Wall clock time and date at job start Mon Mar 30 2020 00:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36720 * 120.00238 * 2 1 4 4 H 1.08001 * 120.00144 * 204.94178 * 3 2 1 5 5 C 1.39121 * 120.00014 * 24.93006 * 3 2 1 6 6 N 1.31325 * 119.99774 * 7.48468 * 5 3 2 7 7 Si 1.86797 * 119.99994 * 187.48126 * 5 3 2 8 8 H 1.48504 * 109.47076 * 90.00226 * 7 5 3 9 9 H 1.48498 * 109.47051 * 210.00192 * 7 5 3 10 10 H 1.48504 * 109.47093 * 330.00218 * 7 5 3 11 11 C 1.34777 * 119.99800 * 180.26779 * 2 1 3 12 12 O 1.21768 * 119.99897 * 179.72462 * 11 2 1 13 13 C 1.46190 * 120.00422 * 359.72659 * 11 2 1 14 14 C 1.35017 * 120.00337 * 173.90416 * 13 11 2 15 15 C 1.47102 * 119.99787 * 346.91491 * 14 13 11 16 16 C 1.39903 * 120.15827 * 316.36974 * 15 14 13 17 17 C 1.37823 * 119.83510 * 179.74333 * 16 15 14 18 18 C 1.38562 * 120.15744 * 0.53649 * 17 16 15 19 19 Cl 1.73603 * 119.83548 * 179.73956 * 18 17 16 20 20 C 1.38554 * 120.32707 * 359.71728 * 18 17 16 21 21 C 1.37830 * 120.15905 * 0.02562 * 20 18 17 22 22 H 1.09004 * 109.47229 * 272.81667 * 1 2 3 23 23 H 1.09003 * 109.47230 * 32.81856 * 1 2 3 24 24 H 1.09004 * 109.47634 * 152.81863 * 1 2 3 25 25 H 0.97002 * 119.99594 * 180.02562 * 6 5 3 26 26 H 1.08000 * 119.99705 * 353.90920 * 13 11 2 27 27 H 1.07992 * 119.99781 * 166.91189 * 14 13 11 28 28 H 1.08000 * 120.08237 * 359.97438 * 16 15 14 29 29 H 1.08002 * 119.92471 * 180.22965 * 17 16 15 30 30 H 1.07997 * 119.92322 * 179.97438 * 20 18 17 31 31 H 1.08001 * 120.08087 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1486 1.1840 0.0000 4 1 3.1531 1.2276 -0.3944 5 6 1.5503 2.3327 0.5078 6 7 0.3909 2.2536 1.1195 7 14 2.3961 3.9876 0.3197 8 1 1.9629 4.6233 -0.9505 9 1 2.0297 4.8633 1.4617 10 1 3.8680 3.7916 0.2985 11 6 2.1388 -1.1672 -0.0055 12 8 3.3565 -1.1672 -0.0105 13 6 1.4079 -2.4333 -0.0053 14 6 2.0767 -3.5990 -0.1349 15 6 3.4847 -3.5956 -0.5611 16 6 3.8991 -2.7698 -1.6115 17 6 5.2209 -2.7681 -2.0019 18 6 6.1362 -3.5898 -1.3639 19 17 7.7978 -3.5858 -1.8668 20 6 5.7320 -4.4142 -0.3263 21 6 4.4144 -4.4226 0.0784 22 1 -0.3634 0.0505 1.0265 23 1 -0.3634 0.8637 -0.5570 24 1 -0.3634 -0.9142 -0.4694 25 1 -0.0265 3.0546 1.4733 26 1 0.3329 -2.4362 0.0983 27 1 1.5780 -4.5337 0.0743 28 1 3.1858 -2.1325 -2.1129 29 1 5.5432 -2.1284 -2.8102 30 1 6.4508 -5.0523 0.1661 31 1 4.1008 -5.0654 0.8876 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000207791546.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:20:32 Heat of formation + Delta-G solvation = 19.499866 kcal Electronic energy + Delta-G solvation = -17290.948359 eV Core-core repulsion = 14371.444711 eV Total energy + Delta-G solvation = -2919.503648 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.24657 -38.06726 -36.19903 -34.85226 -32.94443 -31.74181 -30.63191 -28.96602 -26.47317 -24.86258 -23.05523 -22.23408 -20.83446 -18.10473 -17.11527 -16.75271 -16.25775 -15.07640 -14.88932 -14.51011 -14.01376 -13.83730 -13.30031 -13.11907 -13.03996 -12.79472 -12.14746 -11.82764 -11.50003 -11.34842 -11.20808 -11.10715 -11.03235 -10.78453 -10.47557 -10.41377 -10.37514 -9.24886 -9.12205 -8.66160 -8.35930 -7.74517 -7.42217 -6.44657 -3.95470 1.16155 1.84290 2.30924 2.45878 3.13050 3.18905 3.25092 4.04614 4.18723 4.35558 4.89266 5.11136 5.16637 5.23143 5.27452 5.62880 5.72448 5.87147 5.92663 6.14122 6.29901 6.36138 6.47596 6.65644 6.71524 6.79234 6.89443 7.10015 7.16406 7.27764 7.42845 8.06199 8.40577 9.10887 9.31735 9.95801 10.56892 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.023104 B = 0.005416 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.634224 B = 5168.590794 C = 6149.030206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.427 5.427 3 C -0.296 4.296 4 H 0.102 0.898 5 C 0.030 3.970 6 N -0.874 5.874 7 Si 0.929 3.071 8 H -0.276 1.276 9 H -0.282 1.282 10 H -0.267 1.267 11 C 0.449 3.551 12 O -0.580 6.580 13 C -0.162 4.162 14 C -0.096 4.096 15 C -0.031 4.031 16 C -0.018 4.018 17 C -0.122 4.122 18 C -0.033 4.033 19 Cl -0.093 7.093 20 C -0.128 4.128 21 C -0.103 4.103 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.030 0.970 25 H 0.270 0.730 26 H 0.122 0.878 27 H 0.124 0.876 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.321 -10.368 -3.978 11.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.143 5.143 3 C -0.425 4.425 4 H 0.119 0.881 5 C -0.174 4.174 6 N -0.512 5.512 7 Si 0.756 3.244 8 H -0.202 1.202 9 H -0.207 1.207 10 H -0.191 1.191 11 C 0.241 3.759 12 O -0.467 6.467 13 C -0.183 4.183 14 C -0.117 4.117 15 C -0.031 4.031 16 C -0.037 4.037 17 C -0.141 4.141 18 C -0.059 4.059 19 Cl -0.065 7.065 20 C -0.147 4.147 21 C -0.121 4.121 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.049 0.951 25 H 0.081 0.919 26 H 0.140 0.860 27 H 0.142 0.858 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.879 -10.133 -3.920 11.240 hybrid contribution 0.170 1.070 0.200 1.102 sum 3.048 -9.063 -3.719 10.260 Atomic orbital electron populations 1.21622 0.81161 0.98828 1.02071 1.43653 1.05700 1.05137 1.59795 1.19743 1.00899 0.84327 1.37494 0.88069 1.25484 0.96355 1.00454 0.95143 1.69943 1.16383 1.30018 1.34899 0.85862 0.79921 0.80761 0.77885 1.20190 1.20744 1.19147 1.18094 0.87887 0.83751 0.86215 1.90715 1.12985 1.86385 1.56589 1.23395 0.99605 0.93854 1.01464 1.21993 0.92852 0.97199 0.99644 1.18899 0.93484 0.95487 0.95213 1.21038 0.94869 0.93263 0.94516 1.20767 0.92829 0.99325 1.01214 1.20874 0.84389 1.01411 0.99265 1.98322 1.19226 1.98033 1.90876 1.20683 0.96412 1.00322 0.97238 1.21056 0.92218 0.99383 0.99438 0.92082 0.91275 0.95101 0.91934 0.85974 0.85779 0.85973 0.85796 0.85889 0.85832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.30 8.42 59.84 0.50 2.81 16 2 N -0.43 -10.66 3.01 -123.87 -0.37 -11.04 16 3 C -0.30 -8.03 9.24 -15.04 -0.14 -8.17 16 4 H 0.10 2.87 7.43 -52.49 -0.39 2.49 16 5 C 0.03 0.77 5.19 -17.44 -0.09 0.68 16 6 N -0.87 -22.63 10.54 55.50 0.59 -22.04 16 7 Si 0.93 20.35 29.56 -169.99 -5.02 15.33 16 8 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 11 C 0.45 10.63 6.62 -13.07 -0.09 10.54 16 12 O -0.58 -15.20 12.05 5.13 0.06 -15.14 16 13 C -0.16 -2.98 9.02 -37.54 -0.34 -3.32 16 14 C -0.10 -1.55 9.81 -37.13 -0.36 -1.91 16 15 C -0.03 -0.54 4.49 -105.06 -0.47 -1.01 16 16 C -0.02 -0.34 6.69 -39.11 -0.26 -0.60 16 17 C -0.12 -2.13 9.81 -39.61 -0.39 -2.52 16 18 C -0.03 -0.54 6.33 -39.35 -0.25 -0.79 16 19 Cl -0.09 -1.35 28.95 -51.86 -1.50 -2.85 16 20 C -0.13 -1.96 9.81 -39.61 -0.39 -2.35 16 21 C -0.10 -1.61 9.80 -39.11 -0.38 -1.99 16 22 H 0.06 1.38 7.46 -51.93 -0.39 0.99 16 23 H 0.07 1.56 7.16 -51.93 -0.37 1.19 16 24 H 0.03 0.54 6.02 -51.93 -0.31 0.23 16 25 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 26 H 0.12 1.92 6.26 -52.49 -0.33 1.60 16 27 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.12 2.35 7.13 -52.49 -0.37 1.98 16 29 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 30 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 282.61 15.07 4.26 4.26 Total: -1.00 -29.44 282.61 -7.64 -37.08 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -2.99 Total: 3.03 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -2.66 Total: -8.62 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.21 Total: -33.08 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.06 Total: -15.14 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -1.50 Total: -2.85 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.44 -7.64 -37.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000207791546.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.578 kcal (2) G-P(sol) polarization free energy of solvation -29.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds