Wall clock time and date at job start Mon Mar 30 2020 00:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47114 * 2 1 4 4 C 1.47201 * 109.46971 * 239.99873 * 2 1 3 5 5 N 2.60794 * 109.47058 * 239.99932 * 2 1 3 6 6 N 1.46907 * 109.47140 * 120.00082 * 2 1 3 7 7 C 1.46898 * 111.00046 * 58.95281 * 6 2 1 8 8 C 1.38400 * 110.99885 * 294.99971 * 6 2 1 9 9 N 1.32745 * 119.43979 * 87.42002 * 8 6 2 10 10 C 1.31472 * 121.74470 * 179.97438 * 9 8 6 11 11 C 1.40798 * 120.38909 * 0.02562 * 10 9 8 12 12 C 1.41189 * 120.56663 * 180.02562 * 11 10 9 13 13 H 1.07994 * 119.99660 * 23.05449 * 12 11 10 14 14 C 1.39861 * 120.00114 * 203.04959 * 12 11 10 15 15 N 1.30906 * 119.99826 * 18.01705 * 14 12 11 16 16 Si 1.86799 * 120.00322 * 198.01788 * 14 12 11 17 17 H 1.48501 * 109.47133 * 59.99724 * 16 14 12 18 18 H 1.48503 * 109.47476 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47037 * 300.00351 * 16 14 12 20 20 C 1.41281 * 118.86433 * 359.97438 * 11 10 9 21 21 C 1.36671 * 118.40491 * 359.74380 * 20 11 10 22 22 Cl 1.73605 * 120.26341 * 180.26517 * 21 20 11 23 23 H 1.09007 * 109.46902 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47017 * 299.99616 * 1 2 3 25 25 H 1.08994 * 109.47480 * 59.99962 * 1 2 3 26 26 H 1.09000 * 109.47199 * 54.59499 * 7 6 2 27 27 H 1.09001 * 109.46967 * 174.59436 * 7 6 2 28 28 H 1.08993 * 109.47109 * 294.59856 * 7 6 2 29 29 H 1.07993 * 119.80797 * 179.97438 * 10 9 8 30 30 H 0.97000 * 119.99776 * 180.02562 * 15 14 12 31 31 H 1.08005 * 120.79806 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6939 -1.2019 5 7 2.3993 -1.2294 -2.1294 6 7 2.0197 -0.6925 1.1995 7 6 1.5283 -2.0761 1.2460 8 6 1.6702 -0.0032 2.3476 9 7 0.4950 -0.2392 2.9180 10 6 0.1172 0.3891 4.0094 11 6 0.9609 1.3428 4.6104 12 6 0.5592 2.0193 5.7827 13 1 -0.1856 1.5813 6.4305 14 6 1.1260 3.2566 6.1051 15 7 1.7449 3.9526 5.1852 16 14 0.9998 3.9161 7.8483 17 1 1.6534 2.9671 8.7850 18 1 1.6756 5.2360 7.9284 19 1 -0.4304 4.0695 8.2171 20 6 2.2166 1.6104 4.0209 21 6 2.5632 0.9254 2.8901 22 17 4.0975 1.2112 2.1298 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.7943 -2.5875 0.3209 27 1 1.9817 -2.5944 2.0910 28 1 0.4444 -2.0731 1.3607 29 1 -0.8461 0.1731 4.4470 30 1 2.1382 4.8106 5.4089 31 1 2.8881 2.3361 4.4555 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157491358.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:56 Heat of formation + Delta-G solvation = 48.469750 kcal Electronic energy + Delta-G solvation = -17530.775323 eV Core-core repulsion = 14644.820655 eV Total energy + Delta-G solvation = -2885.954668 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.13375 -38.91269 -37.11345 -36.98250 -35.64138 -32.46824 -32.09965 -30.90579 -27.88803 -26.68846 -24.75674 -23.52394 -22.30135 -19.38001 -18.49268 -18.12825 -17.40531 -16.89453 -16.11319 -15.93030 -15.48294 -14.90029 -14.49342 -14.28508 -14.02959 -13.87097 -13.65674 -13.59406 -13.12286 -13.07407 -12.93106 -12.73382 -12.67604 -12.51419 -12.35037 -12.16343 -11.97459 -11.53986 -11.18921 -10.39174 -9.96986 -9.70207 -9.12812 -8.74156 -6.43643 0.56838 0.92654 1.44090 1.49659 1.55997 1.57275 1.63016 1.70430 2.19188 2.60208 2.80125 3.14356 3.56697 4.01754 4.12428 4.24846 4.37562 4.64103 4.72614 4.76243 4.81410 4.91440 5.05107 5.06440 5.19149 5.26324 5.29636 5.77161 5.80066 5.96944 6.24162 6.43153 6.53260 6.70189 6.76892 7.54662 8.17660 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.031768 B = 0.005846 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.166122 B = 4788.581391 C = 5237.583134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.178 3.822 3 H 0.120 0.880 4 C 0.251 3.749 5 N -0.465 5.465 6 N -0.461 5.461 7 C 0.036 3.964 8 C 0.141 3.859 9 N -0.458 5.458 10 C -0.017 4.017 11 C 0.051 3.949 12 C -0.458 4.458 13 H 0.097 0.903 14 C 0.038 3.962 15 N -0.804 5.804 16 Si 0.983 3.017 17 H -0.260 1.260 18 H -0.271 1.271 19 H -0.255 1.255 20 C -0.151 4.151 21 C -0.020 4.020 22 Cl -0.082 7.082 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.148 0.852 30 H 0.296 0.704 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.623 -1.402 -1.036 2.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.068 3.932 3 H 0.138 0.862 4 C -0.067 4.067 5 N -0.143 5.143 6 N -0.183 5.183 7 C -0.111 4.111 8 C -0.087 4.087 9 N -0.169 5.169 10 C -0.181 4.181 11 C 0.046 3.954 12 C -0.486 4.486 13 H 0.115 0.885 14 C -0.180 4.180 15 N -0.427 5.427 16 Si 0.804 3.196 17 H -0.184 1.184 18 H -0.196 1.196 19 H -0.179 1.179 20 C -0.178 4.178 21 C -0.051 4.051 22 Cl -0.054 7.054 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.166 0.834 30 H 0.107 0.893 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.801 -2.588 -3.004 4.045 hybrid contribution -0.090 1.326 1.413 1.940 sum -0.891 -1.262 -1.592 2.218 Atomic orbital electron populations 1.22280 0.92377 1.03896 1.03827 1.19311 0.95172 0.97022 0.81730 0.86247 1.28916 0.91755 0.92407 0.93636 1.81149 1.10148 1.10021 1.12946 1.59789 1.57170 1.02722 0.98605 1.22257 1.00093 0.87193 1.01596 1.18351 0.91439 1.02118 0.96813 1.67177 1.14608 1.24282 1.10790 1.22620 1.00070 1.00698 0.94759 1.18743 0.90755 0.92520 0.93374 1.19882 1.20515 1.02524 1.05698 0.88521 1.26827 0.92012 0.96316 1.02870 1.69837 1.25079 1.11849 1.35960 0.85196 0.80080 0.77776 0.76561 1.18448 1.19557 1.17915 1.21290 0.97675 1.02283 0.96503 1.21202 0.87620 0.99751 0.96491 1.98269 1.29970 1.95469 1.81688 0.91064 0.91204 0.89890 0.91715 0.91850 0.92742 0.83431 0.89340 0.85747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.41 8.30 71.98 0.60 -3.81 16 2 C 0.18 5.29 2.79 43.11 0.12 5.41 16 3 H 0.12 3.59 8.11 -2.39 -0.02 3.57 16 4 C 0.25 7.55 13.40 89.44 1.20 8.75 16 5 N -0.47 -15.35 18.54 20.01 0.37 -14.98 16 6 N -0.46 -15.66 4.08 -712.46 -2.91 -18.57 16 7 C 0.04 1.10 8.42 127.69 1.08 2.18 16 8 C 0.14 5.57 5.01 133.33 0.67 6.24 16 9 N -0.46 -18.35 7.49 -191.09 -1.43 -19.78 16 10 C -0.02 -0.73 10.97 85.37 0.94 0.21 16 11 C 0.05 2.37 5.60 -21.18 -0.12 2.25 16 12 C -0.46 -20.69 9.06 23.39 0.21 -20.48 16 13 H 0.10 4.06 7.91 -2.91 -0.02 4.04 16 14 C 0.04 1.65 5.17 85.22 0.44 2.09 16 15 N -0.80 -36.50 10.91 21.81 0.24 -36.26 16 16 Si 0.98 32.70 29.60 68.60 2.03 34.73 16 17 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 18 H -0.27 -8.74 7.11 99.48 0.71 -8.03 16 19 H -0.26 -8.16 7.11 99.48 0.71 -7.46 16 20 C -0.15 -7.01 8.53 22.65 0.19 -6.82 16 21 C -0.02 -0.85 6.32 22.28 0.14 -0.71 16 22 Cl -0.08 -3.12 28.43 -2.72 -0.08 -3.19 16 23 H 0.07 1.83 6.51 -2.38 -0.02 1.81 16 24 H 0.07 2.21 6.45 -2.39 -0.02 2.19 16 25 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.06 1.81 6.95 -2.39 -0.02 1.80 16 27 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.05 1.64 5.94 -2.39 -0.01 1.63 16 29 H 0.15 5.66 8.06 -2.91 -0.02 5.64 16 30 H 0.30 12.19 8.30 -92.71 -0.77 11.42 16 31 H 0.12 6.09 6.16 -2.91 -0.02 6.07 16 Total: -1.00 -49.00 284.61 4.85 -44.15 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 1.17 Total: 18.60 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 5.47 Total: -4.69 kcal Atomic # 7 Polarization: -85.86 SS G_CDS: -3.73 Total: -89.59 kcal Atomic # 14 Polarization: 32.70 SS G_CDS: 2.03 Total: 34.73 kcal Atomic # 17 Polarization: -3.12 SS G_CDS: -0.08 Total: -3.19 kcal Total: -49.00 4.85 -44.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157491358.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.617 kcal (2) G-P(sol) polarization free energy of solvation -49.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds