Wall clock time and date at job start Mon Mar 30 2020 00:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38514 * 120.82503 * 2 1 4 4 Cl 1.73599 * 120.25636 * 359.95830 * 3 2 1 5 5 C 1.38392 * 119.48288 * 179.97438 * 3 2 1 6 6 N 1.31912 * 121.20347 * 0.02562 * 5 3 2 7 7 C 1.32340 * 121.79702 * 359.97360 * 6 5 3 8 8 N 1.38465 * 119.81088 * 180.02562 * 7 6 5 9 9 C 1.46906 * 110.99708 * 64.56123 * 8 7 6 10 10 C 1.46892 * 110.99863 * 300.60666 * 8 7 6 11 11 C 1.50698 * 109.47155 * 190.00109 * 10 8 7 12 12 H 1.08002 * 120.00116 * 0.02562 * 11 10 8 13 13 C 1.37876 * 120.00304 * 179.97438 * 11 10 8 14 14 N 1.31515 * 119.99787 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00407 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47066 * 59.99874 * 15 13 11 17 17 H 1.48496 * 109.47511 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47005 * 300.00434 * 15 13 11 19 19 C 1.39931 * 120.82701 * 180.25425 * 2 1 3 20 20 C 1.43200 * 120.60489 * 0.03534 * 19 2 1 21 21 N 3.49450 * 81.59148 * 180.27832 * 2 1 3 22 22 H 1.08998 * 109.47243 * 90.00376 * 1 2 3 23 23 H 1.09005 * 109.46661 * 209.99915 * 1 2 3 24 24 H 1.08996 * 109.47145 * 329.99947 * 1 2 3 25 25 H 1.08004 * 119.39308 * 180.02562 * 5 3 2 26 26 H 1.08991 * 109.47452 * 54.23600 * 9 8 7 27 27 H 1.09000 * 109.46662 * 174.23431 * 9 8 7 28 28 H 1.08994 * 109.47050 * 294.22657 * 9 8 7 29 29 H 1.09001 * 109.47659 * 310.00350 * 10 8 7 30 30 H 1.08999 * 109.47775 * 70.00209 * 10 8 7 31 31 H 0.97001 * 119.99995 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2167 1.1895 0.0000 4 17 1.3773 2.7090 -0.0011 5 6 3.6003 1.1571 0.0005 6 7 4.2571 0.0131 0.0005 7 6 3.6288 -1.1517 0.0006 8 7 4.3594 -2.3279 0.0011 9 6 5.1371 -2.4639 1.2400 10 6 5.2307 -2.4069 -1.1788 11 6 5.8206 -3.7902 -1.2760 12 1 5.5727 -4.5363 -0.5355 13 6 6.6760 -4.1038 -2.3109 14 7 6.9776 -3.1955 -3.2129 15 14 7.4078 -5.8183 -2.4310 16 1 6.3145 -6.8156 -2.5546 17 1 8.2885 -5.8982 -3.6239 18 1 8.2025 -6.1040 -1.2094 19 6 2.2240 -1.2016 -0.0053 20 6 1.5392 -2.4592 -0.0117 21 7 0.9959 -3.4569 -0.0168 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3633 -0.8901 0.5139 24 1 -0.3633 0.8899 0.5138 25 1 4.1522 2.0854 0.0010 26 1 4.4724 -2.3697 2.0985 27 1 5.6204 -3.4407 1.2601 28 1 5.8958 -1.6824 1.2803 29 1 4.6480 -2.1966 -2.0757 30 1 6.0335 -1.6752 -1.0875 31 1 7.5791 -3.4162 -3.9412 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273049219.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:28 Heat of formation + Delta-G solvation = 48.217555 kcal Electronic energy + Delta-G solvation = -17240.686255 eV Core-core repulsion = 14354.720650 eV Total energy + Delta-G solvation = -2885.965604 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.93356 -38.52567 -37.76717 -37.33068 -35.01999 -34.63557 -31.76962 -29.33006 -29.19888 -27.16549 -25.34140 -24.34298 -21.81233 -20.19818 -18.78604 -18.43572 -17.50828 -16.87902 -16.40960 -16.17051 -15.28369 -15.21104 -14.90983 -14.39412 -14.22223 -14.09875 -13.96634 -13.87208 -13.69989 -13.32890 -13.10668 -12.93335 -12.74427 -12.64326 -12.45841 -12.18256 -12.07533 -11.52177 -10.87322 -10.67079 -10.64777 -9.87614 -9.56746 -8.24476 -6.35213 -0.64605 -0.21530 0.86155 1.40542 1.43554 1.51358 1.62516 1.81599 2.36045 2.56633 2.70856 2.74889 3.09312 3.34697 3.40964 3.74974 4.00713 4.17292 4.40380 4.49384 4.60288 4.66593 4.78403 4.94184 4.96769 5.10782 5.13726 5.19060 5.59196 5.93328 5.95600 6.36761 6.50476 6.65076 6.77778 7.33882 8.86774 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.027495 B = 0.005232 C = 0.004791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.116800 B = 5349.915448 C = 5842.432074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.029 3.971 3 C -0.102 4.102 4 Cl -0.019 7.019 5 C 0.163 3.837 6 N -0.522 5.522 7 C 0.349 3.651 8 N -0.513 5.513 9 C 0.050 3.950 10 C 0.226 3.774 11 C -0.530 4.530 12 H 0.065 0.935 13 C 0.008 3.992 14 N -0.930 5.930 15 Si 0.969 3.031 16 H -0.273 1.273 17 H -0.281 1.281 18 H -0.263 1.263 19 C -0.069 4.069 20 C 0.293 3.707 21 N -0.441 5.441 22 H 0.104 0.896 23 H 0.076 0.924 24 H 0.108 0.892 25 H 0.199 0.801 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.033 0.967 29 H -0.004 1.004 30 H -0.011 1.011 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.202 12.894 8.215 18.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.018 3.982 3 C -0.132 4.132 4 Cl 0.010 6.990 5 C 0.002 3.998 6 N -0.235 5.235 7 C 0.119 3.881 8 N -0.236 5.236 9 C -0.097 4.097 10 C 0.101 3.899 11 C -0.569 4.569 12 H 0.083 0.917 13 C -0.191 4.191 14 N -0.569 5.569 15 Si 0.793 3.207 16 H -0.198 1.198 17 H -0.206 1.206 18 H -0.188 1.188 19 C -0.077 4.077 20 C -0.023 4.023 21 N -0.117 5.117 22 H 0.122 0.878 23 H 0.094 0.906 24 H 0.127 0.873 25 H 0.216 0.784 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.052 0.948 29 H 0.014 0.986 30 H 0.007 0.993 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.413 11.093 8.036 17.829 hybrid contribution 0.635 0.178 -0.470 0.810 sum -10.778 11.271 7.565 17.333 Atomic orbital electron populations 1.21121 0.86354 1.05378 1.05293 1.20379 0.98739 0.88592 0.90474 1.21654 0.93478 0.88456 1.09575 1.98380 1.77181 1.26701 1.96775 1.23367 0.90060 0.96857 0.89474 1.68229 1.41105 0.98804 1.15313 1.20344 0.89931 0.88723 0.89099 1.60201 1.29963 1.27414 1.06055 1.22193 0.96296 1.02237 0.88945 1.19316 0.88888 0.96488 0.85166 1.21355 1.27053 0.97326 1.11124 0.91728 1.25854 0.96674 1.01624 0.94935 1.70074 1.36428 1.35893 1.14541 0.85445 0.78265 0.78995 0.77990 1.19814 1.20604 1.18815 1.16576 0.90922 0.87865 1.12333 1.24925 0.91970 0.92252 0.93118 1.81149 1.11050 1.10064 1.09389 0.87790 0.90559 0.87311 0.78419 0.90723 0.90781 0.94840 0.98631 0.99318 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 9.29 71.23 0.66 -1.40 16 2 C 0.03 0.68 5.95 -19.39 -0.12 0.56 16 3 C -0.10 -2.15 6.33 22.37 0.14 -2.01 16 4 Cl -0.02 -0.30 27.44 -2.72 -0.07 -0.37 16 5 C 0.16 3.98 10.96 84.72 0.93 4.91 16 6 N -0.52 -17.91 9.77 -192.32 -1.88 -19.79 16 7 C 0.35 13.07 5.27 133.62 0.70 13.78 16 8 N -0.51 -22.61 4.10 -730.23 -2.99 -25.61 16 9 C 0.05 1.91 9.17 127.69 1.17 3.08 16 10 C 0.23 12.13 4.45 85.56 0.38 12.51 16 11 C -0.53 -30.11 8.54 25.60 0.22 -29.90 16 12 H 0.06 3.59 7.10 -2.91 -0.02 3.57 16 13 C 0.01 0.46 5.46 84.65 0.46 0.92 16 14 N -0.93 -55.83 13.29 21.45 0.28 -55.54 16 15 Si 0.97 44.41 29.54 68.60 2.03 46.44 16 16 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 19 C -0.07 -2.20 5.77 -21.05 -0.12 -2.32 16 20 C 0.29 10.27 13.45 88.33 1.19 11.46 16 21 N -0.44 -16.80 18.54 19.00 0.35 -16.45 16 22 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.08 1.33 7.20 -2.38 -0.02 1.31 16 24 H 0.11 1.30 7.01 -2.39 -0.02 1.28 16 25 H 0.20 3.45 8.06 -2.91 -0.02 3.43 16 26 H 0.07 2.41 8.10 -2.39 -0.02 2.39 16 27 H 0.07 2.98 6.91 -2.39 -0.02 2.96 16 28 H 0.03 1.29 8.05 -2.39 -0.02 1.27 16 29 H 0.00 -0.26 8.05 -2.39 -0.02 -0.28 16 30 H -0.01 -0.64 8.06 -2.39 -0.02 -0.66 16 31 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -67.40 293.62 4.50 -62.90 By element: Atomic # 1 Polarization: -4.33 SS G_CDS: 1.16 Total: -3.17 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 5.62 Total: 11.58 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -4.23 Total: -117.39 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -0.07 Total: -0.37 kcal Total: -67.40 4.50 -62.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273049219.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.122 kcal (2) G-P(sol) polarization free energy of solvation -67.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds