Wall clock time and date at job start Mon Mar 30 2020 00:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37094 * 119.99959 * 2 1 4 4 H 1.08006 * 119.99908 * 204.39225 * 3 2 1 5 5 C 1.38943 * 120.00087 * 24.40091 * 3 2 1 6 6 N 1.31416 * 120.00299 * 12.63370 * 5 3 2 7 7 Si 1.86808 * 120.00191 * 192.63817 * 5 3 2 8 8 H 1.48501 * 109.46723 * 59.99719 * 7 5 3 9 9 H 1.48494 * 109.47401 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46841 * 299.99953 * 7 5 3 11 11 C 1.34780 * 119.99768 * 180.02562 * 2 1 3 12 12 O 1.21292 * 120.00102 * 179.97438 * 11 2 1 13 13 C 1.50700 * 119.99805 * 359.97438 * 11 2 1 14 14 C 1.50703 * 109.46605 * 180.02562 * 13 11 2 15 15 C 1.30910 * 121.84410 * 84.97864 * 14 13 11 16 16 S 1.75774 * 109.82225 * 180.02562 * 15 14 13 17 17 C 1.76251 * 90.70112 * 0.02562 * 16 15 14 18 18 N 1.32352 * 141.95185 * 179.97438 * 17 16 15 19 19 C 1.33881 * 109.13433 * 180.02562 * 18 17 16 20 20 C 1.34328 * 108.38585 * 359.97438 * 19 18 17 21 21 N 1.35148 * 109.21812 * 359.97438 * 17 16 15 22 22 H 1.09004 * 109.46938 * 265.86094 * 1 2 3 23 23 H 1.09003 * 109.46818 * 25.85994 * 1 2 3 24 24 H 1.08997 * 109.47298 * 145.86063 * 1 2 3 25 25 H 0.96998 * 119.99854 * 180.02562 * 6 5 3 26 26 H 1.09000 * 109.47417 * 60.00561 * 13 11 2 27 27 H 1.09001 * 109.47041 * 299.99628 * 13 11 2 28 28 H 1.07998 * 125.08576 * 0.04205 * 15 14 13 29 29 H 1.07999 * 125.79975 * 180.02562 * 19 18 17 30 30 H 1.08004 * 126.43833 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1583 1.2290 -0.3863 5 6 1.5489 2.3368 0.4971 6 7 0.4346 2.2490 1.1883 7 14 2.3238 4.0073 0.1829 8 1 2.4041 4.2483 -1.2803 9 1 1.4935 5.0647 0.8134 10 1 3.6896 4.0367 0.7651 11 6 2.1389 -1.1673 -0.0005 12 8 3.3518 -1.1673 -0.0010 13 6 1.3853 -2.4723 -0.0005 14 6 2.3646 -3.6178 -0.0005 15 6 2.8875 -4.0795 1.1073 16 16 3.9809 -5.4065 0.7425 17 6 3.6419 -5.2412 -0.9792 18 7 3.9511 -5.7600 -2.1569 19 6 3.2817 -5.1056 -3.1140 20 6 2.5332 -4.1538 -2.5325 21 7 2.7590 -4.2348 -1.1641 22 1 -0.3633 -0.0742 1.0250 23 1 -0.3633 0.9248 -0.4483 24 1 -0.3634 -0.8505 -0.5767 25 1 0.0145 3.0516 1.5349 26 1 0.7584 -2.5299 -0.8903 27 1 0.7590 -2.5302 0.8897 28 1 2.6781 -3.7017 2.0971 29 1 3.3341 -5.3090 -4.1734 30 1 1.8792 -3.4561 -3.0345 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336347464.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:20:25 Heat of formation + Delta-G solvation = 55.292948 kcal Electronic energy + Delta-G solvation = -17494.423056 eV Core-core repulsion = 14610.807970 eV Total energy + Delta-G solvation = -2883.615086 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.63951 -40.50012 -37.88918 -36.58425 -33.77383 -32.23438 -31.29891 -29.35933 -28.02135 -26.30160 -24.37031 -22.82960 -21.70611 -20.50889 -19.09291 -18.91943 -18.03912 -17.04520 -16.55396 -16.42880 -16.23982 -16.00742 -15.65734 -15.37031 -14.51955 -14.27077 -13.94499 -13.71405 -13.42134 -13.13376 -13.07270 -12.69454 -12.65948 -12.43016 -12.18936 -12.11429 -11.46638 -11.30644 -11.02231 -10.48274 -9.87819 -9.69925 -8.63690 -8.37081 -6.02397 -0.10659 -0.02666 0.61670 1.15474 1.36842 1.40775 1.50031 1.61346 1.88234 1.96633 2.26285 3.03123 3.06017 3.37923 3.58405 3.96037 4.04366 4.22383 4.31623 4.41259 4.52434 4.65129 4.70274 5.02697 5.10490 5.37779 5.42170 5.52938 5.83061 6.06548 6.44076 6.66237 7.13363 7.41972 7.97246 8.64849 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.033443 B = 0.005025 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.050977 B = 5571.110516 C = 5725.931575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.457 5.457 3 C -0.345 4.345 4 H 0.067 0.933 5 C 0.004 3.996 6 N -0.891 5.891 7 Si 0.984 3.016 8 H -0.269 1.269 9 H -0.269 1.269 10 H -0.279 1.279 11 C 0.440 3.560 12 O -0.628 6.628 13 C -0.062 4.062 14 C 0.090 3.910 15 C -0.209 4.209 16 S 0.207 5.793 17 C 0.104 3.896 18 N -0.494 5.494 19 C 0.007 3.993 20 C -0.060 4.060 21 N -0.401 5.401 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.275 0.725 26 H 0.116 0.884 27 H 0.141 0.859 28 H 0.216 0.784 29 H 0.218 0.782 30 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.508 -10.638 -1.900 11.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.175 5.175 3 C -0.473 4.473 4 H 0.085 0.915 5 C -0.199 4.199 6 N -0.529 5.529 7 Si 0.808 3.192 8 H -0.194 1.194 9 H -0.193 1.193 10 H -0.205 1.205 11 C 0.229 3.771 12 O -0.515 6.515 13 C -0.105 4.105 14 C -0.020 4.020 15 C -0.346 4.346 16 S 0.457 5.543 17 C -0.261 4.261 18 N -0.219 5.219 19 C -0.142 4.142 20 C -0.193 4.193 21 N -0.080 5.080 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.134 0.866 27 H 0.159 0.841 28 H 0.232 0.768 29 H 0.234 0.766 30 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -1.794 -11.925 -1.131 12.113 hybrid contribution -0.942 2.648 -0.783 2.918 sum -2.736 -9.278 -1.914 9.860 Atomic orbital electron populations 1.21538 0.79019 1.01106 1.01105 1.43781 1.06862 1.04319 1.62577 1.19486 1.00348 0.86132 1.41315 0.91541 1.25988 0.96979 1.02647 0.94268 1.70022 1.19418 1.30916 1.32576 0.85140 0.78019 0.77247 0.78824 1.19364 1.19292 1.20501 1.20636 0.87815 0.85749 0.82911 1.90541 1.16080 1.87796 1.57105 1.20419 0.95607 0.86810 1.07653 1.18640 1.02218 0.97536 0.83558 1.25122 1.03302 1.03083 1.03055 1.84213 1.49096 1.34415 0.86571 1.26744 1.00565 0.96091 1.02748 1.70533 1.26380 1.29235 0.95749 1.22964 0.96253 0.94626 1.00357 1.23357 1.09813 1.07102 0.79030 1.43930 1.32033 1.24916 1.07085 0.93152 0.92455 0.91042 0.91560 0.86562 0.84085 0.76760 0.76558 0.78051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.54 8.44 127.77 1.08 5.62 16 2 N -0.46 -22.01 3.01 -658.87 -1.98 -23.99 16 3 C -0.34 -18.90 9.24 84.04 0.78 -18.13 16 4 H 0.07 3.96 7.45 -2.91 -0.02 3.94 16 5 C 0.00 0.19 5.04 84.92 0.43 0.62 16 6 N -0.89 -44.96 10.83 21.66 0.23 -44.72 16 7 Si 0.98 41.25 29.57 68.60 2.03 43.28 16 8 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 9 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 10 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 11 C 0.44 19.90 7.62 87.66 0.67 20.57 16 12 O -0.63 -34.31 15.75 -3.07 -0.05 -34.36 16 13 C -0.06 -1.95 4.61 29.10 0.13 -1.81 16 14 C 0.09 2.92 5.24 41.73 0.22 3.14 16 15 C -0.21 -5.97 10.81 67.87 0.73 -5.24 16 16 S 0.21 5.75 23.37 -56.49 -1.32 4.43 16 17 C 0.10 3.56 8.92 179.68 1.60 5.17 16 18 N -0.49 -17.12 11.32 -196.81 -2.23 -19.35 16 19 C 0.01 0.20 11.82 83.49 0.99 1.19 16 20 C -0.06 -1.77 11.97 82.67 0.99 -0.78 16 21 N -0.40 -13.48 3.19 -342.28 -1.09 -14.57 16 22 H 0.05 2.01 7.83 -2.38 -0.02 1.99 16 23 H 0.06 2.47 6.80 -2.39 -0.02 2.46 16 24 H 0.07 2.11 6.61 -2.39 -0.02 2.10 16 25 H 0.27 13.04 8.31 -92.71 -0.77 12.27 16 26 H 0.12 3.05 7.41 -2.39 -0.02 3.04 16 27 H 0.14 3.53 8.09 -2.39 -0.02 3.51 16 28 H 0.22 4.92 8.06 -2.91 -0.02 4.89 16 29 H 0.22 4.20 8.06 -2.91 -0.02 4.18 16 30 H 0.20 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -71.75 278.77 4.38 -67.36 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 1.17 Total: 11.55 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 7.62 Total: 10.35 kcal Atomic # 7 Polarization: -97.56 SS G_CDS: -5.07 Total: -102.62 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -0.05 Total: -34.36 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 16 Polarization: 5.75 SS G_CDS: -1.32 Total: 4.43 kcal Total: -71.75 4.38 -67.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336347464.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.657 kcal (2) G-P(sol) polarization free energy of solvation -71.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds