Wall clock time and date at job start Mon Mar 30 2020 00:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37101 * 120.00087 * 2 1 4 4 H 1.07997 * 119.99758 * 202.44568 * 3 2 1 5 5 C 1.38952 * 120.00200 * 22.43721 * 3 2 1 6 6 N 1.31407 * 119.99558 * 11.08863 * 5 3 2 7 7 Si 1.86799 * 120.00040 * 191.08403 * 5 3 2 8 8 H 1.48498 * 109.46944 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.47011 * 120.00359 * 7 5 3 10 10 H 1.48497 * 109.47198 * 240.00247 * 7 5 3 11 11 C 1.34773 * 119.99848 * 179.97438 * 2 1 3 12 12 O 1.21294 * 119.99972 * 180.02562 * 11 2 1 13 13 C 1.50697 * 120.00041 * 0.02562 * 11 2 1 14 14 H 1.09005 * 112.88553 * 308.32887 * 13 11 2 15 15 C 1.52262 * 113.59189 * 177.16381 * 13 11 2 16 16 C 1.50549 * 87.23572 * 245.41025 * 15 13 11 17 17 C 1.37749 * 92.76952 * 359.97438 * 16 15 13 18 18 C 1.38768 * 119.93790 * 179.97438 * 17 16 15 19 19 C 1.38125 * 120.12025 * 0.02562 * 18 17 16 20 20 C 1.38168 * 119.99218 * 359.97438 * 19 18 17 21 21 C 1.38228 * 119.97200 * 0.04372 * 20 19 18 22 22 Cl 1.73595 * 119.97075 * 179.97438 * 21 20 19 23 23 H 1.08999 * 109.47260 * 273.63490 * 1 2 3 24 24 H 1.09003 * 109.46910 * 33.63499 * 1 2 3 25 25 H 1.08995 * 109.47140 * 153.63245 * 1 2 3 26 26 H 0.97002 * 119.99779 * 179.97438 * 6 5 3 27 27 H 1.09000 * 113.59406 * 130.81695 * 15 13 11 28 28 H 1.09004 * 113.58285 * 359.97438 * 15 13 11 29 29 H 1.07995 * 119.94009 * 179.71872 * 18 17 16 30 30 H 1.07995 * 119.99871 * 180.02562 * 19 18 17 31 31 H 1.08000 * 120.01232 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1691 1.2227 -0.3571 5 6 1.5347 2.3452 0.4593 6 7 0.3853 2.2713 1.0919 7 14 2.3408 4.0065 0.1776 8 1 3.6194 3.8186 -0.5539 9 1 1.4342 4.8670 -0.6242 10 1 2.6094 4.6547 1.4863 11 6 2.1388 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3853 -2.4723 0.0005 14 1 0.6337 -2.5278 0.7880 15 6 2.2876 -3.6968 -0.0679 16 6 1.6831 -3.9765 -1.4181 17 6 0.8664 -2.8690 -1.3560 18 6 0.0073 -2.5822 -2.4074 19 6 -0.0307 -3.4056 -3.5157 20 6 0.7881 -4.5168 -3.5791 21 6 1.6442 -4.8042 -2.5326 22 17 2.6724 -6.2007 -2.6119 23 1 -0.3634 0.0652 1.0256 24 1 -0.3633 0.8557 -0.5692 25 1 -0.3633 -0.9207 -0.4564 26 1 -0.0444 3.0795 1.4128 27 1 2.0530 -4.4539 0.6804 28 1 3.3496 -3.4544 -0.1075 29 1 -0.6363 -1.7165 -2.3568 30 1 -0.6997 -3.1804 -4.3330 31 1 0.7583 -5.1610 -4.4454 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528319542.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:20:59 Heat of formation + Delta-G solvation = 12.857371 kcal Electronic energy + Delta-G solvation = -17525.059369 eV Core-core repulsion = 14605.267681 eV Total energy + Delta-G solvation = -2919.791688 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.12141 -39.79569 -37.56357 -36.87205 -36.04508 -33.65440 -31.53037 -29.01155 -28.24058 -26.93157 -25.46252 -23.18221 -21.93930 -20.16458 -18.95392 -18.33346 -17.79524 -16.90507 -16.69144 -15.97062 -15.87656 -15.71903 -15.09029 -14.24153 -14.16322 -14.09535 -13.72499 -13.36395 -13.19225 -13.04843 -12.87121 -12.68660 -12.42092 -12.34343 -12.33151 -12.11833 -11.74727 -11.66458 -11.05005 -10.61711 -9.73446 -9.62008 -9.60964 -8.34814 -6.01042 0.13645 0.22068 1.16534 1.34560 1.40683 1.54362 1.91234 2.25728 2.58656 2.96661 3.05214 3.22152 3.37959 3.58103 4.02184 4.04912 4.31471 4.32990 4.51508 4.59627 4.66980 4.80172 4.87662 5.02039 5.06215 5.17079 5.34743 5.38245 5.43043 5.58959 5.81991 6.06480 6.45072 7.13300 7.42778 7.98246 8.66457 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.034554 B = 0.005104 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.138624 B = 5484.611832 C = 5768.559004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.453 5.453 3 C -0.345 4.345 4 H 0.069 0.931 5 C 0.001 3.999 6 N -0.894 5.894 7 Si 0.989 3.011 8 H -0.276 1.276 9 H -0.264 1.264 10 H -0.274 1.274 11 C 0.451 3.549 12 O -0.630 6.630 13 C -0.057 4.057 14 H 0.130 0.870 15 C -0.051 4.051 16 C -0.127 4.127 17 C -0.116 4.116 18 C -0.096 4.096 19 C -0.099 4.099 20 C -0.107 4.107 21 C -0.023 4.023 22 Cl -0.076 7.076 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.275 0.725 27 H 0.122 0.878 28 H 0.086 0.914 29 H 0.136 0.864 30 H 0.173 0.827 31 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.795 -11.918 -7.480 15.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.171 5.171 3 C -0.473 4.473 4 H 0.087 0.913 5 C -0.201 4.201 6 N -0.532 5.532 7 Si 0.813 3.187 8 H -0.201 1.201 9 H -0.189 1.189 10 H -0.199 1.199 11 C 0.240 3.760 12 O -0.518 6.518 13 C -0.078 4.078 14 H 0.148 0.852 15 C -0.088 4.088 16 C -0.128 4.128 17 C -0.117 4.117 18 C -0.115 4.115 19 C -0.116 4.116 20 C -0.125 4.125 21 C -0.049 4.049 22 Cl -0.047 7.047 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.140 0.860 28 H 0.104 0.896 29 H 0.154 0.846 30 H 0.190 0.810 31 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.302 -11.876 -7.409 14.969 hybrid contribution 0.553 0.943 0.234 1.118 sum -4.750 -10.933 -7.176 13.914 Atomic orbital electron populations 1.21500 0.79180 0.99928 1.01438 1.43777 1.06847 1.04449 1.61994 1.19646 0.99198 0.85766 1.42671 0.91279 1.26064 0.96931 1.02727 0.94387 1.70065 1.17472 1.30457 1.35239 0.84941 0.78275 0.77220 0.78297 1.20066 1.18856 1.19941 1.20345 0.87529 0.85530 0.82595 1.90467 1.15923 1.87610 1.57753 1.21028 0.98064 0.92867 0.95837 0.85211 1.21369 1.00070 0.94975 0.92417 1.21747 0.98930 0.95638 0.96488 1.21535 0.97606 0.96332 0.96252 1.20957 0.97955 1.00330 0.92209 1.21334 0.99195 0.93216 0.97885 1.21276 0.94866 0.98800 0.97579 1.20618 0.97647 0.91009 0.95642 1.98344 1.67199 1.40736 1.98393 0.93262 0.92827 0.91529 0.91563 0.85955 0.89580 0.84613 0.80973 0.81782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.36 8.46 127.77 1.08 6.44 16 2 N -0.45 -23.62 3.02 -658.90 -1.99 -25.61 16 3 C -0.34 -19.80 9.29 84.04 0.78 -19.02 16 4 H 0.07 4.28 7.40 -2.91 -0.02 4.26 16 5 C 0.00 0.05 5.13 84.93 0.44 0.49 16 6 N -0.89 -46.79 10.58 21.66 0.23 -46.56 16 7 Si 0.99 42.40 29.57 68.60 2.03 44.43 16 8 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 9 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 10 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 11 C 0.45 22.57 7.15 87.66 0.63 23.20 16 12 O -0.63 -36.60 15.38 -3.07 -0.05 -36.64 16 13 C -0.06 -2.12 2.95 -12.76 -0.04 -2.16 16 14 H 0.13 4.22 7.94 -2.38 -0.02 4.20 16 15 C -0.05 -1.72 7.69 29.37 0.23 -1.49 16 16 C -0.13 -4.07 7.21 -20.06 -0.14 -4.22 16 17 C -0.12 -3.86 6.08 -20.08 -0.12 -3.98 16 18 C -0.10 -2.67 9.62 22.37 0.22 -2.45 16 19 C -0.10 -2.11 10.04 22.23 0.22 -1.89 16 20 C -0.11 -2.37 9.82 22.25 0.22 -2.15 16 21 C -0.02 -0.63 6.33 22.42 0.14 -0.48 16 22 Cl -0.08 -1.89 28.96 -2.72 -0.08 -1.97 16 23 H 0.05 2.24 7.46 -2.39 -0.02 2.22 16 24 H 0.05 2.46 7.15 -2.39 -0.02 2.44 16 25 H 0.07 2.37 4.61 -2.39 -0.01 2.36 16 26 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 27 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 28 H 0.09 3.34 7.02 -2.39 -0.02 3.32 16 29 H 0.14 3.46 7.22 -2.91 -0.02 3.44 16 30 H 0.17 2.35 8.06 -2.91 -0.02 2.32 16 31 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -68.04 279.97 4.95 -63.09 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 1.16 Total: 10.96 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 3.65 Total: -7.71 kcal Atomic # 7 Polarization: -70.41 SS G_CDS: -1.76 Total: -72.17 kcal Atomic # 8 Polarization: -36.60 SS G_CDS: -0.05 Total: -36.64 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -0.08 Total: -1.97 kcal Total: -68.04 4.95 -63.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528319542.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.951 kcal (2) G-P(sol) polarization free energy of solvation -68.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds