Wall clock time and date at job start Mon Mar 30 2020 00:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46904 * 109.47202 * 2 1 4 4 C 1.46894 * 110.99910 * 195.28440 * 3 2 1 5 5 C 1.50695 * 109.47509 * 66.04800 * 4 3 2 6 6 H 1.08004 * 119.99726 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00382 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99595 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00259 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47528 * 270.00341 * 9 7 5 11 11 H 1.48507 * 109.47121 * 30.00346 * 9 7 5 12 12 H 1.48498 * 109.47096 * 150.00083 * 9 7 5 13 13 C 1.46903 * 110.99925 * 71.32655 * 3 2 1 14 14 C 1.52998 * 109.47145 * 200.08379 * 13 3 2 15 15 C 1.53005 * 115.54938 * 34.35103 * 14 13 3 16 16 C 1.53002 * 117.49768 * 248.64252 * 14 13 3 17 17 C 1.52998 * 59.99953 * 252.50878 * 16 14 13 18 18 Cl 1.80299 * 117.50292 * 252.51077 * 17 16 14 19 19 Cl 1.80299 * 117.51858 * 107.47807 * 17 16 14 20 20 H 1.08998 * 109.47118 * 60.64785 * 1 2 3 21 21 H 1.08995 * 109.47201 * 180.64651 * 1 2 3 22 22 H 1.09004 * 109.46864 * 300.65049 * 1 2 3 23 23 H 1.08998 * 109.47129 * 240.00475 * 2 1 3 24 24 H 1.08996 * 109.47095 * 119.99698 * 2 1 3 25 25 H 1.08998 * 109.47014 * 306.04270 * 4 3 2 26 26 H 1.09005 * 109.46877 * 186.04743 * 4 3 2 27 27 H 0.97008 * 120.00111 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.47138 * 320.08388 * 13 3 2 29 29 H 1.09000 * 109.46689 * 80.08295 * 13 3 2 30 30 H 1.08998 * 109.47368 * 65.01018 * 15 14 13 31 31 H 1.08996 * 109.46811 * 185.01095 * 15 14 13 32 32 H 1.09008 * 109.46858 * 305.00687 * 15 14 13 33 33 H 1.08997 * 117.50040 * 0.02562 * 16 14 13 34 34 H 1.09006 * 117.49589 * 145.01861 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4424 1.4403 -0.3615 5 6 3.6148 0.9992 -1.7921 6 1 2.7536 0.7066 -2.3744 7 6 4.8719 0.9692 -2.3576 8 7 5.9206 1.3250 -1.6484 9 14 5.0856 0.4217 -4.1307 10 1 5.3031 -1.0467 -4.1727 11 1 3.8653 0.7637 -4.9049 12 1 6.2582 1.1130 -4.7243 13 6 1.7812 2.0277 1.2993 14 6 1.8242 3.5479 1.1318 15 6 1.2847 4.0809 -0.1971 16 6 2.9963 4.2961 1.7700 17 6 1.5973 4.4028 2.3802 18 17 0.7152 5.9616 2.1727 19 17 1.2991 3.5417 3.9359 20 1 -0.3633 0.5037 -0.8957 21 1 -0.3633 -1.0275 0.0116 22 1 -0.3633 0.5239 0.8841 23 1 1.8934 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 4.0097 0.7791 0.2935 26 1 3.8062 2.4618 -0.2499 27 1 6.8051 1.3043 -2.0463 28 1 0.8027 1.7313 1.6771 29 1 2.5522 1.7179 2.0048 30 1 0.2183 3.8667 -0.2685 31 1 1.4430 5.1581 -0.2476 32 1 1.8085 3.5976 -1.0219 33 1 3.7370 3.7053 2.3088 34 1 3.3835 5.1682 1.2430 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827969740.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:07 Heat of formation + Delta-G solvation = -5.264744 kcal Electronic energy + Delta-G solvation = -16635.868792 eV Core-core repulsion = 13848.691515 eV Total energy + Delta-G solvation = -2787.177277 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 265.070 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.13248 -37.95668 -37.00908 -36.43312 -34.67167 -31.57940 -29.79506 -28.94882 -26.43788 -24.19947 -23.26344 -21.88660 -19.98212 -18.47211 -17.39285 -16.72722 -16.53567 -15.76964 -15.54425 -14.85102 -14.43288 -14.18710 -14.08373 -13.92732 -13.75976 -12.99024 -12.93193 -12.76944 -12.63192 -12.54352 -12.42034 -12.38004 -12.26060 -12.17314 -11.83961 -11.72580 -11.62156 -11.20444 -10.88313 -10.56111 -10.53217 -8.97010 -8.14918 -6.22737 0.14608 1.22463 1.43791 1.44851 1.55670 2.20449 2.44121 3.06312 3.18602 3.32732 3.57155 3.97229 4.13902 4.29151 4.52882 4.59739 4.63505 4.66215 4.78755 4.84907 5.05228 5.08871 5.11564 5.21715 5.25105 5.42643 5.50381 5.57254 5.72430 6.13038 6.40511 6.68340 6.93987 7.46367 8.95694 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.023930 B = 0.005762 C = 0.005311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.785554 B = 4858.489309 C = 5270.451841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.053 3.947 3 N -0.529 5.529 4 C 0.212 3.788 5 C -0.516 4.516 6 H 0.062 0.938 7 C 0.005 3.995 8 N -0.932 5.932 9 Si 0.960 3.040 10 H -0.277 1.277 11 H -0.265 1.265 12 H -0.285 1.285 13 C 0.090 3.910 14 C -0.071 4.071 15 C -0.098 4.098 16 C -0.142 4.142 17 C 0.014 3.986 18 Cl -0.094 7.094 19 Cl -0.103 7.103 20 H 0.056 0.944 21 H 0.069 0.931 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.017 0.983 25 H -0.046 1.046 26 H 0.018 0.982 27 H 0.262 0.738 28 H 0.090 0.910 29 H 0.025 0.975 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.113 0.887 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.219 4.986 7.357 13.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.075 4.075 3 N -0.253 5.253 4 C 0.086 3.914 5 C -0.555 4.555 6 H 0.081 0.919 7 C -0.193 4.193 8 N -0.573 5.573 9 Si 0.785 3.215 10 H -0.203 1.203 11 H -0.189 1.189 12 H -0.211 1.211 13 C -0.039 4.039 14 C -0.073 4.073 15 C -0.155 4.155 16 C -0.179 4.179 17 C -0.038 4.038 18 Cl -0.067 7.067 19 Cl -0.076 7.076 20 H 0.075 0.925 21 H 0.088 0.912 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.035 0.965 25 H -0.028 1.028 26 H 0.036 0.964 27 H 0.071 0.929 28 H 0.108 0.892 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.131 0.869 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.407 5.314 7.100 13.673 hybrid contribution 1.088 -0.637 0.105 1.265 sum -9.319 4.677 7.206 12.674 Atomic orbital electron populations 1.21719 0.93414 1.01883 1.02040 1.22015 0.96593 0.89017 0.99849 1.62026 1.19398 1.16863 1.26988 1.19371 0.82847 0.94921 0.94278 1.21459 0.92755 1.43426 0.97840 0.91947 1.25783 0.95716 0.95715 1.02070 1.70073 0.99129 1.49676 1.38392 0.85521 0.77767 0.78184 0.79982 1.20272 1.18924 1.21109 1.21612 1.01061 0.90414 0.90765 1.22337 0.98727 0.94054 0.92168 1.21177 1.01294 0.99614 0.93420 1.24198 0.89825 1.03642 1.00276 1.27121 1.00924 0.88465 0.87280 1.98720 1.78748 1.32575 1.96669 1.98724 1.96658 1.77340 1.34887 0.92455 0.91176 0.92465 0.91805 0.96522 1.02842 0.96407 0.92933 0.89162 0.95648 0.91203 0.91919 0.91370 0.86893 0.85544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 9.98 71.98 0.72 -2.98 16 2 C 0.05 1.93 5.52 86.30 0.48 2.41 16 3 N -0.53 -20.94 3.24 -900.80 -2.92 -23.86 16 4 C 0.21 10.55 4.21 85.56 0.36 10.91 16 5 C -0.52 -27.81 8.29 25.60 0.21 -27.59 16 6 H 0.06 3.31 7.25 -2.91 -0.02 3.29 16 7 C 0.01 0.29 5.46 84.66 0.46 0.75 16 8 N -0.93 -54.31 13.29 21.45 0.28 -54.03 16 9 Si 0.96 43.17 29.54 68.60 2.03 45.19 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 12 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 13 C 0.09 3.00 4.01 86.30 0.35 3.35 16 14 C -0.07 -2.16 1.80 -52.18 -0.09 -2.25 16 15 C -0.10 -2.98 8.71 71.98 0.63 -2.35 16 16 C -0.14 -4.05 9.37 30.59 0.29 -3.77 16 17 C 0.01 0.37 3.61 30.59 0.11 0.48 16 18 Cl -0.09 -2.32 27.80 -2.72 -0.08 -2.40 16 19 Cl -0.10 -2.67 28.32 -2.72 -0.08 -2.75 16 20 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 21 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.06 1.46 6.48 -2.39 -0.02 1.44 16 23 H 0.06 2.61 6.59 -2.39 -0.02 2.59 16 24 H 0.02 0.60 8.06 -2.39 -0.02 0.58 16 25 H -0.05 -2.57 8.12 -2.39 -0.02 -2.59 16 26 H 0.02 0.94 7.30 -2.38 -0.02 0.92 16 27 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 28 H 0.09 2.71 6.19 -2.39 -0.01 2.70 16 29 H 0.03 0.90 7.75 -2.39 -0.02 0.89 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 31 H 0.06 1.71 7.24 -2.39 -0.02 1.69 16 32 H 0.07 2.52 7.16 -2.38 -0.02 2.51 16 33 H 0.11 3.32 8.05 -2.39 -0.02 3.30 16 34 H 0.13 3.36 8.14 -2.38 -0.02 3.34 16 Total: -1.00 -57.33 305.54 3.82 -53.52 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 1.08 Total: 5.37 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: 3.51 Total: -21.05 kcal Atomic # 7 Polarization: -75.25 SS G_CDS: -2.64 Total: -77.89 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 17 Polarization: -4.99 SS G_CDS: -0.15 Total: -5.14 kcal Total: -57.33 3.82 -53.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827969740.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.250 kcal (2) G-P(sol) polarization free energy of solvation -57.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds