Wall clock time and date at job start Mon Mar 30 2020 00:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46445 * 2 1 4 4 C 1.50697 * 109.47124 * 119.99637 * 2 1 3 5 5 H 1.07997 * 119.99779 * 119.99916 * 4 2 1 6 6 C 1.37881 * 120.00157 * 300.00817 * 4 2 1 7 7 N 1.31513 * 120.00149 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99935 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47119 * 359.97438 * 8 6 4 10 10 H 1.48490 * 109.47367 * 119.99592 * 8 6 4 11 11 H 1.48504 * 109.46848 * 239.99790 * 8 6 4 12 12 O 1.45198 * 109.47499 * 240.00341 * 2 1 3 13 13 C 1.34705 * 117.00408 * 89.99701 * 12 2 1 14 14 O 1.21470 * 120.00003 * 359.97438 * 13 12 2 15 15 C 1.47725 * 120.00295 * 180.02562 * 13 12 2 16 16 C 1.39630 * 120.15195 * 180.02562 * 15 13 12 17 17 C 1.37942 * 119.84607 * 179.97438 * 16 15 13 18 18 C 1.38367 * 120.15194 * 0.02562 * 17 16 15 19 19 N 1.48020 * 119.84785 * 179.97438 * 18 17 16 20 20 O 1.21803 * 119.99894 * 359.97438 * 19 18 17 21 21 O 1.21799 * 119.99903 * 179.72403 * 19 18 17 22 22 C 1.38365 * 120.30270 * 0.26841 * 18 17 16 23 23 C 1.37944 * 120.15074 * 359.44959 * 22 18 17 24 24 H 1.08999 * 109.47024 * 60.00472 * 1 2 3 25 25 H 1.08999 * 109.46474 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47466 * 299.99937 * 1 2 3 27 27 H 0.96991 * 120.00211 * 180.02562 * 7 6 4 28 28 H 1.08000 * 120.07525 * 359.95538 * 16 15 13 29 29 H 1.07998 * 119.92132 * 179.97438 * 17 16 15 30 30 H 1.07999 * 119.92199 * 179.71156 * 22 18 17 31 31 H 1.07997 * 120.07751 * 180.25042 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9433 0.8302 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.1475 -2.2861 3.6038 10 1 3.1471 -0.1857 4.8161 11 1 1.1677 -1.5866 4.8165 12 8 2.0141 -0.6844 -1.1855 13 6 2.2180 0.0667 -2.2850 14 8 1.9969 1.2608 -2.2544 15 6 2.7093 -0.5618 -3.5283 16 6 2.9222 0.2140 -4.6696 17 6 3.3815 -0.3794 -5.8271 18 6 3.6308 -1.7400 -5.8590 19 7 4.1231 -2.3698 -7.1048 20 8 4.3074 -1.6906 -8.0989 21 8 4.3482 -3.5665 -7.1344 22 6 3.4162 -2.5156 -4.7334 23 6 2.9626 -1.9343 -3.5676 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7093 1.1617 3.4843 28 1 2.7273 1.2760 -4.6463 29 1 3.5462 0.2194 -6.7107 30 1 3.6083 -3.5779 -4.7665 31 1 2.7993 -2.5402 -2.6886 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113693868.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:17:30 Heat of formation + Delta-G solvation = -67.553128 kcal Electronic energy + Delta-G solvation = -18979.504271 eV Core-core repulsion = 15615.516557 eV Total energy + Delta-G solvation = -3363.987714 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.37967 -40.32502 -38.86003 -36.76698 -36.01999 -33.48836 -32.41754 -31.71392 -29.74780 -27.24874 -25.47354 -23.83192 -23.33192 -21.76962 -20.17397 -19.58505 -18.85069 -17.87629 -17.73099 -16.85585 -16.11328 -15.44275 -15.27010 -15.16135 -14.68755 -14.15223 -13.78471 -13.41684 -12.97044 -12.43217 -12.12509 -11.84535 -11.69460 -11.41447 -11.39364 -11.33097 -11.22073 -10.99861 -10.52442 -10.42606 -10.13160 -9.87663 -9.76503 -9.70696 -9.08678 -8.63922 -6.32299 -4.40285 -0.58523 0.67779 0.92572 1.15510 2.48972 3.08571 3.15383 3.23739 3.29652 3.37392 4.08906 4.18100 4.20073 4.51464 4.59758 4.98368 5.01745 5.02985 5.34617 5.46370 5.58220 5.85680 5.93662 6.20673 6.42856 6.70195 6.71566 6.88874 7.39684 7.42897 7.54013 7.71319 7.95025 8.29395 8.68227 9.25886 10.75188 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.038063 B = 0.003865 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.455338 B = 7242.831058 C = 7741.821695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.216 3.784 3 H 0.050 0.950 4 C -0.525 4.525 5 H 0.071 0.929 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.913 3.087 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.280 1.280 12 O -0.346 6.346 13 C 0.490 3.510 14 O -0.501 6.501 15 C -0.056 4.056 16 C -0.063 4.063 17 C -0.066 4.066 18 C -0.028 4.028 19 N 0.027 4.973 20 O -0.160 6.160 21 O -0.157 6.157 22 C -0.066 4.066 23 C -0.063 4.063 24 H 0.017 0.983 25 H 0.039 0.961 26 H 0.102 0.898 27 H 0.267 0.733 28 H 0.162 0.838 29 H 0.160 0.840 30 H 0.160 0.840 31 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.332 -4.116 -12.967 14.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.164 3.836 3 H 0.068 0.932 4 C -0.563 4.563 5 H 0.089 0.911 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.740 3.260 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.206 1.206 12 O -0.262 6.262 13 C 0.333 3.667 14 O -0.392 6.392 15 C -0.058 4.058 16 C -0.081 4.081 17 C -0.085 4.085 18 C -0.110 4.110 19 N 0.547 4.453 20 O -0.376 6.376 21 O -0.374 6.374 22 C -0.085 4.085 23 C -0.081 4.081 24 H 0.036 0.964 25 H 0.058 0.942 26 H 0.120 0.880 27 H 0.077 0.923 28 H 0.179 0.821 29 H 0.178 0.822 30 H 0.178 0.822 31 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.917 -3.344 -12.143 12.929 hybrid contribution 0.302 -0.397 0.544 0.738 sum 3.219 -3.741 -11.599 12.605 Atomic orbital electron populations 1.22191 0.97215 1.00361 1.01642 1.20797 0.91593 0.94049 0.77161 0.93247 1.21026 1.32869 1.13718 0.88658 0.91097 1.24892 0.94786 0.95054 0.99145 1.69891 1.35827 1.22433 1.24345 0.86190 0.78690 0.79485 0.81621 1.19418 1.20657 1.20611 1.86543 1.75399 1.43181 1.21032 1.20789 0.75760 0.85403 0.84736 1.90814 1.47837 1.15936 1.84566 1.20004 0.98342 0.94297 0.93145 1.21369 0.95277 1.01807 0.89686 1.20976 0.95770 0.91792 1.00005 1.21384 1.09448 0.94374 0.85837 1.43657 0.98205 1.00973 1.02464 1.94540 1.55553 1.62858 1.24600 1.94546 1.54306 0.97820 1.90705 1.21082 0.95589 1.01811 0.90063 1.21690 0.94340 0.94045 0.98059 0.96427 0.94212 0.87967 0.92260 0.82076 0.82238 0.82207 0.81532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 9.33 37.16 0.35 -3.37 16 2 C 0.22 5.41 2.56 -27.88 -0.07 5.33 16 3 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 4 C -0.52 -13.87 8.90 -34.44 -0.31 -14.18 16 5 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.12 11.32 55.43 0.63 -23.49 16 8 Si 0.91 20.13 29.54 -169.99 -5.02 15.11 16 9 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 O -0.35 -7.39 9.12 -40.50 -0.37 -7.75 16 13 C 0.49 9.19 7.87 34.61 0.27 9.47 16 14 O -0.50 -10.66 15.61 -19.24 -0.30 -10.96 16 15 C -0.06 -0.78 5.87 -104.98 -0.62 -1.39 16 16 C -0.06 -0.71 9.60 -39.17 -0.38 -1.09 16 17 C -0.07 -0.67 9.54 -39.64 -0.38 -1.05 16 18 C -0.03 -0.31 6.86 -79.85 -0.55 -0.86 16 19 N 0.03 0.34 4.45 34.01 0.15 0.50 16 20 O -0.16 -2.09 18.43 -29.46 -0.54 -2.63 16 21 O -0.16 -2.07 18.43 -29.46 -0.54 -2.62 16 22 C -0.07 -0.68 9.54 -39.64 -0.38 -1.06 16 23 C -0.06 -0.72 9.62 -39.17 -0.38 -1.10 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.10 2.62 6.07 -51.93 -0.32 2.31 16 27 H 0.27 6.83 8.31 -40.82 -0.34 6.50 16 28 H 0.16 1.69 7.65 -52.49 -0.40 1.28 16 29 H 0.16 1.27 7.60 -52.49 -0.40 0.87 16 30 H 0.16 1.33 7.60 -52.49 -0.40 0.93 16 31 H 0.17 1.82 7.61 -52.49 -0.40 1.43 16 LS Contribution 289.30 15.07 4.36 4.36 Total: -1.00 -29.08 289.30 -6.84 -35.92 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -2.68 Total: -0.73 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -2.53 Total: -7.71 kcal Atomic # 7 Polarization: -23.77 SS G_CDS: 0.78 Total: -22.99 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -1.76 Total: -23.96 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.08 -6.84 -35.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113693868.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.630 kcal (2) G-P(sol) polarization free energy of solvation -29.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds