Wall clock time and date at job start Mon Mar 30 2020 00:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36711 * 120.00161 * 2 1 4 4 H 1.07997 * 120.00061 * 205.62289 * 3 2 1 5 5 C 1.39123 * 119.99702 * 25.62378 * 3 2 1 6 6 N 1.31325 * 120.00144 * 11.36021 * 5 3 2 7 7 Si 1.86800 * 119.99907 * 191.35501 * 5 3 2 8 8 H 1.48496 * 109.47356 * 60.00034 * 7 5 3 9 9 H 1.48500 * 109.47156 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47337 * 299.99769 * 7 5 3 11 11 C 1.34775 * 119.99842 * 180.02562 * 2 1 3 12 12 O 1.21763 * 119.99875 * 179.97438 * 11 2 1 13 13 C 1.46229 * 120.00439 * 359.97438 * 11 2 1 14 14 C 1.34970 * 120.00396 * 179.97438 * 13 11 2 15 15 C 1.47150 * 120.00215 * 179.97438 * 14 13 11 16 16 C 1.39898 * 120.16609 * 0.02562 * 15 14 13 17 17 C 1.37859 * 119.85273 * 179.97438 * 16 15 14 18 18 C 1.38419 * 120.18656 * 359.97438 * 17 16 15 19 19 C 1.38502 * 120.33596 * 359.72877 * 18 17 16 20 20 Cl 1.73602 * 119.92666 * 180.30125 * 19 18 17 21 21 C 1.38021 * 120.15179 * 0.55232 * 19 18 17 22 22 H 1.09000 * 109.46498 * 264.92498 * 1 2 3 23 23 H 1.08997 * 109.47203 * 24.91996 * 1 2 3 24 24 H 1.08994 * 109.47255 * 144.92737 * 1 2 3 25 25 H 0.96995 * 119.99778 * 180.02562 * 6 5 3 26 26 H 1.08007 * 119.99611 * 0.02562 * 13 11 2 27 27 H 1.08006 * 119.99931 * 0.02562 * 14 13 11 28 28 H 1.08001 * 120.07297 * 359.97438 * 16 15 14 29 29 H 1.07995 * 119.90863 * 180.02562 * 17 16 15 30 30 H 1.07997 * 119.83192 * 180.02562 * 18 17 16 31 31 H 1.07999 * 120.10070 * 179.72424 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1486 1.1839 0.0000 4 1 3.1489 1.2299 -0.4045 5 6 1.5556 2.3295 0.5211 6 7 0.4414 2.2368 1.2101 7 14 2.3442 3.9995 0.2407 8 1 2.4266 4.2696 -1.2171 9 1 1.5232 5.0505 0.8938 10 1 3.7101 4.0060 0.8233 11 6 2.1388 -1.1672 -0.0005 12 8 3.3565 -1.1672 -0.0010 13 6 1.4078 -2.4336 -0.0005 14 6 2.0826 -3.6025 -0.0016 15 6 1.3469 -4.8769 -0.0010 16 6 -0.0521 -4.8810 0.0001 17 6 -0.7348 -6.0786 0.0001 18 6 -0.0401 -7.2758 -0.0015 19 6 1.3449 -7.2809 -0.0088 20 17 2.2055 -8.7885 -0.0187 21 6 2.0426 -6.0900 -0.0030 22 1 -0.3632 -0.0909 1.0237 23 1 -0.3633 0.9320 -0.4330 24 1 -0.3633 -0.8410 -0.5905 25 1 0.0278 3.0356 1.5730 26 1 0.3277 -2.4336 -0.0005 27 1 3.1627 -3.6025 -0.0020 28 1 -0.5960 -3.9479 0.0009 29 1 -1.8148 -6.0828 0.0005 30 1 -0.5807 -8.2107 -0.0019 31 1 3.1225 -6.0949 -0.0042 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491364824.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:20:39 Heat of formation + Delta-G solvation = -11.407276 kcal Electronic energy + Delta-G solvation = -16570.794662 eV Core-core repulsion = 13649.950780 eV Total energy + Delta-G solvation = -2920.843882 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.60049 -40.02426 -37.50793 -36.77485 -34.85655 -33.68721 -31.90064 -30.57658 -28.30352 -26.78105 -24.85062 -23.64339 -22.12429 -19.76072 -18.97272 -18.58053 -17.55043 -16.87903 -16.37298 -16.28644 -15.85412 -15.69292 -14.90496 -14.56415 -14.46906 -14.40047 -13.79430 -13.45334 -13.19864 -13.04492 -12.71934 -12.65664 -12.54875 -12.43935 -12.15113 -12.10263 -11.81961 -11.18593 -11.03509 -10.47303 -9.82528 -9.73097 -9.23772 -8.41288 -6.02479 -0.43940 0.22447 1.01688 1.11658 1.40408 1.44232 1.51235 2.25248 2.43333 2.80206 3.04312 3.15605 3.68109 3.81686 4.00100 4.19222 4.22123 4.28970 4.41590 4.64954 4.70119 4.90303 4.98558 5.07827 5.19789 5.31328 5.35399 5.37978 5.46141 5.63906 5.80457 6.07887 6.45805 7.11298 7.39183 7.99739 8.61205 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.050644 B = 0.003476 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.746056 B = 8053.265431 C = 8535.309436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.446 5.446 3 C -0.349 4.349 4 H 0.072 0.928 5 C 0.001 3.999 6 N -0.888 5.888 7 Si 0.993 3.007 8 H -0.265 1.265 9 H -0.266 1.266 10 H -0.277 1.277 11 C 0.448 3.552 12 O -0.646 6.646 13 C -0.172 4.172 14 C -0.058 4.058 15 C -0.057 4.057 16 C -0.109 4.109 17 C -0.099 4.099 18 C -0.106 4.106 19 C -0.044 4.044 20 Cl -0.070 7.070 21 C -0.106 4.106 22 H 0.047 0.953 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.278 0.722 26 H 0.152 0.848 27 H 0.114 0.886 28 H 0.145 0.855 29 H 0.168 0.832 30 H 0.158 0.842 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.344 -16.862 -2.272 18.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.162 5.162 3 C -0.477 4.477 4 H 0.090 0.910 5 C -0.202 4.202 6 N -0.525 5.525 7 Si 0.815 3.185 8 H -0.189 1.189 9 H -0.190 1.190 10 H -0.203 1.203 11 C 0.242 3.758 12 O -0.537 6.537 13 C -0.193 4.193 14 C -0.079 4.079 15 C -0.057 4.057 16 C -0.127 4.127 17 C -0.117 4.117 18 C -0.125 4.125 19 C -0.071 4.071 20 Cl -0.041 7.041 21 C -0.125 4.125 22 H 0.066 0.934 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.169 0.831 27 H 0.132 0.868 28 H 0.162 0.838 29 H 0.185 0.815 30 H 0.175 0.825 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.888 -16.791 -2.170 18.278 hybrid contribution 0.804 0.941 0.084 1.241 sum -6.084 -15.850 -2.086 17.105 Atomic orbital electron populations 1.21564 0.79035 1.01246 1.00890 1.43742 1.07080 1.04691 1.60684 1.19639 1.01381 0.86491 1.40201 0.91042 1.26193 0.96941 1.03161 0.93930 1.69992 1.19362 1.31484 1.31643 0.85013 0.78031 0.76363 0.79053 1.18945 1.19034 1.20264 1.18869 0.87452 0.85506 0.84020 1.90585 1.15869 1.88242 1.59027 1.23095 1.00996 0.91184 1.04001 1.22133 0.99464 0.90768 0.95524 1.18926 0.93969 0.91456 1.01385 1.21819 0.92681 1.00319 0.97903 1.21415 1.01885 0.90381 0.97979 1.21504 0.91352 1.00551 0.99052 1.20918 0.93330 0.86703 1.06127 1.98368 1.77371 1.31382 1.97019 1.21316 1.00847 0.90263 1.00100 0.93430 0.91995 0.91031 0.91240 0.83060 0.86790 0.83754 0.81451 0.82475 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.01 8.28 127.77 1.06 6.07 16 2 N -0.45 -23.66 3.00 -663.99 -1.99 -25.65 16 3 C -0.35 -20.20 9.21 84.15 0.77 -19.43 16 4 H 0.07 4.42 7.46 -2.91 -0.02 4.40 16 5 C 0.00 0.05 5.06 84.98 0.43 0.48 16 6 N -0.89 -46.50 10.83 21.69 0.24 -46.26 16 7 Si 0.99 42.12 29.57 68.60 2.03 44.15 16 8 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 9 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 10 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 11 C 0.45 23.19 7.55 86.32 0.65 23.85 16 12 O -0.65 -38.75 15.95 -4.55 -0.07 -38.82 16 13 C -0.17 -6.57 8.60 23.60 0.20 -6.37 16 14 C -0.06 -1.98 9.46 23.86 0.23 -1.75 16 15 C -0.06 -1.52 5.87 -20.15 -0.12 -1.64 16 16 C -0.11 -2.34 9.41 22.58 0.21 -2.13 16 17 C -0.10 -1.59 10.03 22.22 0.22 -1.37 16 18 C -0.11 -1.77 9.82 22.38 0.22 -1.55 16 19 C -0.04 -0.92 6.31 22.28 0.14 -0.78 16 20 Cl -0.07 -1.36 28.95 -2.72 -0.08 -1.44 16 21 C -0.11 -2.59 9.58 22.61 0.22 -2.38 16 22 H 0.05 2.09 7.85 -2.39 -0.02 2.07 16 23 H 0.06 2.84 6.79 -2.39 -0.02 2.82 16 24 H 0.07 2.43 6.39 -2.39 -0.02 2.41 16 25 H 0.28 13.52 8.31 -92.71 -0.77 12.75 16 26 H 0.15 4.63 4.33 -2.91 -0.01 4.62 16 27 H 0.11 4.30 7.52 -2.91 -0.02 4.28 16 28 H 0.14 2.75 6.17 -2.91 -0.02 2.73 16 29 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 30 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 31 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -69.21 287.79 5.51 -63.69 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 1.16 Total: 11.34 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 4.24 Total: -7.00 kcal Atomic # 7 Polarization: -70.16 SS G_CDS: -1.76 Total: -71.92 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -0.07 Total: -38.82 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.44 kcal Total: -69.21 5.51 -63.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491364824.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.286 kcal (2) G-P(sol) polarization free energy of solvation -69.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds