Wall clock time and date at job start Mon Mar 30 2020 00:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47114 * 2 1 4 4 C 1.47201 * 109.46971 * 239.99873 * 2 1 3 5 5 N 2.60794 * 109.47058 * 239.99932 * 2 1 3 6 6 N 1.46907 * 109.47140 * 120.00082 * 2 1 3 7 7 C 1.46898 * 111.00046 * 58.95281 * 6 2 1 8 8 C 1.38400 * 110.99885 * 294.99971 * 6 2 1 9 9 N 1.32745 * 119.43979 * 87.42002 * 8 6 2 10 10 C 1.31472 * 121.74470 * 179.97438 * 9 8 6 11 11 C 1.40798 * 120.38909 * 0.02562 * 10 9 8 12 12 C 1.41189 * 120.56663 * 180.02562 * 11 10 9 13 13 H 1.07994 * 119.99660 * 23.05449 * 12 11 10 14 14 C 1.39861 * 120.00114 * 203.04959 * 12 11 10 15 15 N 1.30906 * 119.99826 * 18.01705 * 14 12 11 16 16 Si 1.86799 * 120.00322 * 198.01788 * 14 12 11 17 17 H 1.48501 * 109.47133 * 59.99724 * 16 14 12 18 18 H 1.48503 * 109.47476 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47037 * 300.00351 * 16 14 12 20 20 C 1.41281 * 118.86433 * 359.97438 * 11 10 9 21 21 C 1.36671 * 118.40491 * 359.74380 * 20 11 10 22 22 Cl 1.73605 * 120.26341 * 180.26517 * 21 20 11 23 23 H 1.09007 * 109.46902 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47017 * 299.99616 * 1 2 3 25 25 H 1.08994 * 109.47480 * 59.99962 * 1 2 3 26 26 H 1.09000 * 109.47199 * 54.59499 * 7 6 2 27 27 H 1.09001 * 109.46967 * 174.59436 * 7 6 2 28 28 H 1.08993 * 109.47109 * 294.59856 * 7 6 2 29 29 H 1.07993 * 119.80797 * 179.97438 * 10 9 8 30 30 H 0.97000 * 119.99776 * 180.02562 * 15 14 12 31 31 H 1.08005 * 120.79806 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6939 -1.2019 5 7 2.3993 -1.2294 -2.1294 6 7 2.0197 -0.6925 1.1995 7 6 1.5283 -2.0761 1.2460 8 6 1.6702 -0.0032 2.3476 9 7 0.4950 -0.2392 2.9180 10 6 0.1172 0.3891 4.0094 11 6 0.9609 1.3428 4.6104 12 6 0.5592 2.0193 5.7827 13 1 -0.1856 1.5813 6.4305 14 6 1.1260 3.2566 6.1051 15 7 1.7449 3.9526 5.1852 16 14 0.9998 3.9161 7.8483 17 1 1.6534 2.9671 8.7850 18 1 1.6756 5.2360 7.9284 19 1 -0.4304 4.0695 8.2171 20 6 2.2166 1.6104 4.0209 21 6 2.5632 0.9254 2.8901 22 17 4.0975 1.2112 2.1298 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.7943 -2.5875 0.3209 27 1 1.9817 -2.5944 2.0910 28 1 0.4444 -2.0731 1.3607 29 1 -0.8461 0.1731 4.4470 30 1 2.1382 4.8106 5.4089 31 1 2.8881 2.3361 4.4555 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157491358.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:56 Heat of formation + Delta-G solvation = 59.316488 kcal Electronic energy + Delta-G solvation = -17530.304973 eV Core-core repulsion = 14644.820655 eV Total energy + Delta-G solvation = -2885.484319 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.59517 -37.42717 -35.57019 -35.48870 -34.05208 -30.90517 -30.57090 -29.38501 -26.38822 -25.26145 -23.29615 -21.86921 -20.72636 -17.71825 -17.15724 -16.64021 -15.82969 -15.31161 -14.68916 -14.37269 -14.13021 -13.38589 -13.04343 -12.87403 -12.59273 -12.35456 -12.21532 -12.01022 -11.83254 -11.58226 -11.49549 -11.34879 -11.24201 -11.09494 -10.92339 -10.71427 -10.49004 -9.93562 -9.60880 -8.80169 -8.29490 -8.14300 -7.54408 -7.13470 -4.74636 2.19488 2.61831 2.84693 2.89786 2.91643 3.00647 3.02396 3.22133 3.65723 4.09572 4.27678 4.53093 5.21124 5.32277 5.41265 5.67523 5.77079 5.87841 6.05631 6.11249 6.31918 6.43921 6.46880 6.52448 6.70499 6.82135 6.90330 7.24211 7.43244 7.60979 7.74487 7.91278 8.14176 8.36032 8.40980 9.21390 9.75837 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.031768 B = 0.005846 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.166122 B = 4788.581391 C = 5237.583134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.174 3.826 3 H 0.119 0.881 4 C 0.233 3.767 5 N -0.447 5.447 6 N -0.451 5.451 7 C 0.032 3.968 8 C 0.130 3.870 9 N -0.462 5.462 10 C -0.012 4.012 11 C 0.074 3.926 12 C -0.432 4.432 13 H 0.090 0.910 14 C 0.073 3.927 15 N -0.773 5.773 16 Si 0.916 3.084 17 H -0.260 1.260 18 H -0.275 1.275 19 H -0.261 1.261 20 C -0.135 4.135 21 C -0.010 4.010 22 Cl -0.098 7.098 23 H 0.064 0.936 24 H 0.089 0.911 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.134 0.866 30 H 0.290 0.710 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.200 -1.178 -0.921 1.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.064 3.936 3 H 0.137 0.863 4 C -0.085 4.085 5 N -0.124 5.124 6 N -0.173 5.173 7 C -0.116 4.116 8 C -0.098 4.098 9 N -0.172 5.172 10 C -0.176 4.176 11 C 0.068 3.932 12 C -0.460 4.460 13 H 0.108 0.892 14 C -0.149 4.149 15 N -0.396 5.396 16 Si 0.740 3.260 17 H -0.184 1.184 18 H -0.200 1.200 19 H -0.186 1.186 20 C -0.161 4.161 21 C -0.040 4.040 22 Cl -0.069 7.069 23 H 0.083 0.917 24 H 0.108 0.892 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.151 0.849 30 H 0.101 0.899 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.371 -2.351 -2.873 3.731 hybrid contribution -0.265 1.313 1.498 2.009 sum -0.636 -1.038 -1.376 1.837 Atomic orbital electron populations 1.22368 0.93732 1.03425 1.03671 1.19329 0.94198 0.97343 0.82777 0.86320 1.29071 0.92400 0.93006 0.94036 1.81116 1.09501 1.09412 1.12348 1.59852 1.56614 1.02046 0.98809 1.22267 1.00057 0.88190 1.01109 1.18186 0.92038 1.03039 0.96493 1.67091 1.14596 1.24438 1.11112 1.22374 0.99639 1.00997 0.94631 1.18469 0.90348 0.91675 0.92675 1.19599 1.19466 1.01720 1.05210 0.89228 1.26072 0.92796 0.96499 0.99538 1.69790 1.24286 1.11280 1.34195 0.86200 0.79963 0.78506 0.81346 1.18410 1.19979 1.18584 1.21353 0.97495 1.01712 0.95503 1.21075 0.86656 0.99636 0.96662 1.98275 1.31055 1.95516 1.82097 0.91686 0.89216 0.92258 0.92964 0.91393 0.92973 0.84896 0.89871 0.84242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 8.30 37.16 0.31 -2.19 16 2 C 0.17 2.75 2.79 -70.50 -0.20 2.56 16 3 H 0.12 1.88 8.11 -51.93 -0.42 1.46 16 4 C 0.23 3.76 13.40 -20.76 -0.28 3.48 16 5 N -0.45 -7.82 18.54 42.15 0.78 -7.04 16 6 N -0.45 -8.02 4.08 -176.54 -0.72 -8.74 16 7 C 0.03 0.51 8.42 60.06 0.51 1.02 16 8 C 0.13 2.63 5.01 -155.06 -0.78 1.85 16 9 N -0.46 -9.46 7.49 -11.75 -0.09 -9.54 16 10 C -0.01 -0.25 10.97 -16.74 -0.18 -0.43 16 11 C 0.07 1.68 5.60 -106.65 -0.60 1.09 16 12 C -0.43 -9.69 9.06 -37.86 -0.34 -10.03 16 13 H 0.09 1.89 7.91 -52.49 -0.42 1.47 16 14 C 0.07 1.56 5.17 -17.34 -0.09 1.47 16 15 N -0.77 -17.35 10.91 55.54 0.61 -16.74 16 16 Si 0.92 16.16 29.60 -169.99 -5.03 11.13 16 17 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 18 H -0.28 -4.79 7.11 56.52 0.40 -4.39 16 19 H -0.26 -4.56 7.11 56.52 0.40 -4.16 16 20 C -0.13 -3.08 8.53 -38.99 -0.33 -3.41 16 21 C -0.01 -0.21 6.32 -39.57 -0.25 -0.46 16 22 Cl -0.10 -1.88 28.43 -51.86 -1.47 -3.35 16 23 H 0.06 0.91 6.51 -51.93 -0.34 0.58 16 24 H 0.09 1.49 6.45 -51.93 -0.33 1.16 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.79 6.95 -51.93 -0.36 0.43 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.05 0.84 5.94 -51.93 -0.31 0.53 16 29 H 0.13 2.59 8.06 -52.49 -0.42 2.17 16 30 H 0.29 5.94 8.30 -40.82 -0.34 5.60 16 31 H 0.14 3.32 6.16 -52.48 -0.32 3.00 16 LS Contribution 284.61 15.07 4.29 4.29 Total: -1.00 -23.61 284.61 -6.78 -30.39 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -2.90 Total: 4.67 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -2.23 Total: -5.06 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 0.58 Total: -42.07 kcal Atomic # 14 Polarization: 16.16 SS G_CDS: -5.03 Total: 11.13 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -1.47 Total: -3.35 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -23.61 -6.78 -30.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157491358.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.706 kcal (2) G-P(sol) polarization free energy of solvation -23.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds