.86 86.38 0.33 4.93 16 6 N -0.73 -31.25 5.61 -344.98 -1.94 -33.19 16 7 C 0.39 20.31 7.65 133.42 1.02 21.33 16 8 C -0.37 -17.32 9.34 22.73 0.21 -17.11 16 9 C -0.03 -1.35 10.15 22.39 0.23 -1.13 16 10 C -0.34 -18.23 9.83 22.87 0.22 -18.01 16 11 C 0.26 15.30 6.55 40.18 0.26 15.56 16 12 C -0.47 -27.09 9.14 23.46 0.21 -26.87 16 13 H 0.09 4.65 7.85 -2.91 -0.02 4.63 16 14 C 0.03 1.36 5.50 85.29 0.47 1.83 16 15 N -0.75 -42.18 11.46 21.84 0.25 -41.93 16 16 Si 0.99 39.62 29.56 68.60 2.03 41.65 16 17 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 18 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 19 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 20 N -0.57 -33.40 7.89 -186.59 -1.47 -34.87 16 21 C -0.11 -2.05 2.87 -10.79 -0.03 -2.08 16 22 C -0.15 -2.50 8.74 71.98 0.63 -1.87 16 23 C -0.14 -2.92 8.64 71.98 0.62 -2.30 16 24 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.06 1.00 7.54 -2.39 -0.02 0.98 16 26 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 27 H 0.07 2.24 6.45 -2.39 -0.02 2.23 16 28 H 0.06 1.88 6.13 -2.39 -0.01 1.87 16 29 H 0.39 17.33 8.47 -92.71 -0.79 16.54 16 30 H 0.12 4.72 6.68 -2.91 -0.02 4.70 16 31 H 0.13 4.98 8.06 -2.91 -0.02 4.95 16 32 H 0.10 5.06 8.06 -2.91 -0.02 5.04 16 33 H 0.28 13.96 8.29 -92.71 -0.77 13.19 16 34 H 0.09 1.45 7.56 -2.39 -0.02 1.43 16 35 H 0.06 1.02 6.85 -2.38 -0.02 1.01 16 36 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.05 1.12 7.77 -2.39 -0.02 1.10 16 39 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.05 1.13 6.37 -2.39 -0.02 1.11 16 Total: -1.00 -68.23 325.06 3.16 -65.07 By element: Atomic # 1 Polarization: 37.65 SS G_CDS: 0.25 Total: 37.90 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: 5.47 Total: -21.60 kcal Atomic # 7 Polarization: -106.84 SS G_CDS: -3.16 Total: -109.99 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -1.42 Total: -13.01 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -68.23 3.16 -65.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636481.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.680 kcal (2) G-P(sol) polarization free energy of solvation -68.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds