Wall clock time and date at job start Sun Mar 29 2020 23:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34215 * 125.77201 * 2 1 4 4 N 1.39133 * 107.11237 * 180.02562 * 3 2 1 5 5 C 1.36235 * 139.28145 * 179.97438 * 4 3 2 6 6 C 1.33140 * 116.07782 * 179.97438 * 5 4 3 7 7 C 1.46747 * 125.23438 * 179.97438 * 6 5 4 8 8 O 1.21710 * 120.00017 * 6.63131 * 7 6 5 9 9 N 1.34783 * 120.00438 * 186.35205 * 7 6 5 10 10 C 1.46494 * 120.00236 * 186.13038 * 9 7 6 11 11 C 1.36896 * 119.99558 * 6.12729 * 9 7 6 12 12 H 1.08000 * 120.00040 * 42.86295 * 11 9 7 13 13 C 1.39001 * 119.99801 * 222.86939 * 11 9 7 14 14 N 1.31401 * 120.00195 * 8.28082 * 13 11 9 15 15 Si 1.86801 * 120.00020 * 188.28538 * 13 11 9 16 16 H 1.48502 * 109.47162 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47232 * 119.99592 * 15 13 11 18 18 H 1.48491 * 109.47368 * 239.99557 * 15 13 11 19 19 S 1.75799 * 109.53629 * 0.27065 * 6 5 4 20 20 C 1.35440 * 106.45682 * 359.97438 * 4 3 2 21 21 N 1.32268 * 108.77822 * 359.97438 * 20 4 3 22 22 H 1.09009 * 109.46270 * 90.00741 * 1 2 3 23 23 H 1.09000 * 109.47393 * 210.00215 * 1 2 3 24 24 H 1.08995 * 109.47245 * 330.01165 * 1 2 3 25 25 H 1.07998 * 126.44199 * 0.02562 * 3 2 1 26 26 H 1.07999 * 121.95914 * 0.02562 * 5 4 3 27 27 H 1.08997 * 109.47478 * 86.28772 * 10 9 7 28 28 H 1.09003 * 109.46826 * 206.29267 * 10 9 7 29 29 H 1.09004 * 109.47185 * 326.28912 * 10 9 7 30 30 H 0.96997 * 120.00402 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2916 1.0890 0.0000 4 7 3.6098 0.6438 -0.0006 5 6 4.8724 1.1554 -0.0013 6 6 5.8640 0.2669 -0.0011 7 6 7.2944 0.5946 -0.0023 8 8 7.6539 1.7511 0.1181 9 7 8.2103 -0.3858 -0.1312 10 6 9.6364 -0.0780 0.0019 11 6 7.8079 -1.6691 -0.3863 12 1 7.0287 -1.8569 -1.1101 13 6 8.4021 -2.7305 0.2863 14 7 9.2304 -2.4978 1.2796 15 14 8.0234 -4.4877 -0.2217 16 1 7.0675 -4.4794 -1.3581 17 1 9.2786 -5.1650 -0.6352 18 1 7.4225 -5.2159 0.9245 19 16 5.1961 -1.3593 -0.0078 20 6 3.5577 -0.7096 -0.0003 21 7 2.2900 -1.0869 0.0009 22 1 -0.3632 -0.0001 -1.0278 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5136 25 1 1.9617 2.1173 0.0004 26 1 5.0581 2.2194 -0.0012 27 1 9.9208 -0.1210 1.0532 28 1 10.2193 -0.8060 -0.5624 29 1 9.8301 0.9220 -0.3863 30 1 9.6454 -3.2384 1.7487 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334918985.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:59:15 Heat of formation + Delta-G solvation = 42.950580 kcal Electronic energy + Delta-G solvation = -17492.135242 eV Core-core repulsion = 14607.984950 eV Total energy + Delta-G solvation = -2884.150291 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.50970 -40.61252 -37.56657 -36.79993 -33.74068 -32.31780 -31.74462 -29.05638 -27.61819 -26.75069 -24.97590 -22.55199 -21.69109 -20.87844 -19.41579 -18.71925 -17.81560 -17.09818 -16.78041 -16.54626 -16.32104 -15.92971 -15.29157 -14.81179 -14.36342 -14.19675 -13.87120 -13.79050 -13.29101 -13.23847 -13.09948 -12.95009 -12.72696 -12.28940 -12.05446 -11.94435 -11.28804 -11.20647 -11.09599 -10.85334 -9.80143 -9.54208 -8.59170 -8.50150 -6.42111 -0.36458 0.17806 0.88265 1.09526 1.41709 1.45019 1.55223 1.58916 1.87291 2.16049 2.24513 2.78910 2.91366 3.54340 3.72192 4.06208 4.18409 4.38137 4.47729 4.74379 4.85897 4.88206 4.92502 5.03083 5.15163 5.18086 5.20525 5.65323 5.71479 5.93232 6.12462 6.80798 6.81892 7.22186 7.66687 8.45964 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.024135 B = 0.007294 C = 0.005740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.854338 B = 3838.054815 C = 4876.731102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.024 3.976 3 C -0.077 4.077 4 N -0.403 5.403 5 C 0.092 3.908 6 C -0.221 4.221 7 C 0.532 3.468 8 O -0.616 6.616 9 N -0.441 5.441 10 C 0.121 3.879 11 C -0.359 4.359 12 H 0.111 0.889 13 C 0.036 3.964 14 N -0.860 5.860 15 Si 0.959 3.041 16 H -0.248 1.248 17 H -0.262 1.262 18 H -0.269 1.269 19 S 0.260 5.740 20 C 0.066 3.934 21 N -0.505 5.505 22 H 0.084 0.916 23 H 0.069 0.931 24 H 0.100 0.900 25 H 0.216 0.784 26 H 0.202 0.798 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.212 1.904 -2.520 9.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.106 4.106 3 C -0.207 4.207 4 N -0.081 5.081 5 C -0.044 4.044 6 C -0.344 4.344 7 C 0.321 3.679 8 O -0.505 6.505 9 N -0.157 5.157 10 C -0.021 4.021 11 C -0.495 4.495 12 H 0.128 0.872 13 C -0.176 4.176 14 N -0.492 5.492 15 Si 0.780 3.220 16 H -0.171 1.171 17 H -0.187 1.187 18 H -0.194 1.194 19 S 0.520 5.480 20 C -0.295 4.295 21 N -0.231 5.231 22 H 0.103 0.897 23 H 0.088 0.912 24 H 0.118 0.882 25 H 0.233 0.767 26 H 0.218 0.782 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.719 0.312 -2.301 9.023 hybrid contribution 0.088 1.356 0.084 1.361 sum -8.632 1.668 -2.217 9.066 Atomic orbital electron populations 1.20199 0.83787 1.04122 1.03674 1.21614 0.98565 0.87480 1.02973 1.23178 0.78166 1.02412 1.16981 1.43790 1.06048 1.08058 1.50181 1.20512 0.80007 1.01385 1.02484 1.23399 0.97881 0.97711 1.15373 1.17191 0.83712 0.85507 0.81514 1.90649 1.81170 1.20430 1.58228 1.43440 1.05428 1.07323 1.59496 1.21322 0.80832 0.98968 1.01026 1.19784 1.22939 0.81797 1.24969 0.87219 1.26344 0.94431 1.03944 0.92833 1.69957 1.26261 1.35306 1.17661 0.85344 0.79799 0.77030 0.79859 1.17051 1.18672 1.19439 1.86490 0.82294 1.01005 1.78247 1.29531 1.04162 0.86145 1.09674 1.70458 0.97517 1.31041 1.24041 0.89727 0.91213 0.88172 0.76735 0.78163 0.93590 0.91523 0.92953 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.20 10.41 71.24 0.74 -0.46 16 2 C 0.02 0.73 7.05 41.32 0.29 1.03 16 3 C -0.08 -2.27 11.92 82.61 0.99 -1.28 16 4 N -0.40 -14.74 3.14 -354.77 -1.12 -15.85 16 5 C 0.09 3.46 10.94 82.86 0.91 4.36 16 6 C -0.22 -9.48 6.16 23.35 0.14 -9.33 16 7 C 0.53 25.61 7.59 86.47 0.66 26.27 16 8 O -0.62 -31.33 16.38 -4.38 -0.07 -31.40 16 9 N -0.44 -21.26 2.90 -663.38 -1.92 -23.18 16 10 C 0.12 5.45 8.89 127.77 1.14 6.58 16 11 C -0.36 -16.76 6.68 84.09 0.56 -16.20 16 12 H 0.11 5.00 5.67 -12.98 -0.07 4.93 16 13 C 0.04 1.63 5.21 84.94 0.44 2.07 16 14 N -0.86 -41.24 11.87 21.67 0.26 -40.98 16 15 Si 0.96 35.71 29.56 68.60 2.03 37.73 16 16 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 17 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 18 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16 19 S 0.26 10.80 18.76 -56.49 -1.06 9.74 16 20 C 0.07 2.70 8.92 179.61 1.60 4.30 16 21 N -0.50 -19.93 11.32 -184.70 -2.09 -22.02 16 22 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 23 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.22 4.24 8.06 -2.91 -0.02 4.22 16 26 H 0.20 6.52 7.98 -2.91 -0.02 6.50 16 27 H 0.05 2.16 7.64 -2.39 -0.02 2.14 16 28 H 0.07 2.86 7.91 -2.39 -0.02 2.84 16 29 H 0.05 2.23 7.46 -2.38 -0.02 2.21 16 30 H 0.29 12.69 8.31 -92.71 -0.77 11.92 16 Total: -1.00 -60.40 276.48 4.61 -55.79 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 1.12 Total: 12.83 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 7.47 Total: 17.34 kcal Atomic # 7 Polarization: -97.17 SS G_CDS: -4.87 Total: -102.04 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.07 Total: -31.40 kcal Atomic # 14 Polarization: 35.71 SS G_CDS: 2.03 Total: 37.73 kcal Atomic # 16 Polarization: 10.80 SS G_CDS: -1.06 Total: 9.74 kcal Total: -60.40 4.61 -55.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334918985.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.742 kcal (2) G-P(sol) polarization free energy of solvation -60.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds