Wall clock time and date at job start Mon Mar 30 2020 00:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00268 * 2 1 4 4 H 1.48506 * 109.47090 * 240.00177 * 3 2 1 5 5 H 1.48496 * 109.46881 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47148 * 119.99730 * 3 2 1 7 7 C 1.37879 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99780 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00044 * 0.02562 * 7 2 1 10 10 O 1.42100 * 106.40247 * 66.46210 * 9 7 2 11 11 O 1.42096 * 106.40090 * 293.53831 * 9 7 2 12 12 N 1.65604 * 107.21660 * 179.97438 * 9 7 2 13 13 C 1.46494 * 119.99919 * 65.00273 * 12 9 7 14 14 H 1.09003 * 109.47418 * 24.99360 * 13 12 9 15 15 C 1.53005 * 109.47207 * 264.99613 * 13 12 9 16 16 O 1.42900 * 109.46784 * 295.81849 * 15 13 12 17 17 C 1.52998 * 109.47399 * 144.99708 * 13 12 9 18 18 H 1.09002 * 110.43418 * 62.26742 * 17 13 12 19 19 C 1.54813 * 110.48839 * 299.57956 * 17 13 12 20 20 C 1.54996 * 102.09165 * 220.43997 * 19 17 13 21 21 O 1.44381 * 103.49000 * 37.02389 * 20 19 17 22 22 C 1.43749 * 106.97560 * 319.93696 * 21 20 19 23 23 H 0.97007 * 119.99702 * 0.02562 * 1 2 3 24 24 H 0.97000 * 119.99917 * 244.99674 * 12 9 7 25 25 H 1.08999 * 109.46839 * 55.81241 * 15 13 12 26 26 H 1.08990 * 109.47300 * 175.81095 * 15 13 12 27 27 H 0.96706 * 113.99493 * 179.97438 * 16 15 13 28 28 H 1.08999 * 110.90650 * 338.63638 * 19 17 13 29 29 H 1.09004 * 110.90570 * 102.24274 * 19 17 13 30 30 H 1.08997 * 110.61578 * 278.52204 * 20 19 17 31 31 H 1.08994 * 110.61520 * 155.52322 * 20 19 17 32 32 H 1.09000 * 109.87774 * 267.09369 * 22 21 20 33 33 H 1.08997 * 109.87927 * 145.94158 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1234 -2.7200 0.0005 10 8 0.4518 -2.7956 -1.2495 11 8 0.4509 -2.7950 1.2500 12 7 2.2482 -3.9354 0.0005 13 6 3.1392 -4.1089 1.1504 14 1 2.6679 -3.6935 2.0412 15 6 4.4598 -3.3827 0.8864 16 8 5.1244 -3.9909 -0.2228 17 6 3.4108 -5.5992 1.3650 18 1 3.9188 -6.0221 0.4982 19 6 2.0896 -6.3560 1.6449 20 6 2.5118 -7.3441 2.7618 21 8 3.4424 -6.5773 3.5559 22 6 4.2482 -5.8167 2.6401 23 1 -0.4850 0.8401 -0.0004 24 1 2.3171 -4.5325 -0.7608 25 1 4.2596 -2.3354 0.6602 26 1 5.0937 -3.4486 1.7706 27 1 5.9706 -3.5804 -0.4475 28 1 1.3181 -5.6731 2.0008 29 1 1.7532 -6.8924 0.7576 30 1 3.0017 -8.2193 2.3350 31 1 1.6493 -7.6390 3.3595 32 1 5.1557 -6.3697 2.3977 33 1 4.5052 -4.8547 3.0834 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193002763.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:18 Heat of formation + Delta-G solvation = -193.079979 kcal Electronic energy + Delta-G solvation = -19437.148833 eV Core-core repulsion = 16203.161818 eV Total energy + Delta-G solvation = -3233.987015 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.086 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.57449 -37.04746 -35.21819 -34.49612 -33.94798 -33.10455 -31.21316 -29.61242 -27.05621 -26.07645 -23.28410 -21.81994 -20.12632 -18.97918 -17.73698 -16.98408 -16.60840 -16.18844 -15.80475 -15.14624 -14.85028 -14.62149 -14.35984 -13.99802 -13.72645 -13.25426 -12.79197 -12.19869 -12.03776 -11.94112 -11.49542 -11.31632 -11.23225 -11.21828 -10.80704 -10.66635 -10.46934 -10.29747 -10.28630 -10.16841 -9.61003 -9.58207 -9.26021 -8.97245 -8.52451 -6.71941 -5.34232 2.34045 3.05269 3.10639 3.14978 4.01428 4.05208 4.47216 4.61531 4.63920 4.77311 4.84816 5.10548 5.26000 5.30821 5.46957 5.57650 5.67808 5.76018 5.78938 5.82967 5.86798 6.02043 6.12553 6.17891 6.37165 6.57015 6.88449 6.96662 7.31463 7.83570 7.91577 7.98687 8.86708 10.22361 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.026595 B = 0.007044 C = 0.006382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.596376 B = 3974.185604 C = 4386.070100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.133 3.867 3 Si 0.918 3.082 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.264 1.264 7 C -1.022 5.022 8 H 0.103 0.897 9 S 2.714 3.286 10 O -1.007 7.007 11 O -1.007 7.007 12 N -1.123 6.123 13 C 0.172 3.828 14 H 0.105 0.895 15 C 0.046 3.954 16 O -0.566 6.566 17 C -0.121 4.121 18 H 0.095 0.905 19 C -0.153 4.153 20 C 0.047 3.953 21 O -0.381 6.381 22 C 0.053 3.947 23 H 0.291 0.709 24 H 0.405 0.595 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.372 0.628 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.846 -8.590 2.867 13.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.085 4.085 3 Si 0.742 3.258 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.189 1.189 7 C -1.155 5.155 8 H 0.121 0.879 9 S 2.814 3.186 10 O -0.997 6.997 11 O -0.997 6.997 12 N -0.876 5.876 13 C 0.063 3.937 14 H 0.123 0.877 15 C -0.033 4.033 16 O -0.370 6.370 17 C -0.141 4.141 18 H 0.113 0.887 19 C -0.191 4.191 20 C -0.030 4.030 21 O -0.300 6.300 22 C -0.024 4.024 23 H 0.102 0.898 24 H 0.235 0.765 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.218 0.782 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.165 -8.906 3.281 12.520 hybrid contribution 1.578 1.434 -0.654 2.230 sum 9.743 -7.472 2.627 12.556 Atomic orbital electron populations 1.69889 1.06780 1.30821 1.39906 1.24736 0.94440 1.00748 0.88547 0.86237 0.79952 0.79915 0.79672 1.18913 1.20084 1.18886 1.30637 1.05890 1.11975 1.67044 0.87900 1.00430 0.72130 0.73258 0.72824 1.93374 1.73184 1.87617 1.45569 1.93364 1.72807 1.87545 1.45975 1.55914 1.54602 1.50978 1.26118 1.20688 0.88953 0.94071 0.89995 0.87698 1.23067 0.93768 0.98092 0.88392 1.86454 1.38262 1.60520 1.51754 1.22731 0.96215 0.96212 0.98947 0.88660 1.23243 0.98226 0.98530 0.99108 1.23559 0.92656 0.94017 0.92770 1.88851 1.50205 1.60068 1.30878 1.23227 0.93541 0.96310 0.89335 0.89822 0.76453 0.91230 0.93464 0.78200 0.89280 0.90219 0.92540 0.89093 0.92366 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.63 13.19 55.43 0.73 -23.90 16 2 C 0.13 3.66 5.46 -17.82 -0.10 3.56 16 3 Si 0.92 20.15 29.54 -169.99 -5.02 15.13 16 4 H -0.26 -5.63 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 6 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 7 C -1.02 -27.28 9.55 30.60 0.29 -26.99 16 8 H 0.10 2.46 5.54 -52.48 -0.29 2.17 16 9 S 2.71 70.57 5.00 -107.50 -0.54 70.03 16 10 O -1.01 -29.45 18.02 -57.17 -1.03 -30.48 16 11 O -1.01 -28.70 17.36 -57.17 -0.99 -29.70 16 12 N -1.12 -21.89 5.05 -4.89 -0.02 -21.92 16 13 C 0.17 2.88 1.98 -67.93 -0.13 2.74 16 14 H 0.11 1.90 7.50 -51.93 -0.39 1.51 16 15 C 0.05 0.67 6.62 37.16 0.25 0.92 16 16 O -0.57 -7.57 12.74 -35.23 -0.45 -8.02 16 17 C -0.12 -1.68 2.55 -89.09 -0.23 -1.91 16 18 H 0.10 1.27 7.56 -51.93 -0.39 0.88 16 19 C -0.15 -2.13 6.37 -24.72 -0.16 -2.29 16 20 C 0.05 0.57 7.72 38.21 0.29 0.87 16 21 O -0.38 -5.53 11.52 -35.23 -0.41 -5.93 16 22 C 0.05 0.68 6.96 37.73 0.26 0.95 16 23 H 0.29 7.66 8.31 -40.82 -0.34 7.32 16 24 H 0.40 7.14 8.84 -34.47 -0.30 6.84 16 25 H 0.07 1.14 5.64 -51.93 -0.29 0.85 16 26 H 0.05 0.56 6.87 -51.93 -0.36 0.20 16 27 H 0.37 3.36 9.12 45.56 0.42 3.78 16 28 H 0.09 1.45 7.87 -51.93 -0.41 1.04 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 1.04 6.59 -51.93 -0.34 0.70 16 LS Contribution 287.35 15.07 4.33 4.33 Total: -1.00 -35.47 287.35 -6.11 -41.58 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -3.19 Total: 11.02 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: 0.48 Total: -22.15 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.71 Total: -45.81 kcal Atomic # 8 Polarization: -71.25 SS G_CDS: -2.88 Total: -74.13 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 70.57 SS G_CDS: -0.54 Total: 70.03 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -35.47 -6.11 -41.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193002763.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.503 kcal (2) G-P(sol) polarization free energy of solvation -35.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds