Wall clock time and date at job start Mon Mar 30 2020 00:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 120.00390 * 2 1 4 4 H 1.48500 * 109.47352 * 270.00203 * 3 2 1 5 5 H 1.48507 * 109.47039 * 30.00011 * 3 2 1 6 6 H 1.48493 * 109.47559 * 150.00178 * 3 2 1 7 7 C 1.37878 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99749 * 359.97438 * 7 2 1 9 9 S 1.76205 * 120.00177 * 179.97438 * 7 2 1 10 10 O 1.42097 * 106.40015 * 66.45948 * 9 7 2 11 11 O 1.42107 * 106.40089 * 293.53656 * 9 7 2 12 12 N 1.65599 * 107.21523 * 180.02562 * 9 7 2 13 13 C 1.46926 * 120.63319 * 90.00181 * 12 9 7 14 14 C 1.53191 * 108.89109 * 233.67818 * 13 12 9 15 15 C 1.53035 * 109.31327 * 305.29292 * 14 13 12 16 16 H 1.09005 * 109.46002 * 301.35718 * 15 14 13 17 17 C 1.53007 * 109.46118 * 181.38770 * 15 14 13 18 18 O 1.42904 * 109.46970 * 64.99742 * 17 15 14 19 19 C 1.53038 * 109.54175 * 61.36680 * 15 14 13 20 20 H 1.08996 * 109.50003 * 178.68400 * 19 15 14 21 21 O 1.42903 * 109.49538 * 58.58333 * 19 15 14 22 22 C 1.47207 * 120.81135 * 270.14190 * 12 9 7 23 23 H 0.97004 * 120.00015 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.58861 * 113.81820 * 13 12 9 25 25 H 1.08996 * 109.58519 * 353.53711 * 13 12 9 26 26 H 1.09003 * 109.49975 * 65.24379 * 14 13 12 27 27 H 1.09000 * 109.49553 * 185.30642 * 14 13 12 28 28 H 1.08994 * 109.47158 * 184.99502 * 17 15 14 29 29 H 1.08995 * 109.46683 * 305.00271 * 17 15 14 30 30 H 0.96696 * 113.99653 * 180.02562 * 18 17 15 31 31 H 0.96695 * 113.99597 * 180.02562 * 21 19 15 32 32 H 1.08996 * 109.53610 * 6.53508 * 22 12 9 33 33 H 1.09002 * 109.68003 * 246.22975 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 16 3.7665 -1.1941 -0.0012 10 8 4.1682 -0.6499 1.2485 11 8 4.1673 -0.6494 -1.2511 12 7 4.2566 -2.7759 -0.0025 13 6 4.4777 -3.4901 -1.2673 14 6 3.6557 -4.7828 -1.2572 15 6 4.0071 -5.5963 -0.0096 16 1 5.0741 -5.8191 -0.0099 17 6 3.2133 -6.9044 -0.0137 18 8 3.6276 -7.7095 -1.1193 19 6 3.6552 -4.7905 1.2430 20 1 3.8840 -5.3797 2.1309 21 8 2.2627 -4.4699 1.2282 22 6 4.4772 -3.4979 1.2613 23 1 -0.4850 0.8401 -0.0004 24 1 5.5358 -3.7308 -1.3709 25 1 4.1623 -2.8630 -2.1010 26 1 2.5934 -4.5384 -1.2448 27 1 3.8843 -5.3663 -2.1490 28 1 3.3955 -7.4429 0.9162 29 1 2.1498 -6.6836 -0.1034 30 1 3.1647 -8.5559 -1.1847 31 1 1.9689 -3.9581 1.9942 32 1 4.1598 -2.8748 2.0973 33 1 5.5350 -3.7391 1.3664 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192951896.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:38 Heat of formation + Delta-G solvation = -212.406586 kcal Electronic energy + Delta-G solvation = -19757.783925 eV Core-core repulsion = 16522.958846 eV Total energy + Delta-G solvation = -3234.825080 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.086 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.29193 -37.76463 -37.46607 -36.49602 -36.27928 -35.13671 -33.37997 -31.14232 -28.48786 -27.59052 -24.18686 -23.48760 -21.26167 -20.37554 -19.49150 -18.75215 -18.15343 -17.64986 -17.16452 -16.69394 -16.08140 -15.69535 -15.48279 -15.42431 -15.10173 -14.93503 -14.74172 -14.00578 -13.80853 -13.43270 -13.33434 -13.18498 -12.96896 -12.71204 -12.59736 -12.43487 -11.95550 -11.83165 -11.59947 -11.44148 -11.32173 -11.18258 -10.77704 -10.74434 -9.66270 -8.92515 -7.45227 0.13206 1.03505 1.12666 1.19915 1.89091 2.43389 2.46555 3.30485 3.38180 3.48231 3.72915 3.89553 3.98981 4.24797 4.26747 4.30072 4.47584 4.58417 4.62220 4.70030 4.77473 4.85030 4.90646 5.09672 5.13439 5.31683 5.46312 5.52016 5.88332 6.16022 6.59438 6.94196 6.97244 8.25011 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.032203 B = 0.007397 C = 0.007009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.280491 B = 3784.345057 C = 3993.810729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.111 3.889 3 Si 0.819 3.181 4 H -0.245 1.245 5 H -0.220 1.220 6 H -0.230 1.230 7 C -1.026 5.026 8 H 0.112 0.888 9 S 2.693 3.307 10 O -1.026 7.026 11 O -1.035 7.035 12 N -0.991 5.991 13 C 0.118 3.882 14 C -0.116 4.116 15 C -0.076 4.076 16 H 0.104 0.896 17 C 0.090 3.910 18 O -0.589 6.589 19 C 0.098 3.902 20 H 0.100 0.900 21 O -0.574 6.574 22 C 0.084 3.916 23 H 0.289 0.711 24 H 0.090 0.910 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.038 0.962 30 H 0.395 0.605 31 H 0.387 0.613 32 H 0.086 0.914 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.277 -13.610 2.898 15.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.106 4.106 3 Si 0.636 3.364 4 H -0.168 1.168 5 H -0.142 1.142 6 H -0.152 1.152 7 C -1.159 5.159 8 H 0.130 0.870 9 S 2.795 3.205 10 O -1.017 7.017 11 O -1.025 7.025 12 N -0.830 5.830 13 C -0.007 4.007 14 C -0.155 4.155 15 C -0.095 4.095 16 H 0.122 0.878 17 C 0.012 3.988 18 O -0.397 6.397 19 C 0.038 3.962 20 H 0.118 0.882 21 O -0.382 6.382 22 C -0.042 4.042 23 H 0.099 0.901 24 H 0.108 0.892 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.245 0.755 31 H 0.236 0.764 32 H 0.104 0.896 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.104 -12.596 2.247 15.145 hybrid contribution -1.305 0.534 0.463 1.484 sum 6.799 -12.062 2.711 14.109 Atomic orbital electron populations 1.70025 1.07341 1.30124 1.40954 1.25117 0.95508 1.01090 0.88850 0.87594 0.82985 0.83492 0.82296 1.16824 1.14164 1.15241 1.31035 1.17830 1.01633 1.65394 0.86974 1.00658 0.75991 0.71691 0.72186 1.93409 1.85130 1.77364 1.45750 1.93355 1.85227 1.77594 1.46329 1.57275 1.83874 1.29602 1.12266 1.21517 1.00993 0.93851 0.84338 1.21742 0.99753 0.95089 0.98925 1.21140 1.01346 0.93237 0.93742 0.87787 1.22049 0.97165 0.90586 0.88987 1.86401 1.67653 1.35085 1.50596 1.22241 0.81510 0.93881 0.98572 0.88215 1.86515 1.24049 1.76775 1.50831 1.22420 1.02209 0.94582 0.84944 0.90086 0.89179 0.91197 0.93345 0.89680 0.91713 0.94345 0.75540 0.76420 0.89562 0.88036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.93 13.96 21.45 0.30 -49.63 16 2 C 0.11 6.42 5.47 84.66 0.46 6.89 16 3 Si 0.82 41.68 26.54 68.60 1.82 43.51 16 4 H -0.24 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.22 -9.82 7.11 99.48 0.71 -9.12 16 6 H -0.23 -11.99 5.61 99.48 0.56 -11.43 16 7 C -1.03 -58.11 10.29 67.73 0.70 -57.41 16 8 H 0.11 6.58 8.06 -2.91 -0.02 6.56 16 9 S 2.69 135.69 4.19 -56.49 -0.24 135.46 16 10 O -1.03 -54.08 14.76 -128.00 -1.89 -55.97 16 11 O -1.03 -56.44 15.54 -128.00 -1.99 -58.43 16 12 N -0.99 -37.96 3.25 -512.40 -1.66 -39.63 16 13 C 0.12 3.98 6.37 86.36 0.55 4.53 16 14 C -0.12 -3.52 5.13 30.67 0.16 -3.36 16 15 C -0.08 -1.84 2.22 -10.77 -0.02 -1.87 16 16 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 17 C 0.09 1.90 6.23 71.98 0.45 2.35 16 18 O -0.59 -11.95 13.17 -148.98 -1.96 -13.91 16 19 C 0.10 2.43 3.23 30.67 0.10 2.53 16 20 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 21 O -0.57 -17.75 12.00 -148.98 -1.79 -19.54 16 22 C 0.08 2.46 6.03 86.31 0.52 2.98 16 23 H 0.29 15.27 8.31 -92.71 -0.77 14.49 16 24 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.07 2.64 7.12 -2.39 -0.02 2.62 16 26 H 0.05 1.77 7.61 -2.39 -0.02 1.75 16 27 H 0.08 2.35 7.79 -2.39 -0.02 2.33 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.04 0.95 7.87 -2.39 -0.02 0.93 16 30 H 0.40 4.37 9.12 -74.06 -0.68 3.69 16 31 H 0.39 10.57 9.08 -74.06 -0.67 9.89 16 32 H 0.09 2.69 7.15 -2.39 -0.02 2.67 16 33 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -74.18 281.01 -4.86 -79.04 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: -0.36 Total: 22.47 kcal Atomic # 6 Polarization: -46.28 SS G_CDS: 2.91 Total: -43.37 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -1.36 Total: -89.25 kcal Atomic # 8 Polarization: -140.22 SS G_CDS: -7.63 Total: -147.85 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 1.82 Total: 43.51 kcal Atomic # 16 Polarization: 135.69 SS G_CDS: -0.24 Total: 135.46 kcal Total: -74.18 -4.86 -79.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951896.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.371 kcal (2) G-P(sol) polarization free energy of solvation -74.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds