Wall clock time and date at job start Mon Mar 30 2020 00:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42895 * 113.99830 * 2 1 4 4 H 1.09002 * 110.89084 * 26.11650 * 3 2 1 5 5 C 1.55129 * 111.22522 * 262.20423 * 3 2 1 6 6 N 1.47422 * 104.72486 * 279.18261 * 5 3 2 7 7 S 1.65600 * 125.65024 * 155.81791 * 6 5 3 8 8 O 1.42103 * 106.39991 * 156.15029 * 7 6 5 9 9 O 1.42095 * 106.40377 * 23.22813 * 7 6 5 10 10 C 1.76199 * 107.21522 * 269.68634 * 7 6 5 11 11 H 1.08002 * 120.00405 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99836 * 179.72073 * 10 7 6 13 13 N 1.31514 * 119.99698 * 0.28505 * 12 10 7 14 14 Si 1.86794 * 119.99837 * 180.27572 * 12 10 7 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 C 1.47024 * 108.69828 * 335.54998 * 6 5 3 19 19 C 1.54320 * 107.27404 * 1.28918 * 18 6 5 20 20 H 1.09000 * 110.71862 * 263.83198 * 19 18 6 21 21 O 1.42896 * 110.72026 * 140.73768 * 19 18 6 22 22 C 1.42896 * 114.00433 * 91.45171 * 21 19 18 23 23 H 1.08993 * 109.47124 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46700 * 300.00063 * 1 2 3 25 25 H 1.09000 * 109.47211 * 59.99789 * 1 2 3 26 26 H 1.08997 * 110.49890 * 160.33395 * 5 3 2 27 27 H 1.09012 * 110.34108 * 37.94410 * 5 3 2 28 28 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 29 29 H 1.09000 * 109.88119 * 120.70967 * 18 6 5 30 30 H 1.09008 * 109.87935 * 241.86832 * 18 6 5 31 31 H 1.08998 * 109.47281 * 299.99978 * 22 21 19 32 32 H 1.08996 * 109.47031 * 59.99997 * 22 21 19 33 33 H 1.09003 * 109.47177 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3330 2.0324 0.4483 5 6 2.4179 1.7387 -1.4327 6 7 3.7142 1.0779 -1.6695 7 16 4.3513 0.7056 -3.1520 8 8 5.7586 0.6208 -2.9741 9 8 3.7373 1.5843 -4.0847 10 6 3.8029 -0.9178 -3.5624 11 1 3.1677 -1.4621 -2.8793 12 6 4.1797 -1.4910 -4.7585 13 7 4.9530 -0.8280 -5.5905 14 14 3.5921 -3.2090 -5.1970 15 1 2.3044 -3.1194 -5.9311 16 1 4.6054 -3.8748 -6.0545 17 1 3.3995 -3.9986 -3.9542 18 6 4.3507 0.8100 -0.3715 19 6 3.3824 1.3033 0.7242 20 1 3.6483 2.3090 1.0496 21 8 3.3717 0.4016 1.8327 22 6 4.3163 0.7257 2.8548 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 2.5285 2.8217 -1.4870 27 1 1.6791 1.3953 -2.1570 28 1 5.2184 -1.2314 -6.4319 29 1 4.5251 -0.2599 -0.2579 30 1 5.2947 1.3509 -0.3029 31 1 5.3230 0.7101 2.4374 32 1 4.1008 1.7197 3.2467 33 1 4.2452 -0.0053 3.6603 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234810990.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:47 Heat of formation + Delta-G solvation = -166.287458 kcal Electronic energy + Delta-G solvation = -19421.276223 eV Core-core repulsion = 16188.451019 eV Total energy + Delta-G solvation = -3232.825204 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.086 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.31707 -37.01229 -35.52098 -35.19855 -33.93124 -33.01321 -29.51468 -28.22571 -26.34490 -26.21135 -26.01750 -21.95444 -20.87702 -18.70831 -17.62391 -17.23298 -16.33356 -15.71513 -15.42091 -15.07795 -14.93559 -14.75075 -14.21328 -14.13042 -13.65750 -13.39775 -12.55275 -12.47079 -12.32153 -11.95638 -11.65309 -11.41232 -11.18754 -11.15424 -11.05492 -10.83236 -10.54776 -10.39259 -10.27347 -10.19241 -9.60466 -9.35127 -9.18759 -8.84430 -8.10308 -6.63673 -5.24087 2.25470 3.11752 3.17740 3.26613 3.73037 3.88150 4.12462 4.54858 4.62405 4.72935 5.01169 5.10462 5.23931 5.30448 5.41533 5.44614 5.53740 5.63493 5.72651 5.79592 5.85042 5.90875 6.00425 6.16150 6.21742 6.36233 6.85530 7.18687 7.40358 7.43469 7.51021 8.10116 8.96373 10.29917 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.022044 B = 0.007441 C = 0.006817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.870072 B = 3761.912684 C = 4106.499714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.352 6.352 3 C 0.081 3.919 4 H 0.081 0.919 5 C 0.105 3.895 6 N -1.012 6.012 7 S 2.729 3.271 8 O -1.001 7.001 9 O -1.001 7.001 10 C -1.015 5.015 11 H 0.105 0.895 12 C 0.132 3.868 13 N -0.850 5.850 14 Si 0.920 3.080 15 H -0.267 1.267 16 H -0.275 1.275 17 H -0.261 1.261 18 C 0.108 3.892 19 C 0.080 3.920 20 H 0.085 0.915 21 O -0.361 6.361 22 C 0.025 3.975 23 H 0.085 0.915 24 H 0.037 0.963 25 H 0.041 0.959 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.290 0.710 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.038 0.962 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.459 3.650 13.682 15.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.269 6.269 3 C 0.021 3.979 4 H 0.098 0.902 5 C -0.021 4.021 6 N -0.848 5.848 7 S 2.830 3.170 8 O -0.992 6.992 9 O -0.992 6.992 10 C -1.149 5.149 11 H 0.124 0.876 12 C -0.085 4.085 13 N -0.480 5.480 14 Si 0.744 3.256 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.185 1.185 18 C -0.019 4.019 19 C 0.020 3.980 20 H 0.103 0.897 21 O -0.279 6.279 22 C -0.071 4.071 23 H 0.103 0.897 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.089 0.911 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.766 3.919 12.959 14.715 hybrid contribution -0.586 -0.998 -0.156 1.168 sum -6.351 2.921 12.803 14.587 Atomic orbital electron populations 1.22811 0.81662 1.02771 0.99490 1.88073 1.18849 1.25509 1.94497 1.23467 0.93450 0.86164 0.94786 0.90152 1.22334 0.86704 0.96865 0.96237 1.59026 1.28923 1.75467 1.21365 1.00142 0.72436 0.75859 0.68528 1.93353 1.31893 1.89138 1.84781 1.93355 1.78326 1.68534 1.58990 1.30629 1.45897 1.25495 1.12894 0.87626 1.24765 0.90621 0.99580 0.93533 1.69902 1.29330 1.38661 1.10091 0.86163 0.79068 0.81244 0.79089 1.19231 1.20023 1.18543 1.21941 0.95121 1.01887 0.82971 1.23417 0.94883 0.92985 0.86710 0.89739 1.88056 1.58636 1.51706 1.29473 1.22841 0.92778 1.00342 0.91166 0.89697 0.94426 0.94006 0.91138 0.89813 0.89961 0.90521 0.91754 0.93706 0.94303 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.85 101.05 1.10 1.46 16 2 O -0.35 -5.84 10.08 -52.24 -0.53 -6.37 16 3 C 0.08 1.19 3.42 -24.46 -0.08 1.11 16 4 H 0.08 0.89 7.83 -51.93 -0.41 0.48 16 5 C 0.11 1.83 6.73 -2.41 -0.02 1.81 16 6 N -1.01 -21.76 3.70 -111.29 -0.41 -22.17 16 7 S 2.73 75.45 5.22 -107.50 -0.56 74.89 16 8 O -1.00 -30.13 17.60 -57.17 -1.01 -31.14 16 9 O -1.00 -29.84 17.60 -57.17 -1.01 -30.84 16 10 C -1.02 -29.29 9.75 30.60 0.30 -28.99 16 11 H 0.11 2.89 7.81 -52.49 -0.41 2.48 16 12 C 0.13 3.82 5.46 -17.82 -0.10 3.72 16 13 N -0.85 -25.64 13.19 55.43 0.73 -24.91 16 14 Si 0.92 21.37 29.54 -169.99 -5.02 16.35 16 15 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 17 H -0.26 -5.92 7.11 56.52 0.40 -5.52 16 18 C 0.11 1.99 6.76 -3.07 -0.02 1.97 16 19 C 0.08 1.16 3.27 -24.90 -0.08 1.08 16 20 H 0.08 0.96 7.88 -51.93 -0.41 0.56 16 21 O -0.36 -5.28 10.00 -52.24 -0.52 -5.80 16 22 C 0.03 0.27 10.88 101.05 1.10 1.36 16 23 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 25 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.08 1.50 8.14 -51.92 -0.42 1.07 16 28 H 0.29 7.84 8.31 -40.82 -0.34 7.51 16 29 H 0.08 1.51 8.06 -51.93 -0.42 1.09 16 30 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.04 0.33 8.11 -51.93 -0.42 -0.09 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 298.47 15.07 4.50 4.50 Total: -1.00 -37.20 298.47 -6.21 -43.41 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -4.58 Total: -1.44 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: 2.19 Total: -16.48 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.32 Total: -47.08 kcal Atomic # 8 Polarization: -71.09 SS G_CDS: -3.06 Total: -74.15 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 75.45 SS G_CDS: -0.56 Total: 74.89 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -37.20 -6.21 -43.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234810990.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.875 kcal (2) G-P(sol) polarization free energy of solvation -37.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds