Wall clock time and date at job start Mon Mar 30 2020 00:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34651 * 116.99981 * 2 1 4 4 O 1.21517 * 120.00088 * 359.97438 * 3 2 1 5 5 N 1.34781 * 120.00014 * 179.97438 * 3 2 1 6 6 C 1.39983 * 119.99668 * 175.41486 * 5 3 2 7 7 C 1.38939 * 120.00822 * 215.10302 * 6 5 3 8 8 C 1.38002 * 119.99527 * 180.02562 * 7 6 5 9 9 C 1.38871 * 120.00848 * 0.02699 * 8 7 6 10 10 O 1.35862 * 119.99645 * 179.97438 * 9 8 7 11 11 C 1.34932 * 118.00305 * 75.11655 * 10 9 8 12 12 O 1.21663 * 119.99761 * 355.01119 * 11 10 9 13 13 C 1.41771 * 120.00069 * 175.00961 * 11 10 9 14 14 H 1.08000 * 119.99966 * 0.02562 * 13 11 10 15 15 C 1.40169 * 119.99920 * 180.02562 * 13 11 10 16 16 N 1.30624 * 119.99686 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99880 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47031 * 60.00006 * 17 15 13 19 19 H 1.48502 * 109.46973 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47397 * 299.99673 * 17 15 13 21 21 C 1.38876 * 120.01520 * 0.24882 * 9 8 7 22 22 C 1.38012 * 120.00329 * 359.45090 * 21 9 8 23 23 H 1.09002 * 109.46758 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46930 * 299.99934 * 1 2 3 25 25 H 1.09001 * 109.47209 * 59.99843 * 1 2 3 26 26 H 0.96993 * 120.00544 * 355.41211 * 5 3 2 27 27 H 1.08007 * 120.00467 * 0.02562 * 7 6 5 28 28 H 1.08001 * 120.00108 * 180.02562 * 8 7 6 29 29 H 0.96998 * 119.99439 * 179.97438 * 16 15 13 30 30 H 1.07998 * 119.99387 * 179.70933 * 21 9 8 31 31 H 1.08001 * 119.99884 * 180.27101 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1998 0.0000 4 8 1.4015 2.2189 -0.0005 5 7 3.4092 1.2703 0.0005 6 6 4.0449 2.5137 -0.0964 7 6 5.2406 2.6303 -0.7944 8 6 5.8673 3.8562 -0.8893 9 6 5.3033 4.9730 -0.2868 10 8 5.9208 6.1796 -0.3800 11 6 5.8470 6.8401 -1.5543 12 8 5.3195 6.3138 -2.5160 13 6 6.3839 8.1473 -1.6673 14 1 6.8525 8.6143 -0.8137 15 6 6.3067 8.8336 -2.8871 16 7 5.7404 8.2685 -3.9197 17 14 7.0136 10.5563 -3.0359 18 1 8.4673 10.5225 -2.7346 19 1 6.8065 11.0586 -4.4179 20 1 6.3294 11.4569 -2.0736 21 6 4.1112 4.8558 0.4158 22 6 3.4807 3.6314 0.5059 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 3.9374 0.4596 0.0681 27 1 5.6796 1.7617 -1.2626 28 1 6.7965 3.9470 -1.4322 29 1 5.6867 8.7436 -4.7636 30 1 3.6753 5.7237 0.8882 31 1 2.5513 3.5412 1.0486 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772221589.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:05 Heat of formation + Delta-G solvation = -153.888171 kcal Electronic energy + Delta-G solvation = -19089.784054 eV Core-core repulsion = 15722.052572 eV Total energy + Delta-G solvation = -3367.731482 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.06485 -41.25843 -39.59435 -37.74211 -36.97052 -35.64337 -34.82619 -32.09401 -30.54531 -29.14572 -28.11854 -24.79048 -24.03607 -22.98134 -21.90882 -20.09428 -19.54378 -18.82317 -18.50172 -17.74285 -17.54205 -17.26257 -16.77465 -16.02126 -15.46820 -15.15037 -15.06153 -14.71552 -14.63077 -14.30356 -13.93000 -13.61455 -13.31283 -13.02708 -12.91890 -12.77696 -12.49946 -12.05469 -11.88285 -11.81604 -11.67334 -11.14443 -10.98218 -10.47729 -10.03319 -9.11857 -8.58467 -7.30825 0.03290 0.31519 0.96757 1.38081 1.38657 1.53643 1.57579 2.12623 2.15469 2.50346 3.07856 3.14556 3.32084 3.83356 3.90279 4.25906 4.30281 4.35313 4.35961 4.46719 4.67690 4.78273 4.93574 5.07948 5.09385 5.16320 5.32587 5.49397 5.66661 5.82849 6.19056 6.24900 6.53521 6.61258 7.10760 8.11321 8.36521 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.044473 B = 0.003805 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.450938 B = 7356.191710 C = 7536.654419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.363 6.363 3 C 0.644 3.356 4 O -0.588 6.588 5 N -0.629 5.629 6 C 0.137 3.863 7 C -0.105 4.105 8 C -0.125 4.125 9 C 0.078 3.922 10 O -0.345 6.345 11 C 0.463 3.537 12 O -0.595 6.595 13 C -0.534 4.534 14 H 0.097 0.903 15 C 0.029 3.971 16 N -0.792 5.792 17 Si 1.019 2.981 18 H -0.248 1.248 19 H -0.263 1.263 20 H -0.250 1.250 21 C -0.130 4.130 22 C -0.105 4.105 23 H 0.143 0.857 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.436 0.564 27 H 0.171 0.829 28 H 0.123 0.877 29 H 0.289 0.711 30 H 0.130 0.870 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.431 -14.160 7.239 16.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.276 6.276 3 C 0.399 3.601 4 O -0.478 6.478 5 N -0.283 5.283 6 C 0.044 3.956 7 C -0.125 4.125 8 C -0.144 4.144 9 C 0.035 3.965 10 O -0.264 6.264 11 C 0.328 3.672 12 O -0.494 6.494 13 C -0.565 4.565 14 H 0.115 0.885 15 C -0.190 4.190 16 N -0.420 5.420 17 Si 0.835 3.165 18 H -0.172 1.172 19 H -0.187 1.187 20 H -0.174 1.174 21 C -0.149 4.149 22 C -0.125 4.125 23 H 0.161 0.839 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.276 0.724 27 H 0.189 0.811 28 H 0.141 0.859 29 H 0.099 0.901 30 H 0.148 0.852 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.096 -14.003 6.771 16.368 hybrid contribution 0.174 0.366 -0.233 0.467 sum -4.923 -13.637 6.539 15.904 Atomic orbital electron populations 1.23602 0.72233 1.06045 1.02756 1.86258 1.26115 1.28764 1.86430 1.18283 0.83367 0.82705 0.75788 1.91024 1.65247 1.35988 1.55580 1.41632 1.03147 1.08847 1.74684 1.17383 0.94097 0.84771 0.99342 1.20913 0.95148 0.97964 0.98506 1.21280 1.01169 0.92447 0.99530 1.19168 0.93206 0.85388 0.98752 1.84599 1.70335 1.30317 1.41180 1.20493 0.80732 0.87382 0.78618 1.90669 1.50464 1.69661 1.38577 1.20182 1.39318 0.97035 0.99935 0.88517 1.27280 0.93055 1.05454 0.93210 1.70127 1.30099 1.39501 1.02270 0.84756 0.79707 0.73073 0.78925 1.17170 1.18724 1.17406 1.21187 0.93100 0.98983 1.01640 1.21096 1.00404 0.91117 0.99867 0.83892 0.91663 0.92305 0.72418 0.81133 0.85872 0.90074 0.85220 0.83699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.68 10.56 113.37 1.20 1.88 16 2 O -0.36 -7.35 10.62 -55.60 -0.59 -7.94 16 3 C 0.64 17.30 8.59 129.79 1.12 18.41 16 4 O -0.59 -20.37 13.57 19.79 0.27 -20.10 16 5 N -0.63 -14.89 5.34 -429.30 -2.29 -17.18 16 6 C 0.14 4.30 6.30 38.17 0.24 4.54 16 7 C -0.11 -3.30 9.96 22.38 0.22 -3.08 16 8 C -0.13 -5.15 9.53 22.37 0.21 -4.94 16 9 C 0.08 3.70 5.27 22.57 0.12 3.82 16 10 O -0.35 -19.05 9.95 -1.49 -0.01 -19.06 16 11 C 0.46 28.78 7.61 68.69 0.52 29.30 16 12 O -0.60 -40.53 14.46 19.30 0.28 -40.25 16 13 C -0.53 -31.21 9.46 23.61 0.22 -30.99 16 14 H 0.10 5.16 7.85 -2.91 -0.02 5.14 16 15 C 0.03 1.56 5.50 85.34 0.47 2.03 16 16 N -0.79 -46.76 11.73 21.86 0.26 -46.50 16 17 Si 1.02 39.08 29.56 68.60 2.03 41.11 16 18 H -0.25 -8.89 7.11 99.48 0.71 -8.19 16 19 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 20 H -0.25 -9.07 7.11 99.48 0.71 -8.36 16 21 C -0.13 -5.49 9.98 22.37 0.22 -5.26 16 22 C -0.10 -3.81 8.69 22.38 0.19 -3.61 16 23 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.44 6.58 8.93 -92.71 -0.83 5.75 16 27 H 0.17 3.75 8.06 -2.91 -0.02 3.73 16 28 H 0.12 5.11 8.06 -2.91 -0.02 5.09 16 29 H 0.29 15.07 8.29 -92.71 -0.77 14.30 16 30 H 0.13 5.26 8.06 -2.91 -0.02 5.23 16 31 H 0.15 5.09 6.22 -2.91 -0.02 5.07 16 Total: -1.00 -81.07 287.88 5.03 -76.04 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.35 Total: 21.79 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 4.74 Total: 12.10 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: -2.04 Total: -63.68 kcal Atomic # 8 Polarization: -87.30 SS G_CDS: -0.06 Total: -87.36 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -81.07 5.03 -76.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772221589.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.851 kcal (2) G-P(sol) polarization free energy of solvation -81.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds