Wall clock time and date at job start Sun Mar 29 2020 23:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.46989 * 2 1 4 4 C 1.50697 * 109.46912 * 119.99998 * 2 1 3 5 5 N 1.33474 * 125.49501 * 120.00445 * 4 2 1 6 6 C 1.30330 * 109.72386 * 180.02562 * 5 4 2 7 7 N 1.34672 * 108.04676 * 359.94061 * 6 5 4 8 8 N 1.30967 * 125.49984 * 300.01976 * 4 2 1 9 9 C 1.46297 * 125.04660 * 180.10689 * 7 6 5 10 10 C 1.53297 * 108.77583 * 16.99136 * 9 7 6 11 11 C 1.53157 * 109.49248 * 309.88087 * 10 9 7 12 12 C 1.50935 * 127.90031 * 179.88531 * 6 5 4 13 13 H 1.08998 * 109.75042 * 76.29851 * 12 6 5 14 14 N 1.46903 * 109.71884 * 315.67755 * 12 6 5 15 15 C 1.46899 * 110.99960 * 86.25481 * 14 12 6 16 16 C 1.50704 * 109.46758 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00068 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99669 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00036 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99716 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47302 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47121 * 120.00064 * 20 18 16 23 23 H 1.48502 * 109.46983 * 240.00168 * 20 18 16 24 24 H 1.09004 * 109.47241 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47120 * 299.99983 * 1 2 3 26 26 H 1.08997 * 109.47289 * 60.00057 * 1 2 3 27 27 H 1.08996 * 109.46450 * 240.00139 * 2 1 3 28 28 H 1.09006 * 109.47306 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47725 * 300.00189 * 3 2 1 30 30 H 1.09001 * 109.47630 * 60.00329 * 3 2 1 31 31 H 1.09000 * 109.58924 * 136.78466 * 9 7 6 32 32 H 1.09003 * 109.58332 * 257.20318 * 9 7 6 33 33 H 1.09004 * 109.46983 * 69.89156 * 10 9 7 34 34 H 1.09000 * 109.46818 * 189.87578 * 10 9 7 35 35 H 1.09000 * 109.51046 * 189.11211 * 11 10 9 36 36 H 1.09001 * 109.51023 * 309.20095 * 11 10 9 37 37 H 1.00902 * 110.99497 * 322.30231 * 14 12 6 38 38 H 1.08997 * 109.47615 * 299.99837 * 15 14 12 39 39 H 1.09004 * 109.46854 * 60.00137 * 15 14 12 40 40 H 0.97000 * 119.99715 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.8030 -1.8002 1.2359 6 6 3.0536 -2.1556 2.4645 7 7 2.4377 -1.2832 3.2850 8 7 1.7829 -0.3583 2.4670 9 6 2.4760 -1.3340 4.7466 10 6 3.6360 -2.2384 5.1786 11 6 3.5570 -3.5675 4.4218 12 6 3.8783 -3.3264 2.9411 13 1 4.9385 -3.1009 2.8267 14 7 3.5390 -4.5228 2.1590 15 6 4.3322 -4.5870 0.9242 16 6 3.9578 -5.8249 0.1506 17 1 3.2055 -6.4965 0.5373 18 6 4.5756 -6.1001 -1.0509 19 7 5.4920 -5.2825 -1.5215 20 14 4.1111 -7.6341 -2.0103 21 1 3.0630 -8.3821 -1.2705 22 1 3.5923 -7.2445 -3.3460 23 1 5.3091 -8.4956 -2.1766 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 2.6279 -0.3302 5.1433 32 1 1.5368 -1.7396 5.1228 33 1 4.5828 -1.7476 4.9531 34 1 3.5705 -2.4262 6.2503 35 1 4.2785 -4.2687 4.8412 36 1 2.5524 -3.9801 4.5145 37 1 2.5510 -4.5539 1.9563 38 1 4.1316 -3.7042 0.3172 39 1 5.3924 -4.6224 1.1749 40 1 5.9269 -5.4763 -2.3666 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591753621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:48 Heat of formation + Delta-G solvation = 70.530418 kcal Electronic energy + Delta-G solvation = -20405.173104 eV Core-core repulsion = 17448.850745 eV Total energy + Delta-G solvation = -2956.322360 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.165 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.03430 -37.48148 -35.30736 -34.72453 -32.66013 -31.13040 -29.73617 -28.68713 -27.08925 -25.95706 -23.66897 -22.89688 -22.17707 -21.31386 -19.61304 -19.05440 -16.68455 -16.33890 -15.96204 -15.19353 -14.84161 -14.66755 -14.26758 -14.05162 -13.95564 -13.49666 -13.18609 -12.66706 -12.24391 -12.17362 -11.98916 -11.93854 -11.53525 -11.35421 -11.34773 -11.10264 -11.07458 -10.81119 -10.77428 -10.68345 -10.47927 -9.85410 -9.51691 -9.37599 -9.09472 -9.01252 -8.43000 -7.43354 -5.93846 -3.94738 1.91571 2.54159 3.27566 3.36379 3.43265 3.48117 4.17950 4.35687 4.47400 4.59927 4.80872 4.81653 4.98296 5.10253 5.24349 5.28246 5.40821 5.42610 5.48003 5.53700 5.68036 5.69116 5.71345 5.81710 5.87885 5.97537 6.04422 6.11204 6.24989 6.30060 6.37029 6.72842 6.79475 7.09381 7.25709 7.68496 7.82107 8.17683 8.31313 8.54452 8.61182 9.12883 9.68252 11.17267 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.015772 B = 0.006202 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.916338 B = 4513.494911 C = 5855.589867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.001 4.001 3 C -0.139 4.139 4 C 0.223 3.777 5 N -0.516 5.516 6 C 0.256 3.744 7 N -0.383 5.383 8 N -0.326 5.326 9 C 0.131 3.869 10 C -0.137 4.137 11 C -0.114 4.114 12 C 0.163 3.837 13 H 0.102 0.898 14 N -0.661 5.661 15 C 0.186 3.814 16 C -0.511 4.511 17 H 0.060 0.940 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.896 3.104 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.335 0.665 38 H 0.020 0.980 39 H 0.024 0.976 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.385 10.819 11.188 16.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.022 4.022 3 C -0.197 4.197 4 C -0.059 4.059 5 N -0.242 5.242 6 C -0.023 4.023 7 N -0.175 5.175 8 N -0.154 5.154 9 C 0.009 3.991 10 C -0.175 4.175 11 C -0.153 4.153 12 C 0.049 3.951 13 H 0.119 0.881 14 N -0.290 5.290 15 C 0.060 3.940 16 C -0.550 4.550 17 H 0.078 0.922 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.116 0.884 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.152 0.848 38 H 0.038 0.962 39 H 0.042 0.958 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.151 10.859 11.379 16.889 hybrid contribution -0.501 -0.195 -0.911 1.058 sum -6.652 10.664 10.469 16.357 Atomic orbital electron populations 1.21790 0.93642 1.02269 1.02060 1.19474 0.95770 0.94973 0.92014 1.21788 1.01326 0.94539 1.02082 1.24274 0.95584 0.92848 0.93235 1.70397 1.19213 1.14347 1.20213 1.26078 0.95729 0.94544 0.85939 1.50370 1.38617 1.21160 1.07363 1.77722 1.21321 1.14286 1.02055 1.21778 1.00463 1.01827 0.75077 1.22014 0.97874 0.96185 1.01474 1.21740 1.03743 0.96314 0.93455 1.20654 0.97260 0.83545 0.93672 0.88054 1.61025 1.10936 1.31325 1.25694 1.19775 0.92538 0.97429 0.84299 1.21162 1.22077 1.07491 1.04243 0.92216 1.24938 0.95235 0.96858 0.97390 1.69981 1.26280 1.36773 1.20377 0.86479 0.78242 0.83077 0.79798 1.19788 1.21145 1.21108 0.92468 0.92272 0.91789 0.88354 0.92560 0.91782 0.92264 0.89317 0.89933 0.90585 0.88775 0.89156 0.91007 0.84793 0.96237 0.95779 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.18 37.16 0.34 -1.43 16 2 C 0.00 -0.02 3.39 -91.77 -0.31 -0.33 16 3 C -0.14 -1.75 9.17 37.15 0.34 -1.41 16 4 C 0.22 4.10 6.65 -156.43 -1.04 3.06 16 5 N -0.52 -10.89 10.13 -8.03 -0.08 -10.97 16 6 C 0.26 4.76 6.97 -155.78 -1.09 3.67 16 7 N -0.38 -6.20 4.04 -58.29 -0.24 -6.43 16 8 N -0.33 -5.72 12.74 32.50 0.41 -5.31 16 9 C 0.13 1.44 7.30 -4.00 -0.03 1.42 16 10 C -0.14 -1.29 5.95 -26.50 -0.16 -1.45 16 11 C -0.11 -1.42 5.58 -26.43 -0.15 -1.57 16 12 C 0.16 2.85 2.86 -68.53 -0.20 2.65 16 13 H 0.10 1.83 7.80 -51.93 -0.41 1.42 16 14 N -0.66 -14.08 6.26 -108.86 -0.68 -14.76 16 15 C 0.19 4.92 5.23 -4.97 -0.03 4.89 16 16 C -0.51 -14.69 9.32 -34.44 -0.32 -15.01 16 17 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -27.20 13.29 55.43 0.74 -26.47 16 20 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.74 8.12 -51.93 -0.42 0.31 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.90 8.12 -51.93 -0.42 0.48 16 37 H 0.33 7.27 8.45 -39.29 -0.33 6.94 16 38 H 0.02 0.57 7.08 -51.93 -0.37 0.20 16 39 H 0.02 0.68 8.06 -51.93 -0.42 0.26 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 327.68 15.07 4.94 4.94 Total: -1.00 -33.44 327.68 -9.22 -42.66 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.56 Total: 3.22 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -2.73 Total: -3.94 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: 0.15 Total: -63.94 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.44 -9.22 -42.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591753621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.190 kcal (2) G-P(sol) polarization free energy of solvation -33.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds