Wall clock time and date at job start Mon Mar 30 2020 00:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36720 * 120.00238 * 2 1 4 4 H 1.08001 * 120.00144 * 204.94178 * 3 2 1 5 5 C 1.39121 * 120.00014 * 24.93006 * 3 2 1 6 6 N 1.31325 * 119.99774 * 7.48468 * 5 3 2 7 7 Si 1.86797 * 119.99994 * 187.48126 * 5 3 2 8 8 H 1.48504 * 109.47076 * 90.00226 * 7 5 3 9 9 H 1.48498 * 109.47051 * 210.00192 * 7 5 3 10 10 H 1.48504 * 109.47093 * 330.00218 * 7 5 3 11 11 C 1.34777 * 119.99800 * 180.26779 * 2 1 3 12 12 O 1.21768 * 119.99897 * 179.72462 * 11 2 1 13 13 C 1.46190 * 120.00422 * 359.72659 * 11 2 1 14 14 C 1.35017 * 120.00337 * 173.90416 * 13 11 2 15 15 C 1.47102 * 119.99787 * 346.91491 * 14 13 11 16 16 C 1.39903 * 120.15827 * 316.36974 * 15 14 13 17 17 C 1.37823 * 119.83510 * 179.74333 * 16 15 14 18 18 C 1.38562 * 120.15744 * 0.53649 * 17 16 15 19 19 Cl 1.73603 * 119.83548 * 179.73956 * 18 17 16 20 20 C 1.38554 * 120.32707 * 359.71728 * 18 17 16 21 21 C 1.37830 * 120.15905 * 0.02562 * 20 18 17 22 22 H 1.09004 * 109.47229 * 272.81667 * 1 2 3 23 23 H 1.09003 * 109.47230 * 32.81856 * 1 2 3 24 24 H 1.09004 * 109.47634 * 152.81863 * 1 2 3 25 25 H 0.97002 * 119.99594 * 180.02562 * 6 5 3 26 26 H 1.08000 * 119.99705 * 353.90920 * 13 11 2 27 27 H 1.07992 * 119.99781 * 166.91189 * 14 13 11 28 28 H 1.08000 * 120.08237 * 359.97438 * 16 15 14 29 29 H 1.08002 * 119.92471 * 180.22965 * 17 16 15 30 30 H 1.07997 * 119.92322 * 179.97438 * 20 18 17 31 31 H 1.08001 * 120.08087 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1486 1.1840 0.0000 4 1 3.1531 1.2276 -0.3944 5 6 1.5503 2.3327 0.5078 6 7 0.3909 2.2536 1.1195 7 14 2.3961 3.9876 0.3197 8 1 1.9629 4.6233 -0.9505 9 1 2.0297 4.8633 1.4617 10 1 3.8680 3.7916 0.2985 11 6 2.1388 -1.1672 -0.0055 12 8 3.3565 -1.1672 -0.0105 13 6 1.4079 -2.4333 -0.0053 14 6 2.0767 -3.5990 -0.1349 15 6 3.4847 -3.5956 -0.5611 16 6 3.8991 -2.7698 -1.6115 17 6 5.2209 -2.7681 -2.0019 18 6 6.1362 -3.5898 -1.3639 19 17 7.7978 -3.5858 -1.8668 20 6 5.7320 -4.4142 -0.3263 21 6 4.4144 -4.4226 0.0784 22 1 -0.3634 0.0505 1.0265 23 1 -0.3634 0.8637 -0.5570 24 1 -0.3634 -0.9142 -0.4694 25 1 -0.0265 3.0546 1.4733 26 1 0.3329 -2.4362 0.0983 27 1 1.5780 -4.5337 0.0743 28 1 3.1858 -2.1325 -2.1129 29 1 5.5432 -2.1284 -2.8102 30 1 6.4508 -5.0523 0.1661 31 1 4.1008 -5.0654 0.8876 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000207791546.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:20:31 Heat of formation + Delta-G solvation = 3.454377 kcal Electronic energy + Delta-G solvation = -17291.644144 eV Core-core repulsion = 14371.444711 eV Total energy + Delta-G solvation = -2920.199433 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.78829 -39.60692 -37.47127 -36.63576 -34.42160 -33.62657 -31.92771 -30.36761 -28.26743 -26.61542 -24.55772 -23.54414 -22.34351 -19.66364 -18.90387 -18.37235 -17.72869 -16.73125 -16.34555 -16.05236 -15.71210 -15.50479 -14.73071 -14.52535 -14.39506 -14.11442 -13.76036 -13.59114 -13.19948 -13.01411 -12.70048 -12.59069 -12.44617 -12.39203 -12.15398 -12.04388 -11.71762 -11.03426 -10.59138 -10.29303 -9.86814 -9.54098 -8.88137 -8.34967 -5.97336 -0.18955 0.53796 0.94244 1.20089 1.38477 1.39838 1.50533 2.25415 2.55978 2.87772 3.18160 3.23535 3.90387 3.93219 4.03043 4.18927 4.45675 4.47778 4.63034 4.73384 4.88278 5.03415 5.08286 5.16499 5.32442 5.37013 5.40671 5.42127 5.53082 5.77007 5.97787 6.13537 6.52097 7.18950 7.49406 8.11310 8.65088 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.023104 B = 0.005416 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.634224 B = 5168.590794 C = 6149.030206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.454 5.454 3 C -0.334 4.334 4 H 0.071 0.929 5 C -0.003 4.003 6 N -0.893 5.893 7 Si 0.987 3.013 8 H -0.265 1.265 9 H -0.272 1.272 10 H -0.278 1.278 11 C 0.449 3.551 12 O -0.614 6.614 13 C -0.193 4.193 14 C -0.052 4.052 15 C -0.060 4.060 16 C -0.037 4.037 17 C -0.140 4.140 18 C -0.040 4.040 19 Cl -0.078 7.078 20 C -0.128 4.128 21 C -0.097 4.097 22 H 0.047 0.953 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.274 0.726 26 H 0.153 0.847 27 H 0.178 0.822 28 H 0.101 0.899 29 H 0.125 0.875 30 H 0.152 0.848 31 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.291 -12.526 -3.416 13.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.171 5.171 3 C -0.463 4.463 4 H 0.089 0.911 5 C -0.205 4.205 6 N -0.532 5.532 7 Si 0.811 3.189 8 H -0.190 1.190 9 H -0.197 1.197 10 H -0.203 1.203 11 C 0.242 3.758 12 O -0.502 6.502 13 C -0.214 4.214 14 C -0.072 4.072 15 C -0.061 4.061 16 C -0.056 4.056 17 C -0.159 4.159 18 C -0.067 4.067 19 Cl -0.049 7.049 20 C -0.146 4.146 21 C -0.115 4.115 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.170 0.830 27 H 0.195 0.805 28 H 0.119 0.881 29 H 0.143 0.857 30 H 0.170 0.830 31 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.832 -12.312 -3.366 13.074 hybrid contribution 0.369 1.485 -0.036 1.530 sum 3.200 -10.827 -3.402 11.792 Atomic orbital electron populations 1.21513 0.79527 1.00043 1.01259 1.43826 1.06808 1.04946 1.61484 1.19579 1.00508 0.86409 1.39768 0.91102 1.26124 0.96975 1.02864 0.94547 1.70013 1.17012 1.30782 1.35363 0.85022 0.78146 0.77267 0.78479 1.18978 1.19710 1.20338 1.19002 0.87878 0.85183 0.83743 1.90684 1.14828 1.87404 1.57329 1.23295 1.00935 0.91724 1.05432 1.22590 0.91813 0.98442 0.94346 1.19260 0.95036 0.96170 0.95588 1.21008 0.95072 0.93777 0.95741 1.20893 0.92996 1.00083 1.01891 1.21056 0.85057 1.01171 0.99386 1.98325 1.17823 1.97968 1.90795 1.21095 0.97118 0.99902 0.96498 1.21468 0.91874 0.98641 0.99482 0.93488 0.93145 0.90995 0.91630 0.82995 0.80529 0.88053 0.85678 0.82993 0.82301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.19 8.42 127.77 1.08 6.27 16 2 N -0.45 -23.27 3.01 -664.01 -2.00 -25.27 16 3 C -0.33 -18.95 9.24 84.14 0.78 -18.17 16 4 H 0.07 4.31 7.43 -2.91 -0.02 4.29 16 5 C 0.00 -0.15 5.19 84.98 0.44 0.29 16 6 N -0.89 -47.12 10.54 21.69 0.23 -46.89 16 7 Si 0.99 42.78 29.56 68.60 2.03 44.81 16 8 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 9 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 C 0.45 21.50 6.62 86.31 0.57 22.07 16 12 O -0.61 -33.04 12.05 -4.56 -0.05 -33.09 16 13 C -0.19 -6.70 9.02 23.59 0.21 -6.49 16 14 C -0.05 -1.48 9.81 23.86 0.23 -1.25 16 15 C -0.06 -1.99 4.49 -20.15 -0.09 -2.08 16 16 C -0.04 -1.39 6.69 22.57 0.15 -1.24 16 17 C -0.14 -4.90 9.81 22.25 0.22 -4.68 16 18 C -0.04 -1.26 6.33 22.42 0.14 -1.12 16 19 Cl -0.08 -2.14 28.95 -2.72 -0.08 -2.22 16 20 C -0.13 -3.55 9.81 22.25 0.22 -3.33 16 21 C -0.10 -2.69 9.80 22.58 0.22 -2.47 16 22 H 0.05 2.13 7.46 -2.38 -0.02 2.11 16 23 H 0.05 2.33 7.16 -2.39 -0.02 2.31 16 24 H 0.07 2.44 6.02 -2.39 -0.01 2.43 16 25 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 26 H 0.15 4.29 6.26 -2.91 -0.02 4.27 16 27 H 0.18 3.23 8.06 -2.91 -0.02 3.21 16 28 H 0.10 4.09 7.13 -2.91 -0.02 4.07 16 29 H 0.13 4.16 8.06 -2.91 -0.02 4.13 16 30 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 31 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -66.66 282.61 5.45 -61.21 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 1.15 Total: 13.66 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 4.17 Total: -12.20 kcal Atomic # 7 Polarization: -70.39 SS G_CDS: -1.77 Total: -72.16 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -0.05 Total: -33.09 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 17 Polarization: -2.14 SS G_CDS: -0.08 Total: -2.22 kcal Total: -66.66 5.45 -61.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000207791546.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.666 kcal (2) G-P(sol) polarization free energy of solvation -66.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds