Wall clock time and date at job start Mon Mar 30 2020 00:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 S 1.81398 * 109.47516 * 341.09760 * 3 2 1 5 5 C 1.81402 * 103.00047 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47099 * 179.97438 * 5 4 3 7 7 O 1.21303 * 119.99816 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99675 * 180.27969 * 6 5 4 9 9 C 1.40595 * 119.99527 * 179.72943 * 8 6 5 10 10 C 1.40649 * 126.08553 * 359.68015 * 9 8 6 11 11 N 1.30903 * 108.38945 * 179.87998 * 10 9 8 12 12 N 1.40074 * 108.40705 * 0.38914 * 11 10 9 13 13 C 1.37320 * 126.07077 * 179.73305 * 12 11 10 14 14 H 1.07999 * 120.00028 * 180.02562 * 13 12 11 15 15 C 1.38983 * 120.00055 * 0.02562 * 13 12 11 16 16 N 1.31296 * 119.99923 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00025 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47091 * 60.00391 * 17 15 13 19 19 H 1.48503 * 109.47066 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47397 * 300.00434 * 17 15 13 21 21 C 1.35679 * 126.07814 * 179.97438 * 9 8 6 22 22 H 4.62824 * 6.06347 * 179.97438 * 4 1 2 23 23 H 1.08996 * 109.47032 * 221.09583 * 3 2 1 24 24 H 1.09002 * 109.47163 * 101.10096 * 3 2 1 25 25 H 1.09009 * 109.46681 * 59.99866 * 5 4 3 26 26 H 1.08998 * 109.47004 * 300.00344 * 5 4 3 27 27 H 0.97001 * 120.00485 * 359.71840 * 8 6 5 28 28 H 1.07999 * 125.80209 * 0.02562 * 10 9 8 29 29 H 0.97004 * 120.00252 * 179.97438 * 16 15 13 30 30 H 1.07996 * 126.24944 * 359.92772 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 16 3.2515 -1.6170 0.5540 5 6 5.0539 -1.4230 0.4870 6 6 5.7138 -2.7045 0.9265 7 8 5.0349 -3.6555 1.2525 8 7 7.0582 -2.7923 0.9624 9 6 7.6739 -3.9861 1.3779 10 6 7.0147 -5.1590 1.7877 11 7 7.9185 -6.0544 2.0960 12 7 9.1853 -5.4882 1.9047 13 6 10.3901 -6.1091 2.1251 14 1 11.3127 -5.5773 1.9448 15 6 10.4223 -7.4219 2.5803 16 7 9.3007 -8.0685 2.7991 17 14 12.0612 -8.2668 2.8795 18 1 12.8269 -7.5129 3.9045 19 1 11.8237 -9.6523 3.3582 20 1 12.8358 -8.3070 1.6133 21 6 9.0096 -4.2096 1.4601 22 1 -1.0497 -0.0004 0.0004 23 1 3.0090 0.7753 0.6755 24 1 3.0093 0.1987 -1.0085 25 1 5.3569 -0.6126 1.1501 26 1 5.3565 -1.1895 -0.5338 27 1 7.6011 -2.0320 0.7013 28 1 5.9448 -5.2981 1.8371 29 1 9.3232 -8.9849 3.1164 30 1 9.7911 -3.5048 1.2178 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900438253.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:39 Heat of formation + Delta-G solvation = 108.216098 kcal Electronic energy + Delta-G solvation = -16267.013214 eV Core-core repulsion = 13385.693048 eV Total energy + Delta-G solvation = -2881.320166 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.91407 -38.54616 -34.31209 -34.17819 -33.18842 -30.60984 -29.95684 -28.71223 -27.37918 -24.76061 -21.25668 -20.53960 -19.44317 -18.69904 -17.56367 -16.67558 -16.09489 -15.49372 -15.46497 -15.28711 -14.61647 -14.51295 -14.01412 -13.63183 -13.40081 -13.14614 -12.81943 -12.53020 -11.68013 -11.44117 -11.24192 -10.97431 -10.81264 -10.60148 -10.55894 -10.19109 -9.89367 -9.30823 -9.17476 -8.81359 -8.06656 -7.73894 -6.72453 -6.55658 -4.23396 1.05159 2.29204 2.54338 2.76026 2.95393 3.02142 3.04646 3.08987 3.56117 3.65802 3.87039 4.00644 4.39549 4.68659 4.88677 4.95711 5.00740 5.02418 5.03823 5.21945 5.63755 6.22704 6.43366 6.86556 6.94152 7.08545 7.22723 7.29850 7.84929 8.12007 8.26106 8.60084 8.79732 9.37151 9.66367 10.40239 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.084773 B = 0.003135 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 330.213963 B = 8928.235082 C = 9237.977729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.177 4.177 3 C -0.004 4.004 4 S -0.153 6.153 5 C -0.127 4.127 6 C 0.513 3.487 7 O -0.515 6.515 8 N -0.619 5.619 9 C -0.061 4.061 10 C -0.032 4.032 11 N -0.260 5.260 12 N -0.142 5.142 13 C -0.324 4.324 14 H 0.116 0.884 15 C 0.046 3.954 16 N -0.769 5.769 17 Si 0.935 3.065 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.267 1.267 21 C -0.083 4.083 22 H 0.223 0.777 23 H 0.103 0.897 24 H 0.103 0.897 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.398 0.602 28 H 0.176 0.824 29 H 0.276 0.724 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.545 15.467 -5.338 17.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C -0.151 4.151 4 S 0.075 5.925 5 C -0.279 4.279 6 C 0.297 3.703 7 O -0.391 6.391 8 N -0.262 5.262 9 C -0.167 4.167 10 C -0.207 4.207 11 N -0.091 5.091 12 N 0.091 4.909 13 C -0.456 4.456 14 H 0.133 0.867 15 C -0.171 4.171 16 N -0.396 5.396 17 Si 0.759 3.241 18 H -0.192 1.192 19 H -0.201 1.201 20 H -0.192 1.192 21 C -0.235 4.235 22 H 0.240 0.760 23 H 0.121 0.879 24 H 0.121 0.879 25 H 0.127 0.873 26 H 0.127 0.873 27 H 0.231 0.769 28 H 0.193 0.807 29 H 0.086 0.914 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.431 12.446 -4.300 15.120 hybrid contribution 1.549 2.147 -0.737 2.748 sum -5.882 14.593 -5.037 16.520 Atomic orbital electron populations 1.24872 0.95756 0.98853 1.00039 1.21741 0.93002 1.01777 1.01343 1.20297 0.89171 1.00315 1.05303 1.88006 1.00957 1.15196 1.88298 1.23509 0.96852 1.01300 1.06244 1.19321 0.82340 0.88298 0.80340 1.90658 1.62717 1.38022 1.47708 1.42343 1.05203 1.14099 1.64561 1.17240 0.90902 0.88767 1.19794 1.24127 1.00089 0.90791 1.05713 1.78269 0.86238 1.19540 1.25065 1.44557 1.05510 1.05835 1.35030 1.19823 0.81985 0.97042 1.46743 0.86651 1.25648 0.99215 0.96641 0.95640 1.70208 1.26330 1.10804 1.32225 0.85890 0.80312 0.78558 0.79350 1.19157 1.20120 1.19164 1.21241 0.94795 0.90923 1.16496 0.76034 0.87898 0.87898 0.87315 0.87318 0.76941 0.80688 0.91363 0.83678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 19.25 29.55 0.57 -1.00 16 2 C -0.18 -1.86 13.35 -37.12 -0.50 -2.36 16 3 C 0.00 -0.04 6.42 34.37 0.22 0.18 16 4 S -0.15 -2.04 20.83 -107.50 -2.24 -4.28 16 5 C -0.13 -1.45 6.42 36.01 0.23 -1.22 16 6 C 0.51 8.80 7.82 -10.98 -0.09 8.71 16 7 O -0.52 -11.25 13.02 5.54 0.07 -11.17 16 8 N -0.62 -10.64 5.47 -10.00 -0.05 -10.70 16 9 C -0.06 -1.41 6.90 -83.84 -0.58 -1.99 16 10 C -0.03 -0.84 10.85 -17.04 -0.18 -1.03 16 11 N -0.26 -7.64 10.40 30.80 0.32 -7.32 16 12 N -0.14 -3.90 3.74 -11.41 -0.04 -3.95 16 13 C -0.32 -8.56 10.25 -14.82 -0.15 -8.71 16 14 H 0.12 2.70 7.83 -52.49 -0.41 2.29 16 15 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 16 N -0.77 -21.63 11.81 55.49 0.66 -20.98 16 17 Si 0.94 18.92 29.55 -169.99 -5.02 13.89 16 18 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 19 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 20 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 21 C -0.08 -1.95 11.49 -16.39 -0.19 -2.14 16 22 H 0.22 1.15 7.80 -54.11 -0.42 0.73 16 23 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.10 0.74 8.14 -51.92 -0.42 0.31 16 25 H 0.11 0.93 8.14 -51.92 -0.42 0.51 16 26 H 0.11 0.93 8.14 -51.92 -0.42 0.51 16 27 H 0.40 5.00 8.83 -40.82 -0.36 4.64 16 28 H 0.18 4.67 5.92 -52.49 -0.31 4.36 16 29 H 0.28 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.15 2.79 8.06 -52.49 -0.42 2.37 16 LS Contribution 293.70 15.07 4.43 4.43 Total: -1.00 -35.13 293.70 -5.40 -40.53 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -2.75 Total: 7.99 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -0.76 Total: -8.46 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.88 Total: -42.94 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.07 Total: -11.17 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.89 kcal Atomic # 16 Polarization: -2.04 SS G_CDS: -2.24 Total: -4.28 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -35.13 -5.40 -40.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900438253.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.750 kcal (2) G-P(sol) polarization free energy of solvation -35.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds