Wall clock time and date at job start Mon Mar 30 2020 00:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00113 * 2 1 4 4 H 1.48496 * 109.47590 * 270.00282 * 3 2 1 5 5 H 1.48502 * 109.47137 * 30.00167 * 3 2 1 6 6 H 1.48495 * 109.47209 * 150.00145 * 3 2 1 7 7 C 1.37872 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00249 * 359.97438 * 7 2 1 9 9 S 1.76200 * 120.00284 * 179.97438 * 7 2 1 10 10 O 1.42098 * 106.40113 * 66.46037 * 9 7 2 11 11 O 1.42091 * 106.40230 * 293.53796 * 9 7 2 12 12 N 1.65604 * 107.21861 * 179.97438 * 9 7 2 13 13 C 1.46504 * 119.99832 * 65.00046 * 12 9 7 14 14 H 1.09000 * 109.47140 * 25.00355 * 13 12 9 15 15 C 1.52999 * 109.47228 * 264.99832 * 13 12 9 16 16 O 1.42904 * 109.46958 * 295.00553 * 15 13 12 17 17 C 1.53006 * 109.46845 * 145.00055 * 13 12 9 18 18 H 1.08995 * 111.01892 * 55.77593 * 17 13 12 19 19 C 1.55305 * 111.12200 * 180.02562 * 17 13 12 20 20 C 1.54382 * 102.43395 * 152.15163 * 19 17 13 21 21 O 1.43232 * 107.59109 * 338.54226 * 20 19 17 22 22 C 1.43649 * 109.97368 * 358.28680 * 21 20 19 23 23 H 0.97000 * 119.99760 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00216 * 245.00192 * 12 9 7 25 25 H 1.08999 * 109.46628 * 54.99857 * 15 13 12 26 26 H 1.08989 * 109.47073 * 175.00268 * 15 13 12 27 27 H 0.96707 * 113.99787 * 180.02562 * 16 15 13 28 28 H 1.09002 * 110.85041 * 33.86009 * 19 17 13 29 29 H 1.09001 * 110.84389 * 270.44146 * 19 17 13 30 30 H 1.09009 * 109.82643 * 98.05629 * 20 19 17 31 31 H 1.08999 * 109.83123 * 218.93188 * 20 19 17 32 32 H 1.08999 * 110.31137 * 143.34271 * 22 21 20 33 33 H 1.09000 * 110.31061 * 265.41699 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 16 3.7665 -1.1940 -0.0012 10 8 4.1682 -0.6499 1.2485 11 8 4.1673 -0.6494 -1.2509 12 7 4.2567 -2.7758 -0.0011 13 6 3.9609 -3.6345 -1.1507 14 1 3.8366 -3.0188 -2.0415 15 6 2.6719 -4.4149 -0.8860 16 8 2.8725 -5.3080 0.2113 17 6 5.1158 -4.6149 -1.3654 18 1 5.3108 -5.1931 -0.4622 19 6 4.8417 -5.5455 -2.5782 20 6 6.2668 -5.8882 -3.0629 21 8 7.1471 -4.8697 -2.5736 22 6 6.3985 -3.8808 -1.8489 23 1 -0.4850 0.8401 0.0004 24 1 4.7397 -3.1339 0.7602 25 1 1.8685 -3.7186 -0.6455 26 1 2.4039 -4.9859 -1.7749 27 1 2.0945 -5.8369 0.4353 28 1 4.2845 -5.0190 -3.3530 29 1 4.3117 -6.4450 -2.2649 30 1 6.5683 -6.8585 -2.6682 31 1 6.2919 -5.9084 -4.1524 32 1 6.9731 -3.5221 -0.9950 33 1 6.1362 -3.0499 -2.5037 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193002764.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:22 Heat of formation + Delta-G solvation = -179.774773 kcal Electronic energy + Delta-G solvation = -19428.692459 eV Core-core repulsion = 16195.282401 eV Total energy + Delta-G solvation = -3233.410058 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.086 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.56432 -37.12558 -35.64875 -34.56514 -34.45022 -33.08124 -31.68659 -29.08233 -27.64973 -26.35963 -22.82482 -22.19723 -20.31049 -19.13237 -17.73274 -17.19473 -16.63948 -16.50303 -16.08462 -15.17948 -15.07592 -14.60943 -14.23480 -13.75209 -13.70881 -13.40063 -13.25180 -12.87053 -12.31289 -12.07649 -11.75948 -11.49173 -11.42043 -11.08871 -10.85098 -10.72060 -10.69372 -10.59052 -10.51743 -9.92468 -9.61334 -9.44749 -9.24966 -9.17486 -8.64959 -6.84709 -5.39208 2.04450 3.05098 3.15281 3.25128 3.92161 3.93545 4.17249 4.52559 4.54637 4.57566 4.79185 4.93703 5.14737 5.24198 5.34224 5.45077 5.53175 5.61303 5.70679 5.75560 5.84287 5.92659 5.98216 6.09332 6.15179 6.34808 6.65099 7.03917 7.43295 7.73513 7.85297 8.15755 8.66470 10.26909 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.029673 B = 0.007093 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.381001 B = 3946.619858 C = 4389.186250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.154 3.846 3 Si 0.801 3.199 4 H -0.246 1.246 5 H -0.255 1.255 6 H -0.220 1.220 7 C -1.017 5.017 8 H 0.124 0.876 9 S 2.673 3.327 10 O -1.008 7.008 11 O -1.012 7.012 12 N -1.113 6.113 13 C 0.174 3.826 14 H 0.106 0.894 15 C 0.049 3.951 16 O -0.567 6.567 17 C -0.118 4.118 18 H 0.099 0.901 19 C -0.150 4.150 20 C 0.053 3.947 21 O -0.388 6.388 22 C 0.051 3.949 23 H 0.281 0.719 24 H 0.409 0.591 25 H 0.073 0.927 26 H 0.048 0.952 27 H 0.374 0.626 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.358 -11.126 -4.070 13.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.066 4.066 3 Si 0.621 3.379 4 H -0.170 1.170 5 H -0.179 1.179 6 H -0.142 1.142 7 C -1.151 5.151 8 H 0.142 0.858 9 S 2.774 3.226 10 O -0.998 6.998 11 O -1.002 7.002 12 N -0.868 5.868 13 C 0.065 3.935 14 H 0.124 0.876 15 C -0.030 4.030 16 O -0.371 6.371 17 C -0.138 4.138 18 H 0.117 0.883 19 C -0.188 4.188 20 C -0.024 4.024 21 O -0.308 6.308 22 C -0.025 4.025 23 H 0.091 0.909 24 H 0.241 0.759 25 H 0.091 0.909 26 H 0.067 0.933 27 H 0.220 0.780 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.505 -9.940 -4.284 12.628 hybrid contribution -1.254 0.009 0.370 1.307 sum 5.251 -9.931 -3.914 11.897 Atomic orbital electron populations 1.69977 1.06575 1.29096 1.39594 1.24420 0.94788 0.98815 0.88555 0.87864 0.83627 0.84548 0.81836 1.16993 1.17919 1.14238 1.30578 1.15626 1.02104 1.66833 0.85812 1.01429 0.77378 0.70465 0.73302 1.93478 1.85466 1.75885 1.44953 1.93408 1.85059 1.76067 1.45638 1.55478 1.73883 1.30784 1.26631 1.20626 0.92274 0.90983 0.89609 0.87610 1.22998 0.98568 0.92642 0.88806 1.86435 1.40952 1.57015 1.52717 1.23112 0.94948 0.96471 0.99291 0.88269 1.23157 0.97360 1.00515 0.97779 1.23077 0.88978 0.91760 0.98598 1.88371 1.33281 1.36313 1.72836 1.23624 0.91781 0.91236 0.95833 0.90883 0.75893 0.90873 0.93343 0.78024 0.90216 0.89755 0.91605 0.91669 0.89602 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.13 13.96 55.43 0.77 -22.35 16 2 C 0.15 4.30 5.47 -17.82 -0.10 4.21 16 3 Si 0.80 20.33 26.54 -169.99 -4.51 15.82 16 4 H -0.25 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.26 -5.97 7.11 56.52 0.40 -5.56 16 6 H -0.22 -5.74 5.61 56.52 0.32 -5.42 16 7 C -1.02 -27.24 10.09 30.60 0.31 -26.93 16 8 H 0.12 3.26 5.77 -52.48 -0.30 2.96 16 9 S 2.67 64.88 4.22 -107.50 -0.45 64.42 16 10 O -1.01 -26.87 16.02 -57.17 -0.92 -27.79 16 11 O -1.01 -26.02 16.17 -57.17 -0.92 -26.94 16 12 N -1.11 -20.73 5.30 -4.89 -0.03 -20.75 16 13 C 0.17 2.78 2.26 -67.93 -0.15 2.63 16 14 H 0.11 1.76 7.44 -51.93 -0.39 1.38 16 15 C 0.05 0.72 6.57 37.16 0.24 0.96 16 16 O -0.57 -7.66 12.86 -35.23 -0.45 -8.11 16 17 C -0.12 -1.59 2.47 -88.06 -0.22 -1.81 16 18 H 0.10 1.34 7.78 -51.93 -0.40 0.94 16 19 C -0.15 -1.64 5.45 -24.78 -0.14 -1.78 16 20 C 0.05 0.59 7.80 37.88 0.30 0.88 16 21 O -0.39 -5.64 11.36 -35.23 -0.40 -6.04 16 22 C 0.05 0.75 7.17 38.49 0.28 1.02 16 23 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.41 6.84 8.84 -34.48 -0.30 6.54 16 25 H 0.07 1.26 5.63 -51.93 -0.29 0.97 16 26 H 0.05 0.58 7.49 -51.93 -0.39 0.19 16 27 H 0.37 3.53 9.12 45.56 0.42 3.95 16 28 H 0.08 0.83 8.03 -51.93 -0.42 0.41 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.06 7.99 -51.93 -0.41 0.65 16 LS Contribution 282.46 15.07 4.26 4.26 Total: -1.00 -33.01 282.46 -5.54 -38.55 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -3.41 Total: 9.75 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: 0.52 Total: -20.81 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.75 Total: -43.11 kcal Atomic # 8 Polarization: -66.19 SS G_CDS: -2.69 Total: -68.88 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.51 Total: 15.82 kcal Atomic # 16 Polarization: 64.88 SS G_CDS: -0.45 Total: 64.42 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -33.01 -5.54 -38.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193002764.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.229 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds