Wall clock time and date at job start Mon Mar 30 2020 00:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47304 * 284.86322 * 3 2 1 5 5 C 1.36929 * 120.00593 * 264.14004 * 4 3 2 6 6 H 1.07998 * 120.00393 * 201.80500 * 5 4 3 7 7 C 1.38817 * 119.99824 * 21.80468 * 5 4 3 8 8 N 1.31612 * 120.00128 * 17.53591 * 7 5 4 9 9 Si 1.86800 * 119.99702 * 197.54152 * 7 5 4 10 10 H 1.48494 * 109.47422 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.46882 * 120.00202 * 9 7 5 12 12 H 1.48500 * 109.46718 * 239.99421 * 9 7 5 13 13 C 1.46504 * 119.99278 * 84.14072 * 4 3 2 14 14 C 1.50702 * 109.47103 * 275.24358 * 13 4 3 15 15 C 1.38162 * 119.97712 * 100.89734 * 14 13 4 16 16 C 1.38704 * 119.95195 * 179.76992 * 15 14 13 17 17 O 1.35925 * 120.03893 * 180.22694 * 16 15 14 18 18 C 1.38742 * 119.91641 * 0.50312 * 16 15 14 19 19 C 1.38116 * 119.95876 * 359.74596 * 18 16 15 20 20 C 1.38344 * 119.97663 * 281.16671 * 14 13 4 21 21 Cl 1.73605 * 119.95967 * 0.02562 * 20 14 13 22 22 H 4.40637 * 5.51372 * 179.97438 * 4 1 2 23 23 H 1.09011 * 109.47095 * 164.86985 * 3 2 1 24 24 H 1.08998 * 109.47797 * 44.87289 * 3 2 1 25 25 H 0.96998 * 120.00492 * 179.97438 * 8 7 5 26 26 H 1.08998 * 109.47613 * 35.24482 * 13 4 3 27 27 H 1.09003 * 109.46963 * 155.24558 * 13 4 3 28 28 H 1.07996 * 120.02419 * 359.97438 * 15 14 13 29 29 H 0.96693 * 114.00088 * 270.27081 * 17 16 15 30 30 H 1.08003 * 120.01881 * 179.72246 * 18 16 15 31 31 H 1.08000 * 119.97861 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.3534 1.3350 5 6 3.4765 0.6316 2.2225 6 1 4.1463 0.4124 3.0409 7 6 2.9622 1.9120 2.0705 8 7 1.9042 2.1105 1.3133 9 14 3.7719 3.3531 2.9405 10 1 4.9354 2.8674 3.7251 11 1 4.2315 4.3439 1.9343 12 1 2.7920 3.9936 3.8541 13 6 3.2572 -1.7615 1.7203 14 6 1.9285 -2.2615 2.2261 15 6 1.1172 -3.0187 1.4031 16 6 -0.1035 -3.4826 1.8708 17 8 -0.9010 -4.2316 1.0642 18 6 -0.5119 -3.1764 3.1609 19 6 0.2997 -2.4148 3.9788 20 6 1.5196 -1.9573 3.5122 21 17 2.5374 -0.9992 4.5418 22 1 -1.0499 0.0002 0.0001 23 1 3.0089 0.9930 -0.2683 24 1 3.0098 -0.7274 -0.7250 25 1 1.5445 3.0051 1.2073 26 1 3.5612 -2.3500 0.8547 27 1 4.0054 -1.8591 2.5069 28 1 1.4346 -3.2520 0.3976 29 1 -1.5210 -3.7133 0.5332 30 1 -1.4640 -3.5330 3.5252 31 1 -0.0181 -2.1759 4.9829 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859292904.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:04:36 Heat of formation + Delta-G solvation = 61.638393 kcal Electronic energy + Delta-G solvation = -18006.250570 eV Core-core repulsion = 15088.574186 eV Total energy + Delta-G solvation = -2917.676384 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.36690 -36.99845 -35.78264 -35.21023 -32.06580 -31.50406 -30.15313 -28.95734 -26.29665 -25.59259 -22.33027 -22.15240 -20.56104 -17.64694 -17.46579 -16.44270 -16.26140 -15.52287 -15.03515 -14.86607 -13.80469 -13.69103 -13.34323 -13.22599 -12.53916 -12.46062 -11.92502 -11.71354 -11.45713 -11.25326 -10.89837 -10.72010 -10.58644 -10.46924 -10.23773 -9.92712 -9.76732 -8.99720 -8.81427 -8.44540 -8.28375 -7.84615 -6.98705 -5.76921 -3.20607 1.58914 1.74657 2.95676 3.35479 3.44414 3.45213 3.92379 4.25389 4.41747 4.55014 4.58497 5.23013 5.25882 5.41939 5.65299 5.66413 5.83579 5.90470 6.00337 6.19152 6.35057 6.47992 6.59768 6.68828 6.78498 6.96942 7.10325 7.18827 7.42695 7.79910 7.91013 8.28523 9.10388 9.24179 9.73581 10.20333 11.25407 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.021661 B = 0.008852 C = 0.007366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.325945 B = 3162.536851 C = 3800.512255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C -0.086 4.086 3 C 0.268 3.732 4 N -0.569 5.569 5 C -0.246 4.246 6 H 0.079 0.921 7 C 0.006 3.994 8 N -0.887 5.887 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.292 1.292 13 C 0.172 3.828 14 C -0.060 4.060 15 C -0.123 4.123 16 C 0.098 3.902 17 O -0.504 6.504 18 C -0.152 4.152 19 C -0.105 4.105 20 C -0.018 4.018 21 Cl -0.056 7.056 22 H 0.184 0.816 23 H 0.095 0.905 24 H 0.036 0.964 25 H 0.253 0.747 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.124 0.876 29 H 0.386 0.614 30 H 0.124 0.876 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.198 -8.626 0.591 8.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 C -0.089 4.089 3 C 0.143 3.857 4 N -0.287 5.287 5 C -0.375 4.375 6 H 0.097 0.903 7 C -0.193 4.193 8 N -0.530 5.530 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.219 1.219 13 C 0.046 3.954 14 C -0.065 4.065 15 C -0.143 4.143 16 C 0.054 3.946 17 O -0.313 6.313 18 C -0.172 4.172 19 C -0.124 4.124 20 C -0.045 4.045 21 Cl -0.026 7.026 22 H 0.201 0.799 23 H 0.113 0.887 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.142 0.858 29 H 0.241 0.759 30 H 0.142 0.858 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.774 -8.797 0.892 9.019 hybrid contribution -0.687 1.544 0.501 1.763 sum -2.461 -7.254 1.393 7.785 Atomic orbital electron populations 1.23995 0.95152 1.07837 1.05288 1.24086 0.95082 0.94038 0.95691 1.17811 0.83043 0.99618 0.85205 1.44387 1.73586 0.99605 1.11117 1.19300 1.21118 0.88024 1.09051 0.90330 1.24979 0.96081 0.98650 0.99606 1.70051 1.20560 1.20607 1.41763 0.86319 0.78962 0.83149 0.79011 1.20252 1.21590 1.21902 1.20174 0.90763 0.86457 0.98041 1.20881 1.01066 0.93411 0.91111 1.21101 0.94683 0.98611 0.99926 1.18404 0.91326 0.94586 0.90268 1.84769 1.52952 1.35351 1.58274 1.21071 1.00512 1.01050 0.94535 1.20803 0.93028 0.98450 1.00113 1.20711 0.93391 0.97666 0.92765 1.98363 1.67518 1.70103 1.66652 0.79851 0.88695 0.94611 0.93655 0.93079 0.91240 0.85767 0.75888 0.85810 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.74 19.25 29.55 0.57 -6.17 16 2 C -0.09 -2.00 10.46 -37.12 -0.39 -2.39 16 3 C 0.27 6.05 5.45 -6.83 -0.04 6.01 16 4 N -0.57 -13.06 2.52 -177.95 -0.45 -13.51 16 5 C -0.25 -6.17 7.71 -15.06 -0.12 -6.28 16 6 H 0.08 1.97 7.01 -52.49 -0.37 1.61 16 7 C 0.01 0.16 4.93 -17.43 -0.09 0.07 16 8 N -0.89 -24.40 9.39 55.49 0.52 -23.88 16 9 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 C 0.17 3.38 5.40 -5.19 -0.03 3.36 16 14 C -0.06 -1.16 4.89 -104.61 -0.51 -1.67 16 15 C -0.12 -2.19 9.25 -39.44 -0.36 -2.55 16 16 C 0.10 1.63 6.70 -39.22 -0.26 1.36 16 17 O -0.50 -7.23 13.50 -19.50 -0.26 -7.49 16 18 C -0.15 -2.44 9.99 -39.44 -0.39 -2.84 16 19 C -0.10 -1.81 9.82 -39.57 -0.39 -2.20 16 20 C -0.02 -0.34 6.31 -39.49 -0.25 -0.59 16 21 Cl -0.06 -1.10 24.75 -51.86 -1.28 -2.39 16 22 H 0.18 3.52 7.80 -54.10 -0.42 3.10 16 23 H 0.10 2.34 6.64 -51.92 -0.34 2.00 16 24 H 0.04 0.70 8.02 -51.93 -0.42 0.29 16 25 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 26 H 0.05 0.89 7.86 -51.93 -0.41 0.48 16 27 H 0.07 1.34 7.23 -51.93 -0.38 0.97 16 28 H 0.12 2.07 8.03 -52.49 -0.42 1.65 16 29 H 0.39 3.94 9.06 45.56 0.41 4.35 16 30 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 31 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 287.30 15.07 4.33 4.33 Total: -1.00 -29.38 287.30 -6.75 -36.13 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -2.32 Total: 4.45 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -2.26 Total: -13.90 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.07 Total: -37.39 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.26 Total: -7.49 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.28 Total: -2.39 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.38 -6.75 -36.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859292904.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.772 kcal (2) G-P(sol) polarization free energy of solvation -29.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds