Wall clock time and date at job start Mon Mar 30 2020 00:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31728 * 119.73036 * 2 1 4 4 C 1.32532 * 121.65946 * 179.97438 * 3 2 1 5 5 N 1.38645 * 119.54248 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99793 * 359.97438 * 5 4 3 7 7 C 1.53003 * 109.46708 * 180.02562 * 6 5 4 8 8 C 1.50708 * 109.46949 * 179.97438 * 7 6 5 9 9 H 1.07997 * 119.99690 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00050 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99915 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00185 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46887 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47066 * 120.00377 * 12 10 8 15 15 H 1.48499 * 109.47339 * 240.00877 * 12 10 8 16 16 C 1.39466 * 120.91946 * 0.25575 * 4 3 2 17 17 Cl 1.73596 * 120.31705 * 179.74854 * 16 4 3 18 18 C 1.36973 * 119.36369 * 359.49031 * 16 4 3 19 19 C 1.39555 * 119.73829 * 179.97438 * 2 1 3 20 20 C 1.43204 * 120.47445 * 0.04415 * 19 2 1 21 21 N 3.48960 * 80.37585 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.47309 * 90.00022 * 1 2 3 23 23 H 1.08999 * 109.46732 * 209.99418 * 1 2 3 24 24 H 1.08991 * 109.47700 * 329.99762 * 1 2 3 25 25 H 0.97005 * 119.99947 * 179.97438 * 5 4 3 26 26 H 1.08998 * 109.47134 * 299.99608 * 6 5 4 27 27 H 1.08994 * 109.47397 * 59.99899 * 6 5 4 28 28 H 1.09000 * 109.47195 * 299.99415 * 7 6 5 29 29 H 1.08994 * 109.47584 * 59.99634 * 7 6 5 30 30 H 0.97000 * 120.00246 * 179.97438 * 11 10 8 31 31 H 1.07993 * 120.76307 * 180.26385 * 18 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1603 1.1439 0.0000 4 6 3.4848 1.1885 0.0005 5 7 4.1275 2.4170 -0.0001 6 6 3.3427 3.6541 -0.0018 7 6 4.2877 4.8574 -0.0027 8 6 3.4805 6.1301 -0.0051 9 1 2.4015 6.0850 -0.0063 10 6 4.1196 7.3518 -0.0058 11 7 5.4336 7.4065 -0.0048 12 14 3.1191 8.9292 -0.0095 13 1 1.6716 8.5972 -0.0106 14 1 3.4433 9.7238 1.2024 15 1 3.4468 9.7204 -1.2226 16 6 4.2413 0.0168 -0.0043 17 17 5.9756 0.0935 -0.0101 18 6 3.6028 -1.1949 0.0010 19 6 2.1993 -1.2118 0.0005 20 6 1.4878 -2.4546 0.0001 21 7 0.9236 -3.4405 -0.0015 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5137 24 1 -0.3634 0.8899 0.5138 25 1 5.0967 2.4574 0.0007 26 1 2.7150 3.6849 -0.8923 27 1 2.7135 3.6865 0.8876 28 1 4.9158 4.8268 0.8876 29 1 4.9167 4.8248 -0.8923 30 1 5.8832 8.2660 -0.0057 31 1 4.1663 -2.1162 0.0018 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292643401.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:07 Heat of formation + Delta-G solvation = 28.459680 kcal Electronic energy + Delta-G solvation = -16507.227740 eV Core-core repulsion = 13620.405370 eV Total energy + Delta-G solvation = -2886.822370 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.67787 -38.28018 -37.59167 -37.11202 -35.18130 -33.93921 -33.02296 -30.94825 -28.67753 -26.79038 -24.37390 -23.80220 -22.44208 -20.16819 -18.92417 -18.34423 -17.86419 -16.49191 -16.48003 -15.90995 -15.67377 -15.48104 -14.94148 -14.40653 -14.30652 -14.17910 -14.07432 -13.95272 -13.45902 -13.19179 -13.11384 -13.10304 -12.76246 -12.46987 -12.26112 -12.15817 -11.55174 -11.36459 -11.16110 -10.69017 -10.61834 -10.51903 -8.78785 -8.21638 -6.31854 -0.32362 0.04132 0.97798 1.43613 1.44989 1.57520 1.68547 1.91512 2.04913 2.44536 2.75709 2.87226 3.13989 3.23978 3.57760 3.68417 4.22146 4.43910 4.49511 4.58207 4.63088 4.72503 4.80093 4.91687 4.97535 5.27863 5.44452 5.60993 5.73534 5.94406 6.15882 6.21993 6.48235 6.82792 7.00584 7.37873 8.90672 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.025218 B = 0.004285 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.063772 B = 6532.425059 C = 7616.733881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.243 3.757 3 N -0.547 5.547 4 C 0.439 3.561 5 N -0.697 5.697 6 C 0.152 3.848 7 C 0.017 3.983 8 C -0.539 4.539 9 H 0.066 0.934 10 C 0.004 3.996 11 N -0.930 5.930 12 Si 0.965 3.035 13 H -0.260 1.260 14 H -0.280 1.280 15 H -0.280 1.280 16 C -0.176 4.176 17 Cl -0.049 7.049 18 C 0.042 3.958 19 C -0.156 4.156 20 C 0.298 3.702 21 N -0.459 5.459 22 H 0.103 0.897 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.414 0.586 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.003 0.997 29 H 0.003 0.997 30 H 0.264 0.736 31 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.185 -15.847 -0.057 16.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.099 3.901 3 N -0.267 5.267 4 C 0.198 3.802 5 N -0.324 5.324 6 C 0.028 3.972 7 C -0.021 4.021 8 C -0.577 4.577 9 H 0.084 0.916 10 C -0.194 4.194 11 N -0.570 5.570 12 Si 0.790 3.210 13 H -0.184 1.184 14 H -0.206 1.206 15 H -0.206 1.206 16 C -0.210 4.210 17 Cl -0.020 7.020 18 C 0.015 3.985 19 C -0.166 4.166 20 C -0.016 4.016 21 N -0.136 5.136 22 H 0.122 0.878 23 H 0.104 0.896 24 H 0.111 0.889 25 H 0.253 0.747 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.021 0.979 29 H 0.021 0.979 30 H 0.073 0.927 31 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -5.276 -16.211 -0.059 17.049 hybrid contribution 1.307 0.772 0.006 1.518 sum -3.969 -15.440 -0.053 15.942 Atomic orbital electron populations 1.20968 0.86161 1.04741 1.05074 1.21564 0.97820 0.85309 0.85420 1.67444 1.06049 1.29337 1.23885 1.18507 0.88562 0.85792 0.87338 1.45227 1.09731 1.02917 1.74537 1.21300 0.93768 0.81216 1.00867 1.19181 0.94779 0.92139 0.95960 1.21485 0.93789 0.91505 1.50950 0.91619 1.25896 0.95969 1.02978 0.94583 1.70081 1.09151 1.26388 1.51340 0.85393 0.79267 0.78741 0.77628 1.18425 1.20580 1.20573 1.20691 0.86337 0.93851 1.20140 1.98373 1.07773 1.98364 1.97506 1.21129 0.92002 0.97491 0.87882 1.16273 0.91966 0.87558 1.20822 1.24999 0.92628 0.91845 0.92148 1.81291 1.09235 1.11407 1.11652 0.87849 0.89572 0.88937 0.74711 0.92337 0.92332 0.97873 0.97871 0.92701 0.80518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 9.78 71.24 0.70 -1.15 16 2 C 0.24 5.32 6.82 42.89 0.29 5.61 16 3 N -0.55 -15.24 9.45 -180.26 -1.70 -16.94 16 4 C 0.44 12.48 7.47 133.23 1.00 13.48 16 5 N -0.70 -22.67 5.65 -345.00 -1.95 -24.62 16 6 C 0.15 5.87 5.61 86.38 0.48 6.36 16 7 C 0.02 0.82 5.09 29.85 0.15 0.97 16 8 C -0.54 -28.81 9.11 25.60 0.23 -28.58 16 9 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 10 C 0.00 0.23 5.46 84.65 0.46 0.69 16 11 N -0.93 -53.91 13.29 21.45 0.28 -53.62 16 12 Si 0.96 42.40 29.54 68.60 2.03 44.43 16 13 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 14 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 15 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 16 C -0.18 -4.06 6.32 22.27 0.14 -3.92 16 17 Cl -0.05 -1.07 27.57 -2.72 -0.08 -1.14 16 18 C 0.04 0.78 9.63 22.49 0.22 1.00 16 19 C -0.16 -3.07 5.75 -21.20 -0.12 -3.19 16 20 C 0.30 6.09 13.82 88.33 1.22 7.31 16 21 N -0.46 -11.07 18.54 19.00 0.35 -10.72 16 22 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 23 H 0.09 1.25 7.08 -2.39 -0.02 1.23 16 24 H 0.09 1.52 8.14 -2.39 -0.02 1.51 16 25 H 0.41 13.04 7.09 -92.70 -0.66 12.38 16 26 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 31 H 0.18 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -60.64 297.35 4.22 -56.41 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 0.51 Total: 7.63 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 4.77 Total: -1.42 kcal Atomic # 7 Polarization: -102.89 SS G_CDS: -3.02 Total: -105.90 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.08 Total: -1.14 kcal Total: -60.64 4.22 -56.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292643401.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.874 kcal (2) G-P(sol) polarization free energy of solvation -60.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds