Wall clock time and date at job start Mon Mar 30 2020 00:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 120.00390 * 2 1 4 4 H 1.48500 * 109.47352 * 270.00203 * 3 2 1 5 5 H 1.48507 * 109.47039 * 30.00011 * 3 2 1 6 6 H 1.48493 * 109.47559 * 150.00178 * 3 2 1 7 7 C 1.37878 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99749 * 359.97438 * 7 2 1 9 9 S 1.76205 * 120.00177 * 179.97438 * 7 2 1 10 10 O 1.42097 * 106.40015 * 66.45948 * 9 7 2 11 11 O 1.42107 * 106.40089 * 293.53656 * 9 7 2 12 12 N 1.65599 * 107.21523 * 180.02562 * 9 7 2 13 13 C 1.46926 * 120.63319 * 90.00181 * 12 9 7 14 14 C 1.53191 * 108.89109 * 233.67818 * 13 12 9 15 15 C 1.53035 * 109.31327 * 305.29292 * 14 13 12 16 16 H 1.09005 * 109.46002 * 301.35718 * 15 14 13 17 17 C 1.53007 * 109.46118 * 181.38770 * 15 14 13 18 18 O 1.42904 * 109.46970 * 64.99742 * 17 15 14 19 19 C 1.53038 * 109.54175 * 61.36680 * 15 14 13 20 20 H 1.08996 * 109.50003 * 178.68400 * 19 15 14 21 21 O 1.42903 * 109.49538 * 58.58333 * 19 15 14 22 22 C 1.47207 * 120.81135 * 270.14190 * 12 9 7 23 23 H 0.97004 * 120.00015 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.58861 * 113.81820 * 13 12 9 25 25 H 1.08996 * 109.58519 * 353.53711 * 13 12 9 26 26 H 1.09003 * 109.49975 * 65.24379 * 14 13 12 27 27 H 1.09000 * 109.49553 * 185.30642 * 14 13 12 28 28 H 1.08994 * 109.47158 * 184.99502 * 17 15 14 29 29 H 1.08995 * 109.46683 * 305.00271 * 17 15 14 30 30 H 0.96696 * 113.99653 * 180.02562 * 18 17 15 31 31 H 0.96695 * 113.99597 * 180.02562 * 21 19 15 32 32 H 1.08996 * 109.53610 * 6.53508 * 22 12 9 33 33 H 1.09002 * 109.68003 * 246.22975 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 16 3.7665 -1.1941 -0.0012 10 8 4.1682 -0.6499 1.2485 11 8 4.1673 -0.6494 -1.2511 12 7 4.2566 -2.7759 -0.0025 13 6 4.4777 -3.4901 -1.2673 14 6 3.6557 -4.7828 -1.2572 15 6 4.0071 -5.5963 -0.0096 16 1 5.0741 -5.8191 -0.0099 17 6 3.2133 -6.9044 -0.0137 18 8 3.6276 -7.7095 -1.1193 19 6 3.6552 -4.7905 1.2430 20 1 3.8840 -5.3797 2.1309 21 8 2.2627 -4.4699 1.2282 22 6 4.4772 -3.4979 1.2613 23 1 -0.4850 0.8401 -0.0004 24 1 5.5358 -3.7308 -1.3709 25 1 4.1623 -2.8630 -2.1010 26 1 2.5934 -4.5384 -1.2448 27 1 3.8843 -5.3663 -2.1490 28 1 3.3955 -7.4429 0.9162 29 1 2.1498 -6.6836 -0.1034 30 1 3.1647 -8.5559 -1.1847 31 1 1.9689 -3.9581 1.9942 32 1 4.1598 -2.8748 2.0973 33 1 5.5350 -3.7391 1.3664 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951896.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:38 Heat of formation + Delta-G solvation = -180.069856 kcal Electronic energy + Delta-G solvation = -19756.381700 eV Core-core repulsion = 16522.958846 eV Total energy + Delta-G solvation = -3233.422854 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.086 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.11871 -36.54203 -35.71084 -34.96347 -34.41070 -32.97499 -32.16707 -29.89197 -26.42757 -26.30852 -22.93482 -22.28255 -19.88472 -18.67650 -17.67835 -17.26013 -16.80986 -16.30514 -15.27666 -15.14178 -14.80195 -14.50161 -14.07107 -13.96525 -13.37549 -13.32803 -12.81311 -12.62058 -12.47072 -12.16052 -11.67623 -11.41215 -11.25938 -10.86436 -10.75654 -10.58743 -10.52121 -10.43220 -10.23118 -9.88445 -9.82231 -9.66569 -9.16952 -8.98791 -8.16786 -6.74955 -5.26483 2.04489 3.08583 3.19606 3.28750 3.98173 4.11313 4.24535 4.51117 4.63413 4.93017 5.01440 5.19269 5.27939 5.43196 5.46603 5.54424 5.65236 5.73264 5.89068 5.94788 5.98686 6.06095 6.14188 6.22703 6.40031 6.71463 6.76484 7.38128 7.54784 7.61347 8.01811 8.37293 8.77506 10.37302 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.032203 B = 0.007397 C = 0.007009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.280491 B = 3784.345057 C = 3993.810729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.154 3.846 3 Si 0.797 3.203 4 H -0.247 1.247 5 H -0.256 1.256 6 H -0.221 1.221 7 C -1.009 5.009 8 H 0.130 0.870 9 S 2.675 3.325 10 O -1.011 7.011 11 O -1.011 7.011 12 N -0.994 5.994 13 C 0.126 3.874 14 C -0.122 4.122 15 C -0.074 4.074 16 H 0.084 0.916 17 C 0.083 3.917 18 O -0.575 6.575 19 C 0.098 3.902 20 H 0.058 0.942 21 O -0.552 6.552 22 C 0.097 3.903 23 H 0.279 0.721 24 H 0.057 0.943 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.039 0.961 29 H 0.057 0.943 30 H 0.375 0.625 31 H 0.382 0.618 32 H 0.095 0.905 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.797 -12.296 2.198 13.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.065 4.065 3 Si 0.617 3.383 4 H -0.171 1.171 5 H -0.180 1.180 6 H -0.143 1.143 7 C -1.144 5.144 8 H 0.148 0.852 9 S 2.778 3.222 10 O -1.001 7.001 11 O -1.001 7.001 12 N -0.829 5.829 13 C 0.000 4.000 14 C -0.161 4.161 15 C -0.093 4.093 16 H 0.102 0.898 17 C 0.006 3.994 18 O -0.380 6.380 19 C 0.037 3.963 20 H 0.076 0.924 21 O -0.358 6.358 22 C -0.030 4.030 23 H 0.089 0.911 24 H 0.075 0.925 25 H 0.110 0.890 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.221 0.779 31 H 0.230 0.770 32 H 0.113 0.887 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.665 -11.280 1.538 13.192 hybrid contribution -0.866 0.267 0.706 1.148 sum 5.799 -11.013 2.244 12.647 Atomic orbital electron populations 1.69998 1.06508 1.28787 1.40014 1.24425 0.94717 0.98591 0.88799 0.87948 0.83600 0.84962 0.81789 1.17127 1.17992 1.14345 1.30571 1.15493 1.02350 1.66012 0.85204 1.01431 0.77467 0.70170 0.73119 1.93441 1.85504 1.75851 1.45336 1.93395 1.85481 1.75858 1.45394 1.57634 1.84497 1.30947 1.09864 1.21273 0.98784 0.93828 0.86081 1.21835 1.02122 0.95404 0.96754 1.21062 0.99919 0.92936 0.95339 0.89818 1.22187 0.98620 0.90878 0.87723 1.86460 1.67160 1.33782 1.50624 1.22057 0.83009 0.94611 0.96666 0.92394 1.86524 1.22525 1.76601 1.50108 1.21983 0.99606 0.94111 0.87258 0.91081 0.92486 0.89005 0.90096 0.90872 0.94252 0.92505 0.77857 0.77001 0.88709 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.78 13.96 55.43 0.77 -23.00 16 2 C 0.15 4.41 5.47 -17.82 -0.10 4.32 16 3 Si 0.80 20.70 26.54 -169.99 -4.51 16.18 16 4 H -0.25 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.26 -6.10 7.11 56.52 0.40 -5.69 16 6 H -0.22 -5.86 5.61 56.52 0.32 -5.54 16 7 C -1.01 -27.97 10.29 30.60 0.31 -27.66 16 8 H 0.13 3.67 8.06 -52.49 -0.42 3.24 16 9 S 2.67 67.32 4.19 -107.50 -0.45 66.87 16 10 O -1.01 -26.82 14.76 -57.17 -0.84 -27.66 16 11 O -1.01 -27.45 15.54 -57.17 -0.89 -28.34 16 12 N -0.99 -19.55 3.25 -113.31 -0.37 -19.92 16 13 C 0.13 2.20 6.37 -3.71 -0.02 2.18 16 14 C -0.12 -1.93 5.13 -26.61 -0.14 -2.06 16 15 C -0.07 -1.01 2.22 -90.58 -0.20 -1.21 16 16 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 17 C 0.08 1.00 6.23 37.16 0.23 1.23 16 18 O -0.58 -6.67 13.17 -35.23 -0.46 -7.13 16 19 C 0.10 1.34 3.23 -26.61 -0.09 1.25 16 20 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 21 O -0.55 -8.70 12.00 -35.23 -0.42 -9.13 16 22 C 0.10 1.55 6.03 -3.56 -0.02 1.52 16 23 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.09 1.72 7.12 -51.93 -0.37 1.35 16 26 H 0.08 1.46 7.61 -51.93 -0.40 1.07 16 27 H 0.07 1.07 7.79 -51.93 -0.40 0.66 16 28 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.74 7.87 -51.93 -0.41 0.33 16 30 H 0.38 2.60 9.12 45.56 0.42 3.01 16 31 H 0.38 5.22 9.08 45.56 0.41 5.63 16 32 H 0.09 1.55 7.15 -51.93 -0.37 1.18 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 281.01 15.07 4.23 4.23 Total: -1.00 -34.42 281.01 -5.84 -40.25 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -2.88 Total: 8.06 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: -0.02 Total: -20.42 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.41 Total: -42.92 kcal Atomic # 8 Polarization: -69.64 SS G_CDS: -2.62 Total: -72.26 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.51 Total: 16.18 kcal Atomic # 16 Polarization: 67.32 SS G_CDS: -0.45 Total: 66.87 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -34.42 -5.84 -40.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951896.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.817 kcal (2) G-P(sol) polarization free energy of solvation -34.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds