Wall clock time and date at job start Mon Mar 30 2020 00:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34755 * 116.99606 * 2 1 4 4 O 1.21500 * 120.00521 * 359.97438 * 3 2 1 5 5 C 1.47415 * 119.99647 * 180.02562 * 3 2 1 6 6 C 1.39863 * 120.16023 * 0.02562 * 5 3 2 7 7 C 1.37869 * 120.07291 * 179.97438 * 6 5 3 8 8 C 1.38396 * 120.40106 * 359.97438 * 7 6 5 9 9 C 1.38797 * 120.32019 * 359.71946 * 8 7 6 10 10 N 1.39594 * 120.04433 * 180.28006 * 9 8 7 11 11 C 1.34773 * 119.99579 * 325.24350 * 10 9 8 12 12 O 1.21773 * 120.00401 * 4.50478 * 11 10 9 13 13 C 1.41821 * 119.99551 * 184.50913 * 11 10 9 14 14 H 1.07999 * 120.00436 * 359.97438 * 13 11 10 15 15 C 1.40136 * 119.99847 * 179.97438 * 13 11 10 16 16 N 1.30634 * 120.00198 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 120.00044 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47179 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47176 * 120.00200 * 17 15 13 20 20 H 1.48502 * 109.46927 * 239.99790 * 17 15 13 21 21 C 1.39600 * 119.91715 * 0.55681 * 9 8 7 22 22 O 1.35654 * 120.19727 * 179.72154 * 21 9 8 23 23 H 1.08997 * 109.47368 * 300.00205 * 1 2 3 24 24 H 1.08999 * 109.47293 * 60.00296 * 1 2 3 25 25 H 1.09000 * 109.46872 * 180.02562 * 1 2 3 26 26 H 1.08005 * 119.96198 * 359.94991 * 6 5 3 27 27 H 1.08004 * 119.79607 * 180.02562 * 7 6 5 28 28 H 1.08008 * 119.84008 * 179.97438 * 8 7 6 29 29 H 0.96998 * 119.99935 * 145.24670 * 10 9 8 30 30 H 0.96997 * 120.00535 * 180.02562 * 16 15 13 31 31 H 0.96700 * 113.99606 * 269.72820 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2197 -0.0005 5 6 3.5358 1.2779 -0.0006 6 6 4.3008 0.1070 -0.0017 7 6 5.6775 0.1813 -0.0027 8 6 6.3126 1.4110 -0.0033 9 6 5.5695 2.5833 -0.0086 10 7 6.2160 3.8205 -0.0150 11 6 7.3784 3.9768 0.6490 12 8 7.9066 3.0197 1.1856 13 6 7.9863 5.2559 0.7228 14 1 7.5181 6.1047 0.2466 15 6 9.1946 5.4186 1.4137 16 7 9.7613 4.3920 1.9893 17 14 9.9950 7.1036 1.5115 18 1 9.1599 8.0914 0.7823 19 1 10.1169 7.5119 2.9341 20 1 11.3451 7.0468 0.8956 21 6 4.1748 2.5237 -0.0017 22 8 3.4431 3.6659 -0.0012 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.8125 -0.8564 -0.0013 27 1 6.2639 -0.7257 -0.0040 28 1 7.3916 1.4586 -0.0037 29 1 5.8287 4.5676 -0.4973 30 1 10.5975 4.5046 2.4678 31 1 3.2317 3.9971 0.8824 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170535019.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:33 Heat of formation + Delta-G solvation = -158.866414 kcal Electronic energy + Delta-G solvation = -19477.082934 eV Core-core repulsion = 16109.135579 eV Total energy + Delta-G solvation = -3367.947355 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.81263 -40.77669 -39.15118 -37.67968 -37.20791 -35.40204 -34.46524 -31.93006 -30.42386 -28.67199 -28.20923 -25.18123 -23.67758 -22.58570 -21.45232 -19.73406 -19.17934 -18.87399 -18.00177 -17.63048 -17.33358 -16.82867 -16.50967 -16.31168 -15.76646 -15.36177 -14.84036 -14.58559 -14.47456 -14.28541 -13.30624 -13.24174 -13.21923 -13.13068 -12.81723 -12.72188 -12.69927 -12.04672 -11.98906 -11.77101 -11.44655 -11.12995 -10.85984 -10.01399 -9.72966 -8.85757 -8.40983 -7.04352 -0.35827 0.29172 1.37380 1.40127 1.52349 1.57647 1.65380 2.20254 2.33571 2.68011 2.87962 3.19660 3.59017 3.71430 4.04377 4.22393 4.35476 4.36924 4.43257 4.58655 4.67725 4.79068 5.12600 5.20066 5.25642 5.33640 5.45015 5.69936 5.85696 6.08989 6.21674 6.69833 6.71608 6.72367 7.31602 8.33488 8.52627 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.041622 B = 0.004504 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.555460 B = 6214.560296 C = 6748.013730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.516 3.484 4 O -0.521 6.521 5 C -0.152 4.152 6 C -0.069 4.069 7 C -0.113 4.113 8 C -0.102 4.102 9 C 0.125 3.875 10 N -0.690 5.690 11 C 0.531 3.469 12 O -0.609 6.609 13 C -0.564 4.564 14 H 0.087 0.913 15 C 0.035 3.965 16 N -0.797 5.797 17 Si 1.000 3.000 18 H -0.249 1.249 19 H -0.266 1.266 20 H -0.266 1.266 21 C 0.114 3.886 22 O -0.483 6.483 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.138 0.862 26 H 0.171 0.829 27 H 0.162 0.838 28 H 0.121 0.879 29 H 0.405 0.595 30 H 0.280 0.720 31 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.543 -6.972 -3.166 14.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.271 6.271 3 C 0.362 3.638 4 O -0.411 6.411 5 C -0.155 4.155 6 C -0.088 4.088 7 C -0.131 4.131 8 C -0.123 4.123 9 C 0.027 3.973 10 N -0.334 5.334 11 C 0.341 3.659 12 O -0.496 6.496 13 C -0.599 4.599 14 H 0.105 0.895 15 C -0.184 4.184 16 N -0.425 5.425 17 Si 0.819 3.181 18 H -0.172 1.172 19 H -0.191 1.191 20 H -0.190 1.190 21 C 0.065 3.935 22 O -0.294 6.294 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.156 0.844 26 H 0.188 0.812 27 H 0.180 0.820 28 H 0.138 0.862 29 H 0.240 0.760 30 H 0.091 0.909 31 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -12.196 -7.398 -3.266 14.634 hybrid contribution 0.139 1.335 0.437 1.412 sum -12.058 -6.063 -2.829 13.789 Atomic orbital electron populations 1.23592 0.74252 1.05961 1.02525 1.86536 1.25212 1.31225 1.84093 1.20931 0.88609 0.81775 0.72531 1.90827 1.67047 1.36724 1.46524 1.19337 0.89777 0.94042 1.12317 1.21520 0.93125 0.97728 0.96437 1.21321 0.94637 0.97389 0.99790 1.21672 1.01103 0.91880 0.97673 1.18409 0.90297 0.88137 1.00486 1.43645 1.25076 1.10285 1.54437 1.17404 0.79254 0.90737 0.78520 1.90584 1.64265 1.42966 1.51772 1.20596 1.08265 0.94909 1.36113 0.89476 1.26959 0.96606 1.02828 0.91982 1.70136 1.15331 1.33626 1.23394 0.84928 0.78189 0.75913 0.79065 1.17245 1.19116 1.19030 1.18256 0.87414 0.85875 1.02002 1.84661 1.72088 1.38412 1.34286 0.91974 0.92045 0.84418 0.81151 0.82035 0.86160 0.75958 0.90939 0.74234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.57 113.37 1.20 1.68 16 2 O -0.35 -8.38 9.81 -56.65 -0.56 -8.93 16 3 C 0.52 15.69 7.89 70.24 0.55 16.24 16 4 O -0.52 -18.15 14.95 26.84 0.40 -17.75 16 5 C -0.15 -4.92 5.88 -20.04 -0.12 -5.04 16 6 C -0.07 -1.88 9.61 22.58 0.22 -1.67 16 7 C -0.11 -3.44 10.01 22.22 0.22 -3.22 16 8 C -0.10 -4.18 8.68 22.44 0.19 -3.99 16 9 C 0.13 5.31 6.32 38.37 0.24 5.55 16 10 N -0.69 -32.04 5.16 -311.08 -1.61 -33.64 16 11 C 0.53 29.81 7.41 85.13 0.63 30.45 16 12 O -0.61 -38.16 12.28 -4.58 -0.06 -38.21 16 13 C -0.56 -30.79 9.32 23.62 0.22 -30.57 16 14 H 0.09 4.31 7.85 -2.91 -0.02 4.29 16 15 C 0.03 1.85 5.50 85.33 0.47 2.32 16 16 N -0.80 -46.00 11.73 21.85 0.26 -45.75 16 17 Si 1.00 38.96 29.56 68.60 2.03 40.99 16 18 H -0.25 -9.12 7.11 99.48 0.71 -8.42 16 19 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 20 H -0.27 -9.92 7.11 99.48 0.71 -9.22 16 21 C 0.11 4.22 6.74 23.03 0.16 4.38 16 22 O -0.48 -17.12 11.14 -68.74 -0.77 -17.88 16 23 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.17 3.37 7.60 -2.91 -0.02 3.34 16 27 H 0.16 3.78 8.06 -2.91 -0.02 3.76 16 28 H 0.12 5.79 6.17 -2.91 -0.02 5.78 16 29 H 0.41 16.96 8.53 -92.71 -0.79 16.17 16 30 H 0.28 14.51 8.29 -92.71 -0.77 13.74 16 31 H 0.40 11.80 9.06 -74.06 -0.67 11.12 16 Total: -1.00 -74.04 283.86 3.43 -70.60 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: -0.25 Total: 34.42 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: 3.99 Total: 16.15 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -1.35 Total: -79.39 kcal Atomic # 8 Polarization: -81.80 SS G_CDS: -0.98 Total: -82.77 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -74.04 3.43 -70.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170535019.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.262 kcal (2) G-P(sol) polarization free energy of solvation -74.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds