Wall clock time and date at job start Mon Mar 30 2020 00:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46445 * 2 1 4 4 C 1.50697 * 109.47124 * 119.99637 * 2 1 3 5 5 H 1.07997 * 119.99779 * 119.99916 * 4 2 1 6 6 C 1.37881 * 120.00157 * 300.00817 * 4 2 1 7 7 N 1.31513 * 120.00149 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99935 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47119 * 359.97438 * 8 6 4 10 10 H 1.48490 * 109.47367 * 119.99592 * 8 6 4 11 11 H 1.48504 * 109.46848 * 239.99790 * 8 6 4 12 12 O 1.45198 * 109.47499 * 240.00341 * 2 1 3 13 13 C 1.34705 * 117.00408 * 89.99701 * 12 2 1 14 14 O 1.21470 * 120.00003 * 359.97438 * 13 12 2 15 15 C 1.47725 * 120.00295 * 180.02562 * 13 12 2 16 16 C 1.39630 * 120.15195 * 180.02562 * 15 13 12 17 17 C 1.37942 * 119.84607 * 179.97438 * 16 15 13 18 18 C 1.38367 * 120.15194 * 0.02562 * 17 16 15 19 19 N 1.48020 * 119.84785 * 179.97438 * 18 17 16 20 20 O 1.21803 * 119.99894 * 359.97438 * 19 18 17 21 21 O 1.21799 * 119.99903 * 179.72403 * 19 18 17 22 22 C 1.38365 * 120.30270 * 0.26841 * 18 17 16 23 23 C 1.37944 * 120.15074 * 359.44959 * 22 18 17 24 24 H 1.08999 * 109.47024 * 60.00472 * 1 2 3 25 25 H 1.08999 * 109.46474 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47466 * 299.99937 * 1 2 3 27 27 H 0.96991 * 120.00211 * 180.02562 * 7 6 4 28 28 H 1.08000 * 120.07525 * 359.95538 * 16 15 13 29 29 H 1.07998 * 119.92132 * 179.97438 * 17 16 15 30 30 H 1.07999 * 119.92199 * 179.71156 * 22 18 17 31 31 H 1.07997 * 120.07751 * 180.25042 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9433 0.8302 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.1475 -2.2861 3.6038 10 1 3.1471 -0.1857 4.8161 11 1 1.1677 -1.5866 4.8165 12 8 2.0141 -0.6844 -1.1855 13 6 2.2180 0.0667 -2.2850 14 8 1.9969 1.2608 -2.2544 15 6 2.7093 -0.5618 -3.5283 16 6 2.9222 0.2140 -4.6696 17 6 3.3815 -0.3794 -5.8271 18 6 3.6308 -1.7400 -5.8590 19 7 4.1231 -2.3698 -7.1048 20 8 4.3074 -1.6906 -8.0989 21 8 4.3482 -3.5665 -7.1344 22 6 3.4162 -2.5156 -4.7334 23 6 2.9626 -1.9343 -3.5676 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7093 1.1617 3.4843 28 1 2.7273 1.2760 -4.6463 29 1 3.5462 0.2194 -6.7107 30 1 3.6083 -3.5779 -4.7665 31 1 2.7993 -2.5402 -2.6886 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113693868.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:17:29 Heat of formation + Delta-G solvation = -82.228403 kcal Electronic energy + Delta-G solvation = -18980.140638 eV Core-core repulsion = 15615.516557 eV Total energy + Delta-G solvation = -3364.624081 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.34726 -41.69181 -40.06718 -37.75876 -37.70391 -35.40038 -33.51136 -32.62322 -31.63371 -28.34080 -27.47583 -25.09363 -24.24853 -23.24596 -21.74242 -20.51796 -19.83697 -19.38174 -18.69040 -18.60357 -17.79716 -16.98807 -16.68527 -16.19316 -16.05626 -15.21748 -14.98128 -14.54285 -14.46936 -14.13385 -13.86807 -13.24975 -13.05930 -12.84669 -12.81528 -12.62666 -12.42270 -12.39972 -12.33503 -12.16660 -11.73441 -11.65353 -11.03630 -10.88219 -10.62805 -10.56166 -8.31346 -6.48047 -1.59257 -0.18431 -0.11871 0.20469 1.25076 1.42311 1.42995 1.55354 1.70661 2.24607 2.37611 3.00525 3.21277 3.35020 3.44537 3.63933 3.76718 4.19654 4.41595 4.52778 4.54670 4.59315 4.74870 4.78434 4.90554 4.99279 5.08351 5.27155 5.45033 5.57703 5.82915 5.98492 6.41304 6.53004 6.75843 7.23350 8.76532 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.038063 B = 0.003865 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.455338 B = 7242.831058 C = 7741.821695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.218 3.782 3 H 0.013 0.987 4 C -0.547 4.547 5 H 0.072 0.928 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.982 3.018 9 H -0.261 1.261 10 H -0.278 1.278 11 H -0.273 1.273 12 O -0.349 6.349 13 C 0.489 3.511 14 O -0.533 6.533 15 C -0.074 4.074 16 C -0.054 4.054 17 C -0.052 4.052 18 C -0.029 4.029 19 N 0.027 4.973 20 O -0.165 6.165 21 O -0.166 6.166 22 C -0.054 4.054 23 C -0.055 4.055 24 H 0.025 0.975 25 H 0.048 0.952 26 H 0.082 0.918 27 H 0.271 0.729 28 H 0.169 0.831 29 H 0.185 0.815 30 H 0.183 0.817 31 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.011 -5.410 -13.685 15.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.165 3.835 3 H 0.031 0.969 4 C -0.585 4.585 5 H 0.090 0.910 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.805 3.195 9 H -0.185 1.185 10 H -0.203 1.203 11 H -0.198 1.198 12 O -0.265 6.265 13 C 0.334 3.666 14 O -0.425 6.425 15 C -0.076 4.076 16 C -0.073 4.073 17 C -0.071 4.071 18 C -0.111 4.111 19 N 0.545 4.455 20 O -0.380 6.380 21 O -0.381 6.381 22 C -0.073 4.073 23 C -0.074 4.074 24 H 0.044 0.956 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.186 0.814 29 H 0.202 0.798 30 H 0.200 0.800 31 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.601 -4.654 -12.892 14.172 hybrid contribution 0.116 0.030 0.645 0.656 sum 3.718 -4.624 -12.247 13.608 Atomic orbital electron populations 1.22017 0.96532 1.00693 1.01023 1.20465 0.92137 0.92299 0.78579 0.96936 1.21320 1.33459 1.14048 0.89661 0.90994 1.25794 0.94678 0.95619 1.02108 1.70008 1.36553 1.23615 1.25252 0.85148 0.78315 0.78466 0.77580 1.18533 1.20349 1.19847 1.86513 1.75837 1.43042 1.21068 1.21585 0.74651 0.85148 0.85199 1.90792 1.49340 1.17337 1.85061 1.19755 1.00955 0.95434 0.91443 1.21418 0.94699 1.02028 0.89143 1.21152 0.94275 0.91563 1.00121 1.21557 1.09233 0.94867 0.85459 1.43805 0.98031 1.00912 1.02715 1.94541 1.55676 1.62784 1.25038 1.94549 1.54646 0.98085 1.90864 1.21230 0.94271 1.02814 0.88978 1.21688 0.93909 0.93020 0.98780 0.95568 0.93255 0.89993 0.91959 0.81390 0.79783 0.79964 0.81051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.02 9.33 71.98 0.67 -6.35 16 2 C 0.22 11.21 2.56 29.85 0.08 11.29 16 3 H 0.01 0.74 7.16 -2.38 -0.02 0.72 16 4 C -0.55 -29.25 8.90 25.60 0.23 -29.02 16 5 H 0.07 3.73 7.81 -2.91 -0.02 3.70 16 6 C 0.02 0.95 5.30 84.66 0.45 1.39 16 7 N -0.92 -50.54 11.32 21.45 0.24 -50.29 16 8 Si 0.98 40.93 29.54 68.60 2.03 42.95 16 9 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 10 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 11 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 12 O -0.35 -15.11 9.12 -56.14 -0.51 -15.62 16 13 C 0.49 18.53 7.87 70.33 0.55 19.09 16 14 O -0.53 -23.28 15.61 19.93 0.31 -22.97 16 15 C -0.07 -1.97 5.87 -20.10 -0.12 -2.09 16 16 C -0.05 -1.13 9.60 22.54 0.22 -0.92 16 17 C -0.05 -0.91 9.54 22.23 0.21 -0.70 16 18 C -0.03 -0.56 6.86 36.44 0.25 -0.31 16 19 N 0.03 0.61 4.45 -46.31 -0.21 0.41 16 20 O -0.16 -3.91 18.43 18.88 0.35 -3.56 16 21 O -0.17 -4.00 18.43 18.89 0.35 -3.65 16 22 C -0.05 -0.96 9.54 22.23 0.21 -0.75 16 23 C -0.06 -1.18 9.62 22.54 0.22 -0.96 16 24 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.08 4.31 6.07 -2.39 -0.01 4.30 16 27 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 28 H 0.17 3.29 7.65 -2.91 -0.02 3.27 16 29 H 0.18 2.30 7.60 -2.91 -0.02 2.28 16 30 H 0.18 2.44 7.60 -2.91 -0.02 2.41 16 31 H 0.17 3.49 7.61 -2.91 -0.02 3.46 16 Total: -1.00 -62.79 289.30 6.69 -56.10 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 1.17 Total: 5.95 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 2.97 Total: -9.32 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: 0.04 Total: -49.89 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: 0.50 Total: -45.80 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.95 kcal Total: -62.79 6.69 -56.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113693868.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.131 kcal (2) G-P(sol) polarization free energy of solvation -62.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds