Wall clock time and date at job start Mon Mar 30 2020 00:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.40121 * 120.62650 * 247.34886 * 3 2 1 5 5 Cl 1.73603 * 120.82937 * 0.04226 * 4 3 2 6 6 C 1.38563 * 118.33404 * 180.02562 * 4 3 2 7 7 C 1.38245 * 119.48596 * 359.97438 * 6 4 3 8 8 N 1.31917 * 121.24713 * 359.72438 * 7 6 4 9 9 C 1.32383 * 121.81953 * 0.56649 * 8 7 6 10 10 N 1.38399 * 119.82404 * 179.70948 * 9 8 7 11 11 C 1.46499 * 119.99586 * 359.45287 * 10 9 8 12 12 C 1.53004 * 109.47198 * 180.27603 * 11 10 9 13 13 C 1.52997 * 109.47000 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.46940 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00043 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00213 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00298 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99907 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47136 * 89.99860 * 18 16 14 20 20 H 1.48503 * 109.47098 * 209.99926 * 18 16 14 21 21 H 1.48504 * 109.46915 * 329.99781 * 18 16 14 22 22 H 1.07997 * 120.25895 * 180.02562 * 6 4 3 23 23 H 1.08007 * 119.37621 * 179.97438 * 7 6 4 24 24 H 0.97001 * 120.00565 * 179.73311 * 10 9 8 25 25 H 1.09009 * 109.47454 * 300.27372 * 11 10 9 26 26 H 1.08998 * 109.47492 * 60.27667 * 11 10 9 27 27 H 1.08995 * 109.46638 * 300.00121 * 12 11 10 28 28 H 1.09006 * 109.47139 * 60.00254 * 12 11 10 29 29 H 1.08995 * 109.47672 * 299.99669 * 13 12 11 30 30 H 1.09007 * 109.47288 * 60.00489 * 13 12 11 31 31 H 0.96997 * 120.00401 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2816 0.4653 1.1127 5 17 2.4518 1.0512 2.5206 6 6 4.6661 0.4451 1.0614 7 6 5.2981 -0.0282 -0.0734 8 7 4.6079 -0.4669 -1.1085 9 6 3.2841 -0.4653 -1.1160 10 7 2.6015 -0.9297 -2.2267 11 6 3.3439 -1.4101 -3.3947 12 6 2.3589 -1.8567 -4.4769 13 6 3.1343 -2.3578 -5.6969 14 6 2.1641 -2.7983 -6.7626 15 1 1.1007 -2.7275 -6.5874 16 6 2.6338 -3.2917 -7.9613 17 7 1.7871 -3.6757 -8.8915 18 14 4.4730 -3.4148 -8.2641 19 1 4.9615 -4.7420 -7.8110 20 1 4.7476 -3.2551 -9.7148 21 1 5.1719 -2.3453 -7.5073 22 1 5.2471 0.7956 1.9016 23 1 6.3774 -0.0428 -0.1117 24 1 1.6315 -0.9333 -2.2335 25 1 3.9703 -0.6067 -3.7828 26 1 3.9718 -2.2526 -3.1049 27 1 1.7326 -2.6599 -4.0889 28 1 1.7310 -1.0141 -4.7669 29 1 3.7603 -1.5543 -6.0848 30 1 3.7625 -3.2003 -5.4073 31 1 2.1176 -4.0224 -9.7349 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157637955.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:17 Heat of formation + Delta-G solvation = 29.623077 kcal Electronic energy + Delta-G solvation = -16327.231738 eV Core-core repulsion = 13440.459817 eV Total energy + Delta-G solvation = -2886.771921 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.068 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.54181 -38.17183 -37.84001 -37.43520 -35.51772 -33.73576 -33.37271 -31.25178 -28.54477 -25.81814 -24.95362 -23.16969 -22.12305 -20.23977 -19.02210 -18.78114 -18.03647 -16.63625 -16.41641 -16.35628 -15.77034 -15.39516 -15.17316 -14.74593 -14.51199 -14.44494 -14.12346 -13.92688 -13.77415 -13.41305 -13.31294 -12.74572 -12.71078 -12.22723 -11.88796 -11.72073 -11.67905 -11.33593 -11.16449 -10.75729 -10.69897 -10.59937 -8.94200 -8.28767 -6.34238 -0.48358 0.19283 0.72796 1.39807 1.41825 1.44021 1.53982 1.86122 1.99591 2.38465 2.71197 2.76707 3.07125 3.43386 3.77745 3.97249 4.07480 4.21531 4.24388 4.50011 4.54149 4.91625 4.92405 4.93202 5.01313 5.31233 5.45551 5.55803 5.64689 5.89105 6.08582 6.27365 6.30265 6.74465 6.99161 7.30875 8.88205 Molecular weight = 265.07amu Principal moments of inertia in cm(-1) A = 0.036789 B = 0.003562 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.908063 B = 7858.105924 C = 8593.246398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.272 3.728 3 C -0.176 4.176 4 C 0.088 3.912 5 Cl -0.041 7.041 6 C -0.216 4.216 7 C 0.210 3.790 8 N -0.552 5.552 9 C 0.456 3.544 10 N -0.708 5.708 11 C 0.141 3.859 12 C -0.109 4.109 13 C -0.006 4.006 14 C -0.537 4.537 15 H 0.027 0.973 16 C 0.000 4.000 17 N -0.955 5.955 18 Si 0.955 3.045 19 H -0.265 1.265 20 H -0.287 1.287 21 H -0.238 1.238 22 H 0.187 0.813 23 H 0.216 0.784 24 H 0.408 0.592 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.028 0.972 30 H 0.027 0.973 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.268 10.025 24.121 28.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.042 4.042 3 C -0.189 4.189 4 C 0.051 3.949 5 Cl -0.012 7.012 6 C -0.239 4.239 7 C 0.049 3.951 8 N -0.270 5.270 9 C 0.215 3.785 10 N -0.336 5.336 11 C 0.018 3.982 12 C -0.147 4.147 13 C -0.044 4.044 14 C -0.575 4.575 15 H 0.046 0.954 16 C -0.197 4.197 17 N -0.596 5.596 18 Si 0.778 3.222 19 H -0.190 1.190 20 H -0.213 1.213 21 H -0.161 1.161 22 H 0.205 0.795 23 H 0.233 0.767 24 H 0.245 0.755 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.917 9.606 23.134 27.325 hybrid contribution -0.711 0.018 0.083 0.716 sum 10.206 9.624 23.217 27.126 Atomic orbital electron populations 1.81281 1.12597 1.10769 1.07830 1.25377 0.92370 0.92897 0.93583 1.16063 0.84681 1.20043 0.98081 1.21239 0.93592 0.93408 0.86662 1.98429 1.78742 1.85957 1.38039 1.22140 0.90674 1.07817 1.03227 1.23555 1.02143 0.84653 0.84750 1.67518 1.04405 1.23514 1.31546 1.18217 0.88676 0.86860 0.84700 1.44892 1.08972 1.65682 1.14024 1.21401 0.93928 0.99566 0.83332 1.21547 0.98081 1.00193 0.94912 1.19412 0.95587 0.96590 0.92811 1.21511 0.93672 1.42053 1.00268 0.95435 1.26110 1.03779 0.94226 0.95537 1.70085 1.37237 1.44936 1.07311 0.85583 0.79001 0.80180 0.77444 1.19043 1.21312 1.16129 0.79533 0.76728 0.75517 0.90733 0.90661 0.92821 0.92838 0.95350 0.95488 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -13.42 18.54 19.00 0.35 -13.07 16 2 C 0.27 7.02 13.28 88.33 1.17 8.19 16 3 C -0.18 -3.75 5.78 -21.02 -0.12 -3.87 16 4 C 0.09 1.42 6.40 22.80 0.15 1.56 16 5 Cl -0.04 -0.66 28.18 -2.72 -0.08 -0.74 16 6 C -0.22 -2.06 9.91 22.35 0.22 -1.84 16 7 C 0.21 2.21 11.16 84.68 0.95 3.16 16 8 N -0.55 -10.70 9.54 -192.47 -1.84 -12.53 16 9 C 0.46 10.32 7.49 133.62 1.00 11.32 16 10 N -0.71 -18.17 5.62 -344.35 -1.93 -20.10 16 11 C 0.14 3.97 5.68 86.38 0.49 4.46 16 12 C -0.11 -3.96 5.27 30.59 0.16 -3.79 16 13 C -0.01 -0.27 4.04 29.85 0.12 -0.15 16 14 C -0.54 -30.69 9.66 25.60 0.25 -30.44 16 15 H 0.03 1.75 7.99 -2.91 -0.02 1.72 16 16 C 0.00 -0.01 5.47 84.65 0.46 0.46 16 17 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16 18 Si 0.96 43.18 27.47 68.60 1.88 45.06 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 20 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.24 -9.71 6.54 99.48 0.65 -9.06 16 22 H 0.19 0.48 8.06 -2.91 -0.02 0.46 16 23 H 0.22 0.40 8.06 -2.91 -0.02 0.38 16 24 H 0.41 10.66 7.31 -92.71 -0.68 9.99 16 25 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 26 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 29 H 0.03 1.21 7.20 -2.39 -0.02 1.19 16 30 H 0.03 1.14 7.57 -2.38 -0.02 1.12 16 31 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -70.46 295.25 3.97 -66.49 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: 0.43 Total: 5.71 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 4.85 Total: -10.94 kcal Atomic # 7 Polarization: -102.46 SS G_CDS: -3.12 Total: -105.58 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.88 Total: 45.06 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.08 Total: -0.74 kcal Total: -70.46 3.97 -66.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157637955.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.117 kcal (2) G-P(sol) polarization free energy of solvation -70.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds