Wall clock time and date at job start Mon Mar 30 2020 00:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47589 * 2 1 4 4 C 1.53002 * 109.47519 * 240.00288 * 2 1 3 5 5 C 1.50703 * 109.47318 * 175.00350 * 4 2 1 6 6 H 1.07994 * 119.99656 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99656 * 179.97438 * 5 4 2 8 8 N 1.31507 * 120.00242 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99750 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47457 * 59.99930 * 9 7 5 11 11 H 1.48499 * 109.47203 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47178 * 300.00054 * 9 7 5 13 13 S 1.81404 * 109.47175 * 119.99973 * 2 1 3 14 14 C 1.76197 * 103.00043 * 289.23501 * 13 2 1 15 15 C 1.38920 * 120.16744 * 354.28814 * 14 13 2 16 16 C 1.38032 * 120.13361 * 180.02562 * 15 14 13 17 17 C 1.38492 * 120.46958 * 0.02562 * 16 15 14 18 18 C 1.38105 * 120.33567 * 359.97438 * 17 16 15 19 19 F 1.35104 * 120.07148 * 179.97438 * 18 17 16 20 20 C 1.39984 * 119.85699 * 0.25006 * 18 17 16 21 21 C 1.43198 * 120.23045 * 179.74412 * 20 18 17 22 22 N 5.45186 * 104.82438 * 117.09840 * 2 1 3 23 23 H 1.08998 * 109.47591 * 294.43502 * 1 2 3 24 24 H 1.09002 * 109.46838 * 54.43393 * 1 2 3 25 25 H 1.09001 * 109.47171 * 174.42962 * 1 2 3 26 26 H 1.09003 * 109.46425 * 294.99984 * 4 2 1 27 27 H 1.08998 * 109.47223 * 54.99757 * 4 2 1 28 28 H 0.97006 * 120.00035 * 179.97438 * 8 7 5 29 29 H 1.08009 * 119.93639 * 0.02562 * 15 14 13 30 30 H 1.07997 * 119.76435 * 180.02562 * 16 15 14 31 31 H 1.08005 * 119.83186 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5420 -0.6149 -1.3126 6 1 4.0789 -0.0855 -0.5395 7 6 4.2305 -1.1935 -2.3577 8 7 3.5766 -1.8385 -3.2989 9 14 6.0921 -1.0611 -2.4367 10 1 6.6846 -1.6862 -1.2270 11 1 6.5871 -1.7612 -3.6491 12 1 6.4845 0.3698 -2.4971 13 16 2.1346 -0.8551 1.4812 14 6 1.7335 0.2676 2.7785 15 6 1.2093 1.5193 2.4814 16 6 0.8958 2.3984 3.4983 17 6 1.1003 2.0436 4.8213 18 6 1.6203 0.8043 5.1388 19 9 1.8180 0.4639 6.4312 20 6 1.9476 -0.0963 4.1183 21 6 2.4924 -1.3814 4.4381 22 7 2.9248 -2.4008 4.6918 23 1 -0.3634 0.4251 0.9356 24 1 -0.3633 0.5977 -0.8360 25 1 -0.3633 -1.0228 -0.0998 26 1 1.7517 -1.7715 -1.2056 27 1 1.6054 -0.2617 -2.1370 28 1 4.0610 -2.2453 -4.0344 29 1 1.0467 1.8052 1.4526 30 1 0.4883 3.3699 3.2605 31 1 0.8509 2.7394 5.6089 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566497734.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:53 Heat of formation + Delta-G solvation = -4.144208 kcal Electronic energy + Delta-G solvation = -16738.448381 eV Core-core repulsion = 13832.335945 eV Total energy + Delta-G solvation = -2906.112436 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.14875 -39.10470 -36.33572 -34.85614 -32.33309 -31.56759 -30.69255 -27.61687 -24.34090 -23.46444 -23.03982 -20.93644 -19.15647 -17.82062 -16.72983 -16.44659 -15.91647 -15.78548 -15.42077 -14.71134 -14.50719 -13.76690 -13.75345 -13.27417 -13.14062 -12.93123 -12.66105 -12.25995 -12.07156 -12.00764 -11.78025 -11.66597 -11.00023 -10.98461 -10.63611 -10.53861 -9.84654 -9.67087 -9.51536 -9.27259 -8.97638 -8.47219 -7.17923 -6.12329 -4.15314 0.53342 0.92759 1.73277 2.68504 2.87063 2.90131 3.29528 3.34041 3.37743 3.65272 3.80851 4.03507 4.38312 4.62082 4.91035 5.04052 5.21987 5.25592 5.40641 5.48871 5.63931 5.74942 5.81162 5.87998 6.08870 6.12911 6.40742 6.47339 6.54292 7.35227 7.42295 7.57419 7.83544 8.17817 8.88642 9.49929 10.98584 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.023627 B = 0.005433 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.779957 B = 5152.331518 C = 5624.117365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.072 4.072 3 H 0.089 0.911 4 C 0.039 3.961 5 C -0.526 4.526 6 H 0.063 0.937 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.276 1.276 13 S -0.042 6.042 14 C -0.017 4.017 15 C -0.154 4.154 16 C -0.040 4.040 17 C -0.179 4.179 18 C 0.164 3.836 19 F -0.130 7.130 20 C -0.065 4.065 21 C 0.255 3.745 22 N -0.400 5.400 23 H 0.051 0.949 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.028 0.972 27 H 0.041 0.959 28 H 0.263 0.737 29 H 0.145 0.855 30 H 0.140 0.860 31 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.030 10.060 12.131 17.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.201 4.201 3 H 0.107 0.893 4 C 0.001 3.999 5 C -0.564 4.564 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.719 3.281 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.201 1.201 13 S 0.211 5.789 14 C -0.135 4.135 15 C -0.179 4.179 16 C -0.061 4.061 17 C -0.202 4.202 18 C 0.140 3.860 19 F -0.108 7.108 20 C -0.078 4.078 21 C -0.060 4.060 22 N -0.075 5.075 23 H 0.070 0.930 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.162 0.838 30 H 0.158 0.842 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.742 7.157 12.255 15.712 hybrid contribution 0.360 1.606 -0.081 1.647 sum -6.382 8.762 12.174 16.301 Atomic orbital electron populations 1.22200 0.94198 1.03131 1.01474 1.23930 0.97151 1.02590 0.96389 0.89256 1.19054 0.96669 0.95699 0.88485 1.21168 0.91334 1.35348 1.08568 0.91927 1.24962 0.98585 0.94940 0.95492 1.69929 1.35882 1.35354 1.12001 0.86646 0.85486 0.78357 0.77579 1.19995 1.21232 1.20110 1.86464 1.71150 1.24590 0.96667 1.22403 0.96499 0.98589 0.95974 1.21362 1.02797 0.92615 1.01081 1.21088 0.94745 0.99085 0.91198 1.20931 1.05630 0.95359 0.98276 1.17469 0.97989 0.93352 0.77158 1.91532 1.92495 1.92583 1.34225 1.15425 1.10842 0.89592 0.91892 1.25115 0.93989 0.92666 0.94264 1.81179 1.08778 1.10722 1.06861 0.92970 0.91487 0.91608 0.95379 0.94140 0.92723 0.83757 0.84227 0.83954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.72 37.15 0.32 -1.83 16 2 C -0.07 -1.29 1.98 -26.73 -0.05 -1.34 16 3 H 0.09 1.50 6.81 -51.92 -0.35 1.15 16 4 C 0.04 0.91 4.45 -27.88 -0.12 0.79 16 5 C -0.53 -13.84 8.53 -34.44 -0.29 -14.14 16 6 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -25.68 13.29 55.43 0.74 -24.95 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.24 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 S -0.04 -0.77 19.60 -107.50 -2.11 -2.88 16 14 C -0.02 -0.25 6.03 -38.49 -0.23 -0.48 16 15 C -0.15 -1.78 8.07 -39.40 -0.32 -2.10 16 16 C -0.04 -0.35 10.02 -39.56 -0.40 -0.75 16 17 C -0.18 -1.64 10.00 -39.54 -0.40 -2.04 16 18 C 0.16 1.98 7.28 -38.98 -0.28 1.70 16 19 F -0.13 -1.65 16.81 2.25 0.04 -1.61 16 20 C -0.06 -0.94 5.77 -106.48 -0.61 -1.56 16 21 C 0.26 4.34 13.93 -22.47 -0.31 4.03 16 22 N -0.40 -7.49 18.54 41.84 0.78 -6.72 16 23 H 0.05 0.63 6.20 -51.93 -0.32 0.31 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.14 1.58 5.00 -52.48 -0.26 1.32 16 30 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 291.93 15.07 4.40 4.40 Total: -1.00 -29.62 291.93 -6.98 -36.61 By element: Atomic # 1 Polarization: -2.00 SS G_CDS: -3.01 Total: -5.00 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -2.80 Total: -16.09 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 1.51 Total: -31.66 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -0.77 SS G_CDS: -2.11 Total: -2.88 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.62 -6.98 -36.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566497734.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.463 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds