Wall clock time and date at job start Mon Mar 30 2020 00:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34647 * 116.99700 * 2 1 4 4 O 1.21517 * 120.00111 * 0.02562 * 3 2 1 5 5 N 1.34778 * 120.00086 * 179.97438 * 3 2 1 6 6 C 1.39977 * 120.00138 * 184.62483 * 5 3 2 7 7 C 1.39004 * 119.99293 * 144.89065 * 6 5 3 8 8 C 1.38233 * 120.24028 * 179.97438 * 7 6 5 9 9 C 1.37995 * 120.23290 * 359.97438 * 8 7 6 10 10 C 1.39675 * 119.98481 * 0.06444 * 9 8 7 11 11 C 1.47679 * 120.12004 * 179.97438 * 10 9 8 12 12 O 1.21498 * 119.99618 * 179.97438 * 11 10 9 13 13 O 1.34732 * 119.99798 * 359.95741 * 11 10 9 14 14 C 1.34849 * 116.99616 * 179.97438 * 13 11 10 15 15 H 1.08003 * 120.00289 * 0.02562 * 14 13 11 16 16 C 1.38810 * 120.00020 * 180.02562 * 14 13 11 17 17 N 1.31415 * 120.00336 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00094 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47377 * 59.99852 * 18 16 14 20 20 H 1.48506 * 109.46894 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46817 * 299.99641 * 18 16 14 22 22 C 1.38570 * 119.99803 * 324.90943 * 6 5 3 23 23 H 1.09004 * 109.47376 * 59.99506 * 1 2 3 24 24 H 1.09005 * 109.46950 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47297 * 299.99012 * 1 2 3 26 26 H 0.96999 * 119.99748 * 4.63602 * 5 3 2 27 27 H 1.07992 * 119.87939 * 359.97438 * 7 6 5 28 28 H 1.07999 * 119.88689 * 179.97438 * 8 7 6 29 29 H 1.07998 * 120.01341 * 179.97438 * 9 8 7 30 30 H 0.96997 * 120.00906 * 179.97438 * 17 16 14 31 31 H 1.08001 * 120.10693 * 359.73042 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2189 0.0005 5 7 3.4092 1.2704 0.0005 6 6 4.0448 2.5137 0.0983 7 6 5.2404 2.6298 0.7977 8 6 5.8727 3.8550 0.8970 9 6 5.3217 4.9715 0.3020 10 6 4.1202 4.8659 -0.4024 11 6 3.5276 6.0590 -1.0399 12 8 2.4826 5.9645 -1.6525 13 8 4.1455 7.2522 -0.9418 14 6 3.5516 8.3007 -1.5470 15 1 2.6223 8.1616 -2.0794 16 6 4.1347 9.5589 -1.4858 17 7 5.2658 9.7283 -0.8386 18 14 3.3117 11.0116 -2.3237 19 1 1.9588 11.2147 -1.7461 20 1 4.1293 12.2332 -2.1124 21 1 3.1932 10.7415 -3.7791 22 6 3.4818 3.6286 -0.5019 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5136 0.8900 26 1 3.9374 0.4596 -0.0670 27 1 5.6769 1.7597 1.2652 28 1 6.8012 3.9388 1.4421 29 1 5.8185 5.9271 0.3822 30 1 5.6735 10.6073 -0.7961 31 1 2.5550 3.5394 -1.0491 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491033298.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:00 Heat of formation + Delta-G solvation = -149.588302 kcal Electronic energy + Delta-G solvation = -19148.225304 eV Core-core repulsion = 15780.680278 eV Total energy + Delta-G solvation = -3367.545026 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.083 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.08729 -41.18764 -39.88785 -37.72984 -37.28328 -36.10909 -34.36836 -32.25591 -31.03350 -28.42067 -27.74891 -25.23556 -24.28946 -22.34031 -22.03655 -20.00289 -19.93778 -19.31364 -17.93118 -17.79848 -17.54865 -16.87761 -16.63705 -16.37709 -16.19349 -15.69848 -15.15484 -14.85239 -14.54844 -14.43136 -13.86772 -13.67640 -13.20460 -13.06796 -12.85919 -12.75017 -12.45153 -12.17881 -12.09476 -11.91206 -11.82133 -11.47802 -11.17927 -10.74562 -10.04181 -9.36378 -8.60158 -6.37689 -0.26457 0.20574 0.96116 1.31877 1.35567 1.47991 1.51675 1.80428 2.07370 2.62235 2.74406 3.00241 3.13537 3.89222 4.06292 4.17566 4.25213 4.30732 4.32046 4.39900 4.50786 4.69409 4.90072 5.05779 5.12805 5.18384 5.25388 5.39910 5.48269 5.76710 5.87516 6.17273 6.55027 6.83655 7.11081 7.66611 8.60122 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.029221 B = 0.004481 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.994206 B = 6247.647820 C = 7129.130641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.359 6.359 3 C 0.639 3.361 4 O -0.592 6.592 5 N -0.628 5.628 6 C 0.139 3.861 7 C -0.086 4.086 8 C -0.093 4.093 9 C -0.088 4.088 10 C -0.109 4.109 11 C 0.427 3.573 12 O -0.586 6.586 13 O -0.226 6.226 14 C -0.427 4.427 15 H 0.078 0.922 16 C 0.001 3.999 17 N -0.893 5.893 18 Si 1.020 2.980 19 H -0.263 1.263 20 H -0.253 1.253 21 H -0.262 1.262 22 C -0.087 4.087 23 H 0.056 0.944 24 H 0.147 0.853 25 H 0.060 0.940 26 H 0.440 0.560 27 H 0.190 0.810 28 H 0.182 0.818 29 H 0.127 0.873 30 H 0.283 0.717 31 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.228 -20.168 5.207 20.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.272 6.272 3 C 0.393 3.607 4 O -0.481 6.481 5 N -0.283 5.283 6 C 0.046 3.954 7 C -0.106 4.106 8 C -0.111 4.111 9 C -0.107 4.107 10 C -0.111 4.111 11 C 0.277 3.723 12 O -0.486 6.486 13 O -0.134 6.134 14 C -0.502 4.502 15 H 0.096 0.904 16 C -0.200 4.200 17 N -0.529 5.529 18 Si 0.838 3.162 19 H -0.188 1.188 20 H -0.176 1.176 21 H -0.186 1.186 22 C -0.108 4.108 23 H 0.075 0.925 24 H 0.165 0.835 25 H 0.079 0.921 26 H 0.281 0.719 27 H 0.207 0.793 28 H 0.199 0.801 29 H 0.145 0.855 30 H 0.092 0.908 31 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.697 -19.638 5.126 20.308 hybrid contribution -0.811 0.725 -0.715 1.302 sum -0.114 -18.913 4.411 19.421 Atomic orbital electron populations 1.23591 0.72408 1.06085 1.02549 1.86243 1.25937 1.28619 1.86442 1.18430 0.83723 0.82630 0.75880 1.91113 1.65467 1.36268 1.55292 1.41617 1.02843 1.08955 1.74848 1.17288 0.95012 0.83532 0.99556 1.21539 0.93022 1.00156 0.95901 1.21384 1.01184 0.90039 0.98500 1.21670 0.92945 1.01157 0.94891 1.19080 0.98193 0.90459 1.03366 1.21871 0.83836 0.85350 0.81214 1.90576 1.26039 1.86741 1.45259 1.83903 1.49127 1.15725 1.64604 1.21471 1.08491 0.85867 1.34370 0.90390 1.26571 0.96429 1.00136 0.96857 1.70027 1.17728 1.25759 1.39389 0.84676 0.78151 0.74989 0.78422 1.18780 1.17613 1.18610 1.21133 0.99889 0.91265 0.98514 0.92522 0.83529 0.92076 0.71920 0.79328 0.80120 0.85544 0.90772 0.86595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.76 10.56 113.37 1.20 1.96 16 2 O -0.36 -7.54 10.62 -55.56 -0.59 -8.13 16 3 C 0.64 17.90 8.59 129.79 1.12 19.02 16 4 O -0.59 -22.93 13.57 19.79 0.27 -22.66 16 5 N -0.63 -13.82 5.34 -429.55 -2.30 -16.11 16 6 C 0.14 3.90 6.29 38.10 0.24 4.14 16 7 C -0.09 -1.70 9.96 22.45 0.22 -1.48 16 8 C -0.09 -2.17 10.02 22.21 0.22 -1.95 16 9 C -0.09 -3.19 9.61 22.56 0.22 -2.97 16 10 C -0.11 -4.97 5.87 -20.11 -0.12 -5.09 16 11 C 0.43 24.99 7.83 70.32 0.55 25.54 16 12 O -0.59 -37.51 15.59 19.84 0.31 -37.20 16 13 O -0.23 -14.31 8.99 11.39 0.10 -14.20 16 14 C -0.43 -27.46 9.65 67.96 0.66 -26.80 16 15 H 0.08 5.14 6.86 -2.91 -0.02 5.12 16 16 C 0.00 0.09 5.50 84.89 0.47 0.55 16 17 N -0.89 -53.22 13.67 21.63 0.30 -52.92 16 18 Si 1.02 44.67 29.55 68.60 2.03 46.70 16 19 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 20 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 21 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 22 C -0.09 -3.55 8.23 22.67 0.19 -3.37 16 23 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.15 1.08 8.14 -2.38 -0.02 1.06 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.44 5.33 8.93 -92.71 -0.83 4.50 16 27 H 0.19 1.59 8.06 -2.91 -0.02 1.57 16 28 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 29 H 0.13 5.03 7.60 -2.91 -0.02 5.01 16 30 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 31 H 0.12 5.53 5.82 -2.91 -0.02 5.51 16 Total: -1.00 -88.77 288.83 5.43 -83.34 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.36 Total: 11.64 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 4.96 Total: 9.55 kcal Atomic # 7 Polarization: -67.04 SS G_CDS: -2.00 Total: -69.04 kcal Atomic # 8 Polarization: -82.28 SS G_CDS: 0.09 Total: -82.19 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -88.77 5.43 -83.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491033298.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.250 kcal (2) G-P(sol) polarization free energy of solvation -88.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds