Wall clock time and date at job start Mon Mar 30 2020 00:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34647 * 116.99700 * 2 1 4 4 O 1.21517 * 120.00111 * 0.02562 * 3 2 1 5 5 N 1.34778 * 120.00086 * 179.97438 * 3 2 1 6 6 C 1.39977 * 120.00138 * 184.62483 * 5 3 2 7 7 C 1.39004 * 119.99293 * 144.89065 * 6 5 3 8 8 C 1.38233 * 120.24028 * 179.97438 * 7 6 5 9 9 C 1.37995 * 120.23290 * 359.97438 * 8 7 6 10 10 C 1.39675 * 119.98481 * 0.06444 * 9 8 7 11 11 C 1.47679 * 120.12004 * 179.97438 * 10 9 8 12 12 O 1.21498 * 119.99618 * 179.97438 * 11 10 9 13 13 O 1.34732 * 119.99798 * 359.95741 * 11 10 9 14 14 C 1.34849 * 116.99616 * 179.97438 * 13 11 10 15 15 H 1.08003 * 120.00289 * 0.02562 * 14 13 11 16 16 C 1.38810 * 120.00020 * 180.02562 * 14 13 11 17 17 N 1.31415 * 120.00336 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00094 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47377 * 59.99852 * 18 16 14 20 20 H 1.48506 * 109.46894 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46817 * 299.99641 * 18 16 14 22 22 C 1.38570 * 119.99803 * 324.90943 * 6 5 3 23 23 H 1.09004 * 109.47376 * 59.99506 * 1 2 3 24 24 H 1.09005 * 109.46950 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47297 * 299.99012 * 1 2 3 26 26 H 0.96999 * 119.99748 * 4.63602 * 5 3 2 27 27 H 1.07992 * 119.87939 * 359.97438 * 7 6 5 28 28 H 1.07999 * 119.88689 * 179.97438 * 8 7 6 29 29 H 1.07998 * 120.01341 * 179.97438 * 9 8 7 30 30 H 0.96997 * 120.00906 * 179.97438 * 17 16 14 31 31 H 1.08001 * 120.10693 * 359.73042 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2189 0.0005 5 7 3.4092 1.2704 0.0005 6 6 4.0448 2.5137 0.0983 7 6 5.2404 2.6298 0.7977 8 6 5.8727 3.8550 0.8970 9 6 5.3217 4.9715 0.3020 10 6 4.1202 4.8659 -0.4024 11 6 3.5276 6.0590 -1.0399 12 8 2.4826 5.9645 -1.6525 13 8 4.1455 7.2522 -0.9418 14 6 3.5516 8.3007 -1.5470 15 1 2.6223 8.1616 -2.0794 16 6 4.1347 9.5589 -1.4858 17 7 5.2658 9.7283 -0.8386 18 14 3.3117 11.0116 -2.3237 19 1 1.9588 11.2147 -1.7461 20 1 4.1293 12.2332 -2.1124 21 1 3.1932 10.7415 -3.7791 22 6 3.4818 3.6286 -0.5019 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5136 0.8900 26 1 3.9374 0.4596 -0.0670 27 1 5.6769 1.7597 1.2652 28 1 6.8012 3.9388 1.4421 29 1 5.8185 5.9271 0.3822 30 1 5.6735 10.6073 -0.7961 31 1 2.5550 3.5394 -1.0491 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491033298.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:01 Heat of formation + Delta-G solvation = -122.350526 kcal Electronic energy + Delta-G solvation = -19147.044185 eV Core-core repulsion = 15780.680278 eV Total energy + Delta-G solvation = -3366.363907 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.91342 -39.39111 -38.34471 -36.58228 -35.17493 -34.79009 -32.17762 -30.81808 -29.77413 -27.54181 -25.67333 -23.53661 -23.07642 -21.10416 -20.35529 -18.82500 -17.88121 -17.63098 -16.71339 -16.61510 -15.92297 -15.52223 -14.67657 -14.49489 -14.45267 -14.25838 -14.13222 -13.63967 -13.30777 -12.59550 -12.47240 -12.26479 -11.69589 -11.54221 -11.36002 -11.20657 -10.96083 -10.61566 -10.46103 -10.39139 -10.17260 -9.82420 -9.04153 -8.66901 -8.57597 -8.09392 -6.44643 -4.06870 1.17007 1.54043 1.98797 2.68693 3.16630 3.19215 3.23396 3.51267 3.88661 4.06259 4.36333 4.56102 4.96057 5.05478 5.11231 5.15597 5.16549 5.29777 5.56074 5.62393 5.71934 5.87058 6.18886 6.31282 6.35850 6.59933 6.79154 7.02626 7.18137 7.21140 7.39208 7.93828 8.15715 8.72690 9.04235 9.85016 10.73106 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.029221 B = 0.004481 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.994206 B = 6247.647820 C = 7129.130641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.372 6.372 3 C 0.641 3.359 4 O -0.542 6.542 5 N -0.647 5.647 6 C 0.133 3.867 7 C -0.127 4.127 8 C -0.113 4.113 9 C -0.081 4.081 10 C -0.069 4.069 11 C 0.431 3.569 12 O -0.548 6.548 13 O -0.204 6.204 14 C -0.374 4.374 15 H 0.097 0.903 16 C 0.042 3.958 17 N -0.860 5.860 18 Si 0.946 3.054 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.269 1.269 22 C -0.070 4.070 23 H 0.066 0.934 24 H 0.103 0.897 25 H 0.065 0.935 26 H 0.416 0.584 27 H 0.127 0.873 28 H 0.132 0.868 29 H 0.145 0.855 30 H 0.271 0.729 31 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.488 -17.892 3.846 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.286 6.286 3 C 0.395 3.605 4 O -0.428 6.428 5 N -0.299 5.299 6 C 0.041 3.959 7 C -0.148 4.148 8 C -0.132 4.132 9 C -0.100 4.100 10 C -0.070 4.070 11 C 0.279 3.721 12 O -0.446 6.446 13 O -0.111 6.111 14 C -0.450 4.450 15 H 0.115 0.885 16 C -0.163 4.163 17 N -0.496 5.496 18 Si 0.770 3.230 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.194 1.194 22 C -0.090 4.090 23 H 0.085 0.915 24 H 0.121 0.879 25 H 0.084 0.916 26 H 0.252 0.748 27 H 0.145 0.855 28 H 0.150 0.850 29 H 0.163 0.837 30 H 0.081 0.919 31 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.054 -17.285 3.751 17.718 hybrid contribution -0.285 0.289 -0.374 0.552 sum -1.339 -16.995 3.377 17.379 Atomic orbital electron populations 1.23248 0.73927 1.03494 1.03213 1.86211 1.24560 1.30736 1.87083 1.18162 0.83226 0.82498 0.76655 1.91116 1.64218 1.34303 1.53153 1.41800 1.03326 1.08983 1.75831 1.17211 0.94336 0.83949 1.00392 1.20910 0.95653 0.98702 0.99499 1.20891 1.00264 0.91599 1.00446 1.21695 0.94096 0.99818 0.94396 1.19291 0.95689 0.92095 0.99974 1.20690 0.84433 0.84516 0.82443 1.90640 1.24297 1.86089 1.43561 1.83883 1.48481 1.14941 1.63808 1.21277 1.07704 0.84324 1.31700 0.88517 1.25368 0.95998 0.97972 0.96953 1.69960 1.16633 1.24247 1.38795 0.85705 0.78901 0.78825 0.79550 1.19377 1.20308 1.19393 1.21338 1.00527 0.90093 0.97064 0.91498 0.87864 0.91608 0.74816 0.85546 0.84995 0.83732 0.91874 0.83112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.49 10.56 101.05 1.07 1.55 16 2 O -0.37 -4.26 10.62 -40.34 -0.43 -4.69 16 3 C 0.64 9.30 8.59 54.06 0.46 9.76 16 4 O -0.54 -10.15 13.57 -19.29 -0.26 -10.42 16 5 N -0.65 -8.04 5.34 -14.30 -0.08 -8.12 16 6 C 0.13 2.02 6.29 -83.73 -0.53 1.50 16 7 C -0.13 -1.61 9.96 -39.30 -0.39 -2.00 16 8 C -0.11 -1.57 10.02 -39.67 -0.40 -1.97 16 9 C -0.08 -1.48 9.61 -39.13 -0.38 -1.86 16 10 C -0.07 -1.48 5.87 -105.00 -0.62 -2.10 16 11 C 0.43 11.62 7.83 34.59 0.27 11.90 16 12 O -0.55 -16.04 15.59 -19.26 -0.30 -16.34 16 13 O -0.20 -6.00 8.99 -21.63 -0.19 -6.20 16 14 C -0.37 -11.28 9.65 30.94 0.30 -10.98 16 15 H 0.10 2.94 6.86 -52.48 -0.36 2.58 16 16 C 0.04 1.18 5.50 -17.52 -0.10 1.08 16 17 N -0.86 -25.00 13.67 55.49 0.76 -24.24 16 18 Si 0.95 21.44 29.55 -169.99 -5.02 16.41 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 22 C -0.07 -1.38 8.23 -38.96 -0.32 -1.70 16 23 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.42 3.47 8.93 -40.82 -0.36 3.11 16 27 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 28 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 29 H 0.14 2.77 7.60 -52.49 -0.40 2.37 16 30 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.15 3.32 5.82 -52.49 -0.31 3.01 16 LS Contribution 288.83 15.07 4.35 4.35 Total: -1.00 -36.22 288.83 -4.47 -40.70 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -2.68 Total: 3.35 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -0.62 Total: 5.18 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.68 Total: -32.36 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -1.18 Total: -37.65 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -36.22 -4.47 -40.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491033298.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.651 kcal (2) G-P(sol) polarization free energy of solvation -36.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds