Wall clock time and date at job start Mon Mar 30 2020 00:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36941 * 119.99697 * 2 1 4 4 H 1.08000 * 119.99528 * 162.84754 * 3 2 1 5 5 C 1.38810 * 120.00172 * 342.84858 * 3 2 1 6 6 N 1.31617 * 119.99962 * 343.74725 * 5 3 2 7 7 Si 1.86793 * 119.99921 * 163.74533 * 5 3 2 8 8 H 1.48497 * 109.47079 * 90.00054 * 7 5 3 9 9 H 1.48501 * 109.47268 * 209.99841 * 7 5 3 10 10 H 1.48499 * 109.47242 * 329.99939 * 7 5 3 11 11 C 1.46499 * 120.00155 * 180.27172 * 2 1 3 12 12 C 1.50698 * 109.47280 * 269.73318 * 11 2 1 13 13 C 1.34170 * 126.92054 * 90.02067 * 12 11 2 14 14 Cl 1.73603 * 124.93280 * 359.96192 * 13 12 11 15 15 O 1.34440 * 110.12430 * 179.97438 * 13 12 11 16 16 C 1.34839 * 110.89782 * 359.97438 * 15 13 12 17 17 C 1.38912 * 133.46954 * 179.97438 * 16 15 13 18 18 C 1.37877 * 119.82159 * 180.02562 * 17 16 15 19 19 C 1.38727 * 120.68538 * 0.02562 * 18 17 16 20 20 C 1.36752 * 120.41210 * 359.97438 * 19 18 17 21 21 C 1.39412 * 119.71822 * 359.72157 * 20 19 18 22 22 H 1.09001 * 109.46715 * 84.85082 * 1 2 3 23 23 H 1.09002 * 109.47316 * 204.84515 * 1 2 3 24 24 H 1.08995 * 109.47496 * 324.85127 * 1 2 3 25 25 H 0.97003 * 119.99974 * 180.02562 * 6 5 3 26 26 H 1.09002 * 109.46489 * 29.72950 * 11 2 1 27 27 H 1.08995 * 109.46796 * 149.72662 * 11 2 1 28 28 H 1.08001 * 120.08922 * 359.97438 * 17 16 15 29 29 H 1.08003 * 119.65581 * 179.97438 * 18 17 16 30 30 H 1.07998 * 119.79428 * 179.97438 * 19 18 17 31 31 H 1.08002 * 120.13990 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1936 1.2067 0.2758 5 6 1.5019 2.3614 -0.3545 6 7 0.3497 2.3122 -0.9887 7 14 2.2654 4.0128 0.0687 8 1 3.1429 4.4525 -1.0457 9 1 1.1907 5.0160 0.2779 10 1 3.0697 3.8827 1.3102 11 6 2.1975 -1.2687 -0.0060 12 6 2.4545 -1.7072 1.4127 13 6 1.6631 -2.4784 2.1738 14 17 0.1422 -3.1456 1.6686 15 8 2.2192 -2.6589 3.3844 16 6 3.4006 -2.0149 3.4719 17 6 4.3468 -1.8868 4.4809 18 6 5.4853 -1.1404 4.2625 19 6 5.6976 -0.5133 3.0435 20 6 4.7786 -0.6268 2.0372 21 6 3.6244 -1.3826 2.2374 22 1 -0.3633 0.0922 -1.0235 23 1 -0.3634 -0.9326 0.4318 24 1 -0.3634 0.8402 0.5916 25 1 -0.1028 3.1336 -1.2368 26 1 1.6063 -2.0271 -0.5193 27 1 3.1478 -1.1370 -0.5235 28 1 4.1906 -2.3699 5.4341 29 1 6.2190 -1.0423 5.0490 30 1 6.5944 0.0682 2.8882 31 1 4.9486 -0.1370 1.0897 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611255565.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:19:18 Heat of formation + Delta-G solvation = 39.896476 kcal Electronic energy + Delta-G solvation = -17713.095927 eV Core-core repulsion = 14794.476743 eV Total energy + Delta-G solvation = -2918.619185 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.46312 -38.85083 -38.11499 -37.57239 -34.51522 -32.68637 -31.39992 -30.27417 -28.14587 -27.47874 -24.29050 -23.53791 -23.18291 -21.02770 -18.78359 -18.58711 -17.99472 -17.50505 -16.84774 -16.75284 -15.51181 -15.25596 -15.18549 -14.94158 -14.61475 -14.33106 -13.58511 -13.49968 -13.23537 -12.93702 -12.83348 -12.76774 -12.58723 -12.46775 -12.15226 -11.96085 -11.90225 -11.68582 -10.85023 -10.61511 -9.60063 -9.11817 -8.85230 -7.81872 -5.25492 -0.12131 0.08410 0.38919 1.20799 1.45091 1.47279 1.56095 2.29120 2.52127 2.78375 3.30949 3.63883 3.74070 3.79888 3.96107 4.16886 4.35895 4.50784 4.56224 4.67020 4.81848 4.87388 5.00923 5.13707 5.31010 5.36261 5.44713 5.55442 5.60123 5.65106 5.72014 6.09439 6.29551 7.14131 7.84953 8.28060 9.22061 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.015966 B = 0.008753 C = 0.006062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.341190 B = 3198.244563 C = 4617.909167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.605 5.605 3 C -0.252 4.252 4 H 0.074 0.926 5 C -0.056 4.056 6 N -0.939 5.939 7 Si 0.962 3.038 8 H -0.281 1.281 9 H -0.296 1.296 10 H -0.273 1.273 11 C 0.212 3.788 12 C -0.142 4.142 13 C 0.041 3.959 14 Cl 0.036 6.964 15 O -0.202 6.202 16 C 0.036 3.964 17 C -0.113 4.113 18 C -0.079 4.079 19 C -0.133 4.133 20 C -0.077 4.077 21 C -0.138 4.138 22 H 0.006 0.994 23 H 0.033 0.967 24 H 0.014 0.986 25 H 0.247 0.753 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.158 0.842 29 H 0.178 0.822 30 H 0.159 0.841 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.746 -9.835 9.673 16.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.328 5.328 3 C -0.382 4.382 4 H 0.092 0.908 5 C -0.250 4.250 6 N -0.586 5.586 7 Si 0.790 3.210 8 H -0.208 1.208 9 H -0.223 1.223 10 H -0.198 1.198 11 C 0.085 3.915 12 C -0.147 4.147 13 C -0.033 4.033 14 Cl 0.065 6.935 15 O -0.106 6.106 16 C -0.011 4.011 17 C -0.132 4.132 18 C -0.097 4.097 19 C -0.151 4.151 20 C -0.095 4.095 21 C -0.139 4.139 22 H 0.024 0.976 23 H 0.051 0.949 24 H 0.033 0.967 25 H 0.056 0.944 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.175 0.825 29 H 0.196 0.804 30 H 0.177 0.823 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.374 -9.913 9.758 16.236 hybrid contribution -0.556 0.971 -0.270 1.151 sum 7.818 -8.942 9.489 15.202 Atomic orbital electron populations 1.20610 0.82450 0.96135 0.97592 1.44123 1.02090 1.01075 1.85465 1.19502 0.95499 0.85404 1.37819 0.90789 1.25626 0.98382 1.01238 0.99763 1.70277 1.18888 1.26600 1.42875 0.85344 0.77241 0.80074 0.78292 1.20764 1.22262 1.19770 1.19231 0.96819 0.87601 0.87843 1.22257 0.93358 0.98357 1.00740 1.22018 0.91834 1.04015 0.85396 1.98399 1.23926 1.84342 1.86825 1.83754 1.31306 1.63237 1.32340 1.20059 0.86224 0.97325 0.97474 1.20365 0.92122 1.03145 0.97535 1.21431 0.96003 0.94295 0.97961 1.21196 1.00045 1.00882 0.92983 1.20564 0.91933 0.96148 1.00825 1.19927 0.97019 1.02909 0.94092 0.97613 0.94894 0.96728 0.94383 0.91504 0.91731 0.82477 0.80437 0.82331 0.85890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.06 8.97 127.77 1.15 10.20 16 2 N -0.61 -30.91 2.91 -731.32 -2.13 -33.04 16 3 C -0.25 -13.88 9.69 84.03 0.81 -13.07 16 4 H 0.07 3.91 7.71 -2.91 -0.02 3.89 16 5 C -0.06 -3.16 5.05 84.86 0.43 -2.73 16 6 N -0.94 -56.26 10.56 21.65 0.23 -56.03 16 7 Si 0.96 45.52 29.58 68.60 2.03 47.55 16 8 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 9 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 C 0.21 8.92 5.98 85.63 0.51 9.43 16 12 C -0.14 -5.60 5.94 -18.56 -0.11 -5.71 16 13 C 0.04 1.53 7.83 66.89 0.52 2.06 16 14 Cl 0.04 1.16 27.22 -2.72 -0.07 1.09 16 15 O -0.20 -7.27 10.58 -9.15 -0.10 -7.37 16 16 C 0.04 1.20 7.41 22.98 0.17 1.37 16 17 C -0.11 -2.76 10.07 22.35 0.23 -2.54 16 18 C -0.08 -1.58 10.01 22.30 0.22 -1.35 16 19 C -0.13 -3.12 9.98 22.04 0.22 -2.90 16 20 C -0.08 -2.44 10.05 22.20 0.22 -2.22 16 21 C -0.14 -5.07 6.38 -20.21 -0.13 -5.20 16 22 H 0.01 0.31 7.48 -2.39 -0.02 0.29 16 23 H 0.03 1.45 6.37 -2.39 -0.02 1.43 16 24 H 0.01 0.80 7.03 -2.39 -0.02 0.78 16 25 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 26 H 0.07 2.60 7.79 -2.39 -0.02 2.58 16 27 H 0.06 2.65 8.04 -2.39 -0.02 2.63 16 28 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 29 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 30 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 31 H 0.12 4.01 7.89 -2.91 -0.02 3.98 16 Total: -1.00 -66.60 284.36 5.35 -61.25 By element: Atomic # 1 Polarization: -1.94 SS G_CDS: 1.15 Total: -0.80 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 4.25 Total: -12.64 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -1.90 Total: -89.07 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.10 Total: -7.37 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 17 Polarization: 1.16 SS G_CDS: -0.07 Total: 1.09 kcal Total: -66.60 5.35 -61.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611255565.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.144 kcal (2) G-P(sol) polarization free energy of solvation -66.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds