Wall clock time and date at job start Mon Mar 30 2020 00:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21292 * 119.99931 * 2 1 4 4 C 1.46786 * 120.00075 * 179.97438 * 2 1 3 5 5 C 1.40019 * 120.22292 * 359.72315 * 4 2 1 6 6 C 1.37680 * 119.87969 * 179.76285 * 5 4 2 7 7 N 1.48024 * 119.83078 * 180.23494 * 6 5 4 8 8 O 1.21798 * 119.99834 * 180.25976 * 7 6 5 9 9 O 1.21804 * 119.99682 * 0.25495 * 7 6 5 10 10 C 1.38623 * 120.33818 * 0.49504 * 6 5 4 11 11 C 1.38049 * 120.45457 * 359.76072 * 10 6 5 12 12 C 1.38690 * 120.11513 * 0.02562 * 11 10 6 13 13 O 1.35593 * 120.17402 * 179.97438 * 12 11 10 14 14 C 1.42900 * 117.00115 * 0.02669 * 13 12 11 15 15 C 1.50694 * 109.47322 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00073 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99798 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00386 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99719 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47048 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47298 * 119.99798 * 19 17 15 22 22 H 1.48496 * 109.46778 * 239.99586 * 19 17 15 23 23 H 1.08999 * 109.47368 * 269.99929 * 1 2 3 24 24 H 1.08994 * 109.47145 * 30.00783 * 1 2 3 25 25 H 1.09013 * 109.46924 * 150.00111 * 1 2 3 26 26 H 1.08001 * 120.05771 * 359.97438 * 5 4 2 27 27 H 1.07998 * 119.77048 * 179.74175 * 10 6 5 28 28 H 1.08008 * 119.94392 * 179.97438 * 11 10 6 29 29 H 1.08998 * 109.46783 * 299.99924 * 14 13 12 30 30 H 1.09000 * 109.47158 * 59.99429 * 14 13 12 31 31 H 0.97004 * 120.00005 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2410 -1.2712 0.0006 5 6 1.5456 -2.4865 0.0070 6 6 2.2411 -3.6747 0.0025 7 7 1.5049 -4.9589 0.0040 8 8 2.1171 -6.0118 0.0049 9 8 0.2869 -4.9625 0.0045 10 6 3.6274 -3.6746 0.0021 11 6 4.3270 -2.4845 0.0011 12 6 3.6454 -1.2766 0.0011 13 8 4.3314 -0.1070 0.0007 14 6 5.7579 -0.1915 -0.0003 15 6 6.3434 1.1970 -0.0013 16 1 5.6914 2.0580 -0.0016 17 6 7.7115 1.3683 -0.0029 18 7 8.5055 0.3199 -0.0031 19 14 8.4373 3.0896 -0.0034 20 1 7.3395 4.0896 -0.0025 21 1 9.2761 3.2735 1.2081 22 1 9.2732 3.2739 -1.2168 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8901 -0.5139 26 1 0.4656 -2.4918 0.0119 27 1 4.1637 -4.6120 0.0028 28 1 5.4070 -2.4941 0.0012 29 1 6.0908 -0.7260 0.8894 30 1 6.0895 -0.7260 -0.8905 31 1 9.4680 0.4404 -0.0046 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270422806.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:18:12 Heat of formation + Delta-G solvation = -75.902273 kcal Electronic energy + Delta-G solvation = -19299.548813 eV Core-core repulsion = 15935.199054 eV Total energy + Delta-G solvation = -3364.349760 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.25444 -41.74720 -39.82126 -38.71938 -37.64751 -35.17825 -33.52139 -32.35025 -30.65344 -29.71292 -27.17931 -25.76304 -24.91546 -23.03014 -21.59548 -19.88847 -19.63762 -19.36222 -18.66586 -18.60606 -17.37930 -16.97865 -16.86377 -16.58362 -15.97933 -15.85891 -15.38465 -14.83012 -14.54639 -14.07028 -13.89400 -13.13412 -13.03632 -13.01332 -12.98337 -12.93049 -12.64324 -12.37993 -12.34253 -12.25428 -12.19376 -11.52674 -10.81772 -10.79469 -10.64802 -9.85746 -8.47502 -6.60515 -1.17547 -0.68094 0.24461 0.32311 1.21445 1.36079 1.36451 1.50861 2.04762 2.23720 2.38659 2.83627 2.88435 3.23706 3.44117 3.50680 3.80115 4.06918 4.18610 4.32280 4.44767 4.51342 4.62296 4.69536 4.80609 4.82602 4.94956 5.21037 5.31253 5.42950 5.69326 6.22087 6.53372 6.55816 6.58944 7.10886 8.64265 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.024678 B = 0.004991 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.354475 B = 5608.486394 C = 6722.393992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.389 3.611 3 O -0.482 6.482 4 C -0.229 4.229 5 C 0.053 3.947 6 C -0.116 4.116 7 N 0.044 4.956 8 O -0.195 6.195 9 O -0.159 6.159 10 C 0.025 3.975 11 C -0.225 4.225 12 C 0.217 3.783 13 O -0.290 6.290 14 C 0.197 3.803 15 C -0.558 4.558 16 H 0.060 0.940 17 C 0.020 3.980 18 N -0.920 5.920 19 Si 0.981 3.019 20 H -0.269 1.269 21 H -0.268 1.268 22 H -0.268 1.268 23 H 0.122 0.878 24 H 0.095 0.905 25 H 0.115 0.885 26 H 0.202 0.798 27 H 0.177 0.823 28 H 0.154 0.846 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.015 -6.460 0.101 15.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.268 3.732 3 O -0.359 6.359 4 C -0.231 4.231 5 C 0.035 3.965 6 C -0.200 4.200 7 N 0.559 4.441 8 O -0.403 6.403 9 O -0.377 6.377 10 C 0.006 3.994 11 C -0.245 4.245 12 C 0.165 3.835 13 O -0.199 6.199 14 C 0.124 3.876 15 C -0.595 4.595 16 H 0.078 0.922 17 C -0.180 4.180 18 N -0.558 5.558 19 Si 0.804 3.196 20 H -0.194 1.194 21 H -0.193 1.193 22 H -0.193 1.193 23 H 0.140 0.860 24 H 0.114 0.886 25 H 0.134 0.866 26 H 0.219 0.781 27 H 0.194 0.806 28 H 0.171 0.829 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.166 -5.160 0.099 14.142 hybrid contribution 0.989 0.064 -0.002 0.991 sum -12.177 -5.097 0.097 13.201 Atomic orbital electron populations 1.22295 0.88621 1.06750 1.06816 1.22908 0.93786 0.85795 0.70731 1.90694 1.73242 1.34911 1.37021 1.20193 0.90116 0.96778 1.16044 1.21312 1.03025 0.86678 0.85522 1.20825 0.92615 0.83494 1.23107 1.43507 1.01039 1.02764 0.96794 1.94545 1.69905 1.20312 1.55507 1.94488 0.95704 1.94254 1.53243 1.21095 0.91028 1.00110 0.87197 1.21449 1.02321 0.90423 1.10271 1.20391 0.92442 0.86729 0.83986 1.86345 1.23926 1.27244 1.82377 1.20601 0.71551 0.98970 0.96469 1.21230 0.92315 0.91971 1.53970 0.92185 1.25801 0.96306 1.02578 0.93349 1.70002 1.05007 1.31530 1.49223 0.85157 0.78178 0.77677 0.78605 1.19377 1.19305 1.19317 0.86008 0.88605 0.86611 0.78073 0.80610 0.82855 0.96182 0.96199 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.82 9.75 71.24 0.69 -2.13 16 2 C 0.39 11.13 7.21 27.92 0.20 11.33 16 3 O -0.48 -19.56 15.91 17.88 0.28 -19.27 16 4 C -0.23 -6.57 5.88 -20.07 -0.12 -6.69 16 5 C 0.05 1.15 8.86 22.57 0.20 1.35 16 6 C -0.12 -2.83 6.84 36.33 0.25 -2.59 16 7 N 0.04 1.13 4.45 -46.55 -0.21 0.93 16 8 O -0.19 -5.45 18.43 18.89 0.35 -5.10 16 9 O -0.16 -3.96 18.43 18.88 0.35 -3.61 16 10 C 0.02 0.63 9.54 22.32 0.21 0.84 16 11 C -0.23 -7.09 9.03 22.33 0.20 -6.89 16 12 C 0.22 7.91 6.71 22.92 0.15 8.07 16 13 O -0.29 -13.66 8.19 -68.08 -0.56 -14.22 16 14 C 0.20 10.10 4.49 71.23 0.32 10.42 16 15 C -0.56 -31.70 9.43 25.60 0.24 -31.46 16 16 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 17 C 0.02 1.09 5.46 84.66 0.46 1.56 16 18 N -0.92 -51.32 13.29 21.45 0.28 -51.04 16 19 Si 0.98 42.70 29.54 68.60 2.03 44.72 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 23 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.12 0.99 6.48 -2.38 -0.02 0.97 16 26 H 0.20 2.65 5.90 -2.91 -0.02 2.63 16 27 H 0.18 3.67 7.59 -2.91 -0.02 3.65 16 28 H 0.15 5.09 6.30 -2.91 -0.02 5.07 16 29 H 0.02 1.06 7.66 -2.39 -0.02 1.04 16 30 H 0.02 1.05 7.66 -2.39 -0.02 1.03 16 31 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -68.11 286.75 6.52 -61.58 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: 1.18 Total: 2.21 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 2.82 Total: -16.20 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 0.08 Total: -50.11 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: 0.42 Total: -42.21 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -68.11 6.52 -61.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270422806.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.318 kcal (2) G-P(sol) polarization free energy of solvation -68.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds