Wall clock time and date at job start Sun Mar 29 2020 23:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.46989 * 2 1 4 4 C 1.50697 * 109.46912 * 119.99998 * 2 1 3 5 5 N 1.33474 * 125.49501 * 120.00445 * 4 2 1 6 6 C 1.30330 * 109.72386 * 180.02562 * 5 4 2 7 7 N 1.34672 * 108.04676 * 359.94061 * 6 5 4 8 8 N 1.30967 * 125.49984 * 300.01976 * 4 2 1 9 9 C 1.46297 * 125.04660 * 180.10689 * 7 6 5 10 10 C 1.53297 * 108.77583 * 16.99136 * 9 7 6 11 11 C 1.53157 * 109.49248 * 309.88087 * 10 9 7 12 12 C 1.50935 * 127.90031 * 179.88531 * 6 5 4 13 13 H 1.08998 * 109.75042 * 76.29851 * 12 6 5 14 14 N 1.46903 * 109.71884 * 315.67755 * 12 6 5 15 15 C 1.46899 * 110.99960 * 86.25481 * 14 12 6 16 16 C 1.50704 * 109.46758 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00068 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99669 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00036 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99716 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47302 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47121 * 120.00064 * 20 18 16 23 23 H 1.48502 * 109.46983 * 240.00168 * 20 18 16 24 24 H 1.09004 * 109.47241 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47120 * 299.99983 * 1 2 3 26 26 H 1.08997 * 109.47289 * 60.00057 * 1 2 3 27 27 H 1.08996 * 109.46450 * 240.00139 * 2 1 3 28 28 H 1.09006 * 109.47306 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47725 * 300.00189 * 3 2 1 30 30 H 1.09001 * 109.47630 * 60.00329 * 3 2 1 31 31 H 1.09000 * 109.58924 * 136.78466 * 9 7 6 32 32 H 1.09003 * 109.58332 * 257.20318 * 9 7 6 33 33 H 1.09004 * 109.46983 * 69.89156 * 10 9 7 34 34 H 1.09000 * 109.46818 * 189.87578 * 10 9 7 35 35 H 1.09000 * 109.51046 * 189.11211 * 11 10 9 36 36 H 1.09001 * 109.51023 * 309.20095 * 11 10 9 37 37 H 1.00902 * 110.99497 * 322.30231 * 14 12 6 38 38 H 1.08997 * 109.47615 * 299.99837 * 15 14 12 39 39 H 1.09004 * 109.46854 * 60.00137 * 15 14 12 40 40 H 0.97000 * 119.99715 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.8030 -1.8002 1.2359 6 6 3.0536 -2.1556 2.4645 7 7 2.4377 -1.2832 3.2850 8 7 1.7829 -0.3583 2.4670 9 6 2.4760 -1.3340 4.7466 10 6 3.6360 -2.2384 5.1786 11 6 3.5570 -3.5675 4.4218 12 6 3.8783 -3.3264 2.9411 13 1 4.9385 -3.1009 2.8267 14 7 3.5390 -4.5228 2.1590 15 6 4.3322 -4.5870 0.9242 16 6 3.9578 -5.8249 0.1506 17 1 3.2055 -6.4965 0.5373 18 6 4.5756 -6.1001 -1.0509 19 7 5.4920 -5.2825 -1.5215 20 14 4.1111 -7.6341 -2.0103 21 1 3.0630 -8.3821 -1.2705 22 1 3.5923 -7.2445 -3.3460 23 1 5.3091 -8.4956 -2.1766 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 2.6279 -0.3302 5.1433 32 1 1.5368 -1.7396 5.1228 33 1 4.5828 -1.7476 4.9531 34 1 3.5705 -2.4262 6.2503 35 1 4.2785 -4.2687 4.8412 36 1 2.5524 -3.9801 4.5145 37 1 2.5510 -4.5539 1.9563 38 1 4.1316 -3.7042 0.3172 39 1 5.3924 -4.6224 1.1749 40 1 5.9269 -5.4763 -2.3666 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591753621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:47 Heat of formation + Delta-G solvation = 47.620713 kcal Electronic energy + Delta-G solvation = -20406.166543 eV Core-core repulsion = 17448.850745 eV Total energy + Delta-G solvation = -2957.315799 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.165 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.38107 -38.73980 -36.79352 -35.90990 -34.67241 -32.70186 -30.96543 -30.17415 -28.10983 -27.79331 -24.97669 -24.21529 -23.69046 -22.94499 -20.85598 -20.31192 -18.53825 -17.82247 -17.26847 -16.76786 -16.48218 -15.97388 -15.52899 -15.46222 -15.16561 -14.65452 -14.49532 -14.12270 -13.98858 -13.54783 -13.32511 -13.14586 -13.00633 -12.88474 -12.69160 -12.46256 -12.33065 -12.19694 -12.09124 -12.00536 -11.91310 -11.70298 -11.21704 -10.90973 -10.77676 -10.63735 -10.29503 -9.28545 -8.17341 -6.27331 0.54486 1.38418 1.41419 1.42328 1.55770 1.86229 2.42410 2.88638 3.16230 3.27957 3.44685 3.61908 3.80246 3.92281 3.99017 4.14625 4.22955 4.29287 4.32524 4.42348 4.63918 4.73657 4.76218 4.82939 4.86899 4.92476 5.00660 5.09213 5.14419 5.24037 5.25095 5.26417 5.40365 5.47604 5.54872 5.62683 5.85090 6.04830 6.33316 6.58915 6.90516 7.18294 7.41455 8.94555 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.015772 B = 0.006202 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.916338 B = 4513.494911 C = 5855.589867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.008 4.008 3 C -0.129 4.129 4 C 0.208 3.792 5 N -0.570 5.570 6 C 0.242 3.758 7 N -0.373 5.373 8 N -0.328 5.328 9 C 0.117 3.883 10 C -0.124 4.124 11 C -0.104 4.104 12 C 0.160 3.840 13 H 0.087 0.913 14 N -0.654 5.654 15 C 0.205 3.795 16 C -0.532 4.532 17 H 0.061 0.939 18 C 0.002 3.998 19 N -0.932 5.932 20 Si 0.971 3.029 21 H -0.263 1.263 22 H -0.280 1.280 23 H -0.276 1.276 24 H 0.040 0.960 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.040 0.960 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.140 0.860 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.332 0.668 38 H -0.014 1.014 39 H -0.002 1.002 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.570 10.890 12.819 18.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.029 4.029 3 C -0.187 4.187 4 C -0.074 4.074 5 N -0.297 5.297 6 C -0.037 4.037 7 N -0.165 5.165 8 N -0.157 5.157 9 C -0.003 4.003 10 C -0.162 4.162 11 C -0.143 4.143 12 C 0.046 3.954 13 H 0.105 0.895 14 N -0.282 5.282 15 C 0.078 3.922 16 C -0.570 4.570 17 H 0.079 0.921 18 C -0.196 4.196 19 N -0.572 5.572 20 Si 0.795 3.205 21 H -0.187 1.187 22 H -0.206 1.206 23 H -0.202 1.202 24 H 0.059 0.941 25 H 0.081 0.919 26 H 0.111 0.889 27 H 0.098 0.902 28 H 0.059 0.941 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.128 0.872 32 H 0.121 0.879 33 H 0.093 0.907 34 H 0.158 0.842 35 H 0.121 0.879 36 H 0.094 0.906 37 H 0.149 0.851 38 H 0.004 0.996 39 H 0.016 0.984 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.346 10.943 13.068 18.560 hybrid contribution -0.121 -0.148 -1.347 1.361 sum -7.466 10.794 11.721 17.597 Atomic orbital electron populations 1.21727 0.91760 1.01651 1.03600 1.19670 0.97308 0.95858 0.90069 1.21726 1.00284 0.93084 1.03619 1.24846 0.95449 0.92524 0.94552 1.70346 1.20941 1.16106 1.22342 1.25981 0.96369 0.95321 0.86001 1.50702 1.36985 1.19796 1.09024 1.77633 1.21474 1.14701 1.01887 1.22349 1.02242 1.03766 0.71976 1.22038 0.97090 0.93656 1.03451 1.21714 1.04209 0.98669 0.89680 1.20861 0.96435 0.81939 0.96169 0.89483 1.60909 1.09964 1.34092 1.23215 1.19312 0.91646 0.95452 0.85804 1.21530 1.22223 1.08222 1.05019 0.92092 1.25904 0.94960 1.00317 0.98460 1.70118 1.27353 1.38825 1.20950 0.85322 0.78324 0.78792 0.78058 1.18710 1.20633 1.20160 0.94121 0.91929 0.88942 0.90174 0.94087 0.88936 0.91920 0.87171 0.87915 0.90745 0.84162 0.87879 0.90637 0.85122 0.99577 0.98435 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 9.18 71.98 0.66 -2.55 16 2 C -0.01 -0.24 3.39 -11.54 -0.04 -0.28 16 3 C -0.13 -3.17 9.17 71.98 0.66 -2.51 16 4 C 0.21 7.87 6.65 138.48 0.92 8.79 16 5 N -0.57 -25.21 10.13 -179.31 -1.82 -27.03 16 6 C 0.24 9.19 6.97 138.37 0.96 10.15 16 7 N -0.37 -11.75 4.04 -338.34 -1.37 -13.11 16 8 N -0.33 -11.42 12.74 -51.08 -0.65 -12.07 16 9 C 0.12 2.22 7.30 86.52 0.63 2.85 16 10 C -0.12 -1.91 5.95 30.75 0.18 -1.73 16 11 C -0.10 -2.39 5.58 30.79 0.17 -2.22 16 12 C 0.16 5.67 2.86 44.39 0.13 5.80 16 13 H 0.09 3.29 7.80 -2.39 -0.02 3.27 16 14 N -0.65 -28.74 6.26 -498.32 -3.12 -31.86 16 15 C 0.21 11.43 5.23 85.56 0.45 11.88 16 16 C -0.53 -31.39 9.32 25.60 0.24 -31.15 16 17 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16 18 C 0.00 0.10 5.46 84.66 0.46 0.56 16 19 N -0.93 -58.31 13.29 21.45 0.28 -58.03 16 20 Si 0.97 45.75 29.54 68.60 2.03 47.78 16 21 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 25 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 28 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 1.23 8.12 -2.38 -0.02 1.21 16 34 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.07 1.71 8.12 -2.39 -0.02 1.69 16 37 H 0.33 14.88 8.45 -89.69 -0.76 14.12 16 38 H -0.01 -0.84 7.08 -2.39 -0.02 -0.86 16 39 H 0.00 -0.15 8.06 -2.38 -0.02 -0.17 16 40 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -76.04 327.68 1.05 -74.99 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.26 Total: 19.75 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 5.43 Total: -0.41 kcal Atomic # 7 Polarization: -135.44 SS G_CDS: -6.67 Total: -142.10 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -76.04 1.05 -74.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591753621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.614 kcal (2) G-P(sol) polarization free energy of solvation -76.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds