Wall clock time and date at job start Mon Mar 30 2020 00:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46904 * 109.47202 * 2 1 4 4 C 1.46894 * 110.99910 * 195.28440 * 3 2 1 5 5 C 1.50695 * 109.47509 * 66.04800 * 4 3 2 6 6 H 1.08004 * 119.99726 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00382 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99595 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00259 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47528 * 270.00341 * 9 7 5 11 11 H 1.48507 * 109.47121 * 30.00346 * 9 7 5 12 12 H 1.48498 * 109.47096 * 150.00083 * 9 7 5 13 13 C 1.46903 * 110.99925 * 71.32655 * 3 2 1 14 14 C 1.52998 * 109.47145 * 200.08379 * 13 3 2 15 15 C 1.53005 * 115.54938 * 34.35103 * 14 13 3 16 16 C 1.53002 * 117.49768 * 248.64252 * 14 13 3 17 17 C 1.52998 * 59.99953 * 252.50878 * 16 14 13 18 18 Cl 1.80299 * 117.50292 * 252.51077 * 17 16 14 19 19 Cl 1.80299 * 117.51858 * 107.47807 * 17 16 14 20 20 H 1.08998 * 109.47118 * 60.64785 * 1 2 3 21 21 H 1.08995 * 109.47201 * 180.64651 * 1 2 3 22 22 H 1.09004 * 109.46864 * 300.65049 * 1 2 3 23 23 H 1.08998 * 109.47129 * 240.00475 * 2 1 3 24 24 H 1.08996 * 109.47095 * 119.99698 * 2 1 3 25 25 H 1.08998 * 109.47014 * 306.04270 * 4 3 2 26 26 H 1.09005 * 109.46877 * 186.04743 * 4 3 2 27 27 H 0.97008 * 120.00111 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.47138 * 320.08388 * 13 3 2 29 29 H 1.09000 * 109.46689 * 80.08295 * 13 3 2 30 30 H 1.08998 * 109.47368 * 65.01018 * 15 14 13 31 31 H 1.08996 * 109.46811 * 185.01095 * 15 14 13 32 32 H 1.09008 * 109.46858 * 305.00687 * 15 14 13 33 33 H 1.08997 * 117.50040 * 0.02562 * 16 14 13 34 34 H 1.09006 * 117.49589 * 145.01861 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4424 1.4403 -0.3615 5 6 3.6148 0.9992 -1.7921 6 1 2.7536 0.7066 -2.3744 7 6 4.8719 0.9692 -2.3576 8 7 5.9206 1.3250 -1.6484 9 14 5.0856 0.4217 -4.1307 10 1 5.3031 -1.0467 -4.1727 11 1 3.8653 0.7637 -4.9049 12 1 6.2582 1.1130 -4.7243 13 6 1.7812 2.0277 1.2993 14 6 1.8242 3.5479 1.1318 15 6 1.2847 4.0809 -0.1971 16 6 2.9963 4.2961 1.7700 17 6 1.5973 4.4028 2.3802 18 17 0.7152 5.9616 2.1727 19 17 1.2991 3.5417 3.9359 20 1 -0.3633 0.5037 -0.8957 21 1 -0.3633 -1.0275 0.0116 22 1 -0.3633 0.5239 0.8841 23 1 1.8934 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 4.0097 0.7791 0.2935 26 1 3.8062 2.4618 -0.2499 27 1 6.8051 1.3043 -2.0463 28 1 0.8027 1.7313 1.6771 29 1 2.5522 1.7179 2.0048 30 1 0.2183 3.8667 -0.2685 31 1 1.4430 5.1581 -0.2476 32 1 1.8085 3.5976 -1.0219 33 1 3.7370 3.7053 2.3088 34 1 3.3835 5.1682 1.2430 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827969740.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:08 Heat of formation + Delta-G solvation = 8.137667 kcal Electronic energy + Delta-G solvation = -16635.287620 eV Core-core repulsion = 13848.691515 eV Total energy + Delta-G solvation = -2786.596105 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 265.070 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.81308 -36.54881 -35.87862 -35.17400 -32.65215 -30.10784 -28.29811 -27.39944 -24.78249 -22.51737 -22.00373 -20.36075 -18.64360 -16.46480 -16.08918 -15.27805 -14.85433 -14.23900 -13.95927 -13.46223 -13.09087 -12.78786 -12.59958 -12.44984 -12.13912 -11.68247 -11.52348 -11.26196 -11.19846 -11.16700 -11.05936 -10.93555 -10.74245 -10.59901 -10.52198 -10.22241 -9.95234 -9.60435 -9.44034 -9.13067 -8.46409 -7.30592 -6.05842 -4.06897 1.30026 2.37051 3.29427 3.36412 3.39814 3.42717 4.30094 4.42078 4.56271 4.99985 5.29005 5.31250 5.42866 5.67928 5.78812 5.87904 5.94216 5.98604 6.08806 6.15082 6.31923 6.36748 6.41960 6.68452 6.77372 6.90083 7.27295 7.32716 7.77118 8.05354 8.16658 8.50496 9.01169 9.57585 11.04819 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.023930 B = 0.005762 C = 0.005311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.785554 B = 4858.489309 C = 5270.451841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.057 3.943 3 N -0.530 5.530 4 C 0.192 3.808 5 C -0.507 4.507 6 H 0.064 0.936 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.273 1.273 12 H -0.287 1.287 13 C 0.085 3.915 14 C -0.056 4.056 15 C -0.107 4.107 16 C -0.138 4.138 17 C -0.001 4.001 18 Cl -0.107 7.107 19 Cl -0.109 7.109 20 H 0.059 0.941 21 H 0.047 0.953 22 H 0.045 0.955 23 H 0.087 0.913 24 H 0.017 0.983 25 H -0.012 1.012 26 H 0.035 0.965 27 H 0.261 0.739 28 H 0.074 0.926 29 H 0.035 0.965 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.099 0.901 33 H 0.117 0.883 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.823 4.745 7.451 12.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.071 4.071 3 N -0.254 5.254 4 C 0.067 3.933 5 C -0.546 4.546 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.198 1.198 12 H -0.213 1.213 13 C -0.044 4.044 14 C -0.058 4.058 15 C -0.164 4.164 16 C -0.175 4.175 17 C -0.053 4.053 18 Cl -0.080 7.080 19 Cl -0.082 7.082 20 H 0.078 0.922 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.106 0.894 24 H 0.036 0.964 25 H 0.006 0.994 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.117 0.883 33 H 0.135 0.865 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.984 5.076 7.187 12.575 hybrid contribution 0.692 -0.568 0.010 0.895 sum -8.293 4.508 7.197 11.870 Atomic orbital electron populations 1.21825 0.96627 1.00204 1.01653 1.21956 0.94037 0.90100 1.01029 1.62069 1.22532 1.15752 1.25074 1.19767 0.80607 0.97063 0.95820 1.21155 0.92727 1.43928 0.96797 0.91831 1.24966 0.95946 0.95599 0.97968 1.69952 0.98708 1.48425 1.36592 0.86548 0.77707 0.78573 0.84888 1.20816 1.19771 1.21320 1.21616 1.00703 0.89544 0.92487 1.22409 0.97290 0.94780 0.91279 1.21310 1.01297 0.99212 0.94615 1.24154 0.89674 1.03499 1.00218 1.27367 1.01519 0.88542 0.87839 1.98713 1.79068 1.33534 1.96700 1.98719 1.96714 1.77371 1.35436 0.92198 0.93421 0.93637 0.89448 0.96447 0.99384 0.94745 0.92962 0.90755 0.94672 0.92037 0.93170 0.88268 0.86495 0.86418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.98 37.16 0.37 -1.80 16 2 C 0.06 1.04 5.52 -3.82 -0.02 1.02 16 3 N -0.53 -10.44 3.24 -236.07 -0.77 -11.20 16 4 C 0.19 4.65 4.21 -4.98 -0.02 4.63 16 5 C -0.51 -13.44 8.29 -34.44 -0.29 -13.72 16 6 H 0.06 1.67 7.25 -52.48 -0.38 1.29 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -25.67 13.29 55.43 0.74 -24.93 16 9 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.09 1.45 4.01 -3.82 -0.02 1.43 16 14 C -0.06 -0.87 1.80 -154.51 -0.28 -1.15 16 15 C -0.11 -1.68 8.71 37.16 0.32 -1.36 16 16 C -0.14 -2.01 9.37 -26.73 -0.25 -2.26 16 17 C 0.00 -0.01 3.61 -26.73 -0.10 -0.11 16 18 Cl -0.11 -1.43 27.80 -51.86 -1.44 -2.87 16 19 Cl -0.11 -1.51 28.32 -51.86 -1.47 -2.98 16 20 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.04 0.64 6.48 -51.93 -0.34 0.31 16 23 H 0.09 1.77 6.59 -51.93 -0.34 1.43 16 24 H 0.02 0.31 8.06 -51.93 -0.42 -0.10 16 25 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 26 H 0.03 0.88 7.30 -51.93 -0.38 0.50 16 27 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.07 1.18 6.19 -51.93 -0.32 0.86 16 29 H 0.04 0.63 7.75 -51.93 -0.40 0.22 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.72 7.24 -51.93 -0.38 0.34 16 32 H 0.10 1.83 7.16 -51.92 -0.37 1.46 16 33 H 0.12 1.71 8.05 -51.93 -0.42 1.30 16 34 H 0.12 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 305.54 15.07 4.60 4.60 Total: -1.00 -26.96 305.54 -8.72 -35.68 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -4.99 Total: -2.38 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -0.37 Total: -11.88 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: -0.03 Total: -36.14 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 17 Polarization: -2.94 SS G_CDS: -2.91 Total: -5.85 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.96 -8.72 -35.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827969740.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.819 kcal (2) G-P(sol) polarization free energy of solvation -26.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds