Wall clock time and date at job start Mon Mar 30 2020 00:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00113 * 2 1 4 4 H 1.48496 * 109.47590 * 270.00282 * 3 2 1 5 5 H 1.48502 * 109.47137 * 30.00167 * 3 2 1 6 6 H 1.48495 * 109.47209 * 150.00145 * 3 2 1 7 7 C 1.37872 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00249 * 359.97438 * 7 2 1 9 9 S 1.76200 * 120.00284 * 179.97438 * 7 2 1 10 10 O 1.42098 * 106.40113 * 66.46037 * 9 7 2 11 11 O 1.42091 * 106.40230 * 293.53796 * 9 7 2 12 12 N 1.65604 * 107.21861 * 179.97438 * 9 7 2 13 13 C 1.46504 * 119.99832 * 65.00046 * 12 9 7 14 14 H 1.09000 * 109.47140 * 25.00355 * 13 12 9 15 15 C 1.52999 * 109.47228 * 264.99832 * 13 12 9 16 16 O 1.42904 * 109.46958 * 295.00553 * 15 13 12 17 17 C 1.53006 * 109.46845 * 145.00055 * 13 12 9 18 18 H 1.08995 * 111.01892 * 55.77593 * 17 13 12 19 19 C 1.55305 * 111.12200 * 180.02562 * 17 13 12 20 20 C 1.54382 * 102.43395 * 152.15163 * 19 17 13 21 21 O 1.43232 * 107.59109 * 338.54226 * 20 19 17 22 22 C 1.43649 * 109.97368 * 358.28680 * 21 20 19 23 23 H 0.97000 * 119.99760 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00216 * 245.00192 * 12 9 7 25 25 H 1.08999 * 109.46628 * 54.99857 * 15 13 12 26 26 H 1.08989 * 109.47073 * 175.00268 * 15 13 12 27 27 H 0.96707 * 113.99787 * 180.02562 * 16 15 13 28 28 H 1.09002 * 110.85041 * 33.86009 * 19 17 13 29 29 H 1.09001 * 110.84389 * 270.44146 * 19 17 13 30 30 H 1.09009 * 109.82643 * 98.05629 * 20 19 17 31 31 H 1.08999 * 109.83123 * 218.93188 * 20 19 17 32 32 H 1.08999 * 110.31137 * 143.34271 * 22 21 20 33 33 H 1.09000 * 110.31061 * 265.41699 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 16 3.7665 -1.1940 -0.0012 10 8 4.1682 -0.6499 1.2485 11 8 4.1673 -0.6494 -1.2509 12 7 4.2567 -2.7758 -0.0011 13 6 3.9609 -3.6345 -1.1507 14 1 3.8366 -3.0188 -2.0415 15 6 2.6719 -4.4149 -0.8860 16 8 2.8725 -5.3080 0.2113 17 6 5.1158 -4.6149 -1.3654 18 1 5.3108 -5.1931 -0.4622 19 6 4.8417 -5.5455 -2.5782 20 6 6.2668 -5.8882 -3.0629 21 8 7.1471 -4.8697 -2.5736 22 6 6.3985 -3.8808 -1.8489 23 1 -0.4850 0.8401 0.0004 24 1 4.7397 -3.1339 0.7602 25 1 1.8685 -3.7186 -0.6455 26 1 2.4039 -4.9859 -1.7749 27 1 2.0945 -5.8369 0.4353 28 1 4.2845 -5.0190 -3.3530 29 1 4.3117 -6.4450 -2.2649 30 1 6.5683 -6.8585 -2.6682 31 1 6.2919 -5.9084 -4.1524 32 1 6.9731 -3.5221 -0.9950 33 1 6.1362 -3.0499 -2.5037 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193002764.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:21 Heat of formation + Delta-G solvation = -210.238392 kcal Electronic energy + Delta-G solvation = -19430.013461 eV Core-core repulsion = 16195.282401 eV Total energy + Delta-G solvation = -3234.731060 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.62808 -38.28885 -37.64306 -36.49117 -35.80757 -35.17215 -32.85405 -30.13340 -29.01362 -28.29432 -24.00545 -23.14736 -21.51130 -20.98352 -19.55423 -18.79773 -18.04614 -17.74441 -17.36321 -16.92548 -16.51456 -15.77551 -15.64635 -15.51763 -15.20702 -14.83410 -14.65294 -14.35967 -13.88413 -13.43456 -13.24367 -13.14877 -12.80161 -12.68134 -12.57145 -12.48865 -12.20585 -11.96493 -11.71910 -11.63102 -11.33175 -11.15149 -10.71434 -10.46022 -10.24220 -8.95202 -7.50103 0.15243 1.05166 1.13849 1.21904 1.89294 2.42579 2.53704 2.93483 3.31815 3.42439 3.46713 3.79406 3.92504 4.16773 4.25441 4.29408 4.32662 4.43959 4.52042 4.55342 4.77892 4.86911 4.91707 4.96020 5.00702 5.20220 5.37322 5.43212 6.04705 6.08177 6.28990 6.56301 6.97760 8.20999 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.029673 B = 0.007093 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.381001 B = 3946.619858 C = 4389.186250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.113 3.887 3 Si 0.818 3.182 4 H -0.239 1.239 5 H -0.223 1.223 6 H -0.233 1.233 7 C -1.033 5.033 8 H 0.120 0.880 9 S 2.692 3.308 10 O -1.034 7.034 11 O -1.028 7.028 12 N -1.100 6.100 13 C 0.162 3.838 14 H 0.097 0.903 15 C 0.055 3.945 16 O -0.574 6.574 17 C -0.109 4.109 18 H 0.103 0.897 19 C -0.143 4.143 20 C 0.045 3.955 21 O -0.407 6.407 22 C 0.047 3.953 23 H 0.290 0.710 24 H 0.419 0.581 25 H 0.042 0.958 26 H 0.083 0.917 27 H 0.393 0.607 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.648 -12.483 -4.552 14.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.104 4.104 3 Si 0.636 3.364 4 H -0.162 1.162 5 H -0.145 1.145 6 H -0.156 1.156 7 C -1.166 5.166 8 H 0.138 0.862 9 S 2.792 3.208 10 O -1.024 7.024 11 O -1.018 7.018 12 N -0.859 5.859 13 C 0.055 3.945 14 H 0.114 0.886 15 C -0.025 4.025 16 O -0.381 6.381 17 C -0.129 4.129 18 H 0.121 0.879 19 C -0.181 4.181 20 C -0.031 4.031 21 O -0.327 6.327 22 C -0.029 4.029 23 H 0.101 0.899 24 H 0.254 0.746 25 H 0.061 0.939 26 H 0.101 0.899 27 H 0.242 0.758 28 H 0.104 0.896 29 H 0.125 0.875 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.759 -11.301 -4.758 14.001 hybrid contribution -1.326 0.296 0.501 1.448 sum 5.432 -11.004 -4.258 12.990 Atomic orbital electron populations 1.69992 1.07223 1.30331 1.40508 1.25055 0.95533 1.01061 0.88734 0.87593 0.82868 0.83468 0.82517 1.16220 1.14505 1.15589 1.31053 1.17537 1.01995 1.66037 0.86208 1.00649 0.76118 0.71671 0.72331 1.93435 1.85390 1.77579 1.45986 1.93381 1.84823 1.77418 1.46179 1.55017 1.73462 1.29375 1.28062 1.20923 0.94349 0.91166 0.88088 0.88555 1.22819 0.96440 0.92656 0.90539 1.86386 1.42352 1.56926 1.52429 1.23004 0.93221 0.96079 1.00647 0.87864 1.23188 0.97632 1.00746 0.96568 1.23320 0.88572 0.91576 0.99608 1.88352 1.34405 1.36932 1.73007 1.23598 0.92412 0.91277 0.95622 0.89917 0.74588 0.93938 0.89891 0.75819 0.89621 0.87536 0.89917 0.90240 0.89786 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.73 13.96 21.45 0.30 -47.43 16 2 C 0.11 6.33 5.47 84.65 0.46 6.80 16 3 Si 0.82 40.59 26.54 68.60 1.82 42.41 16 4 H -0.24 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.22 -9.82 7.11 99.48 0.71 -9.11 16 6 H -0.23 -12.05 5.61 99.48 0.56 -11.49 16 7 C -1.03 -55.68 10.09 67.73 0.68 -54.99 16 8 H 0.12 6.40 5.77 -2.91 -0.02 6.38 16 9 S 2.69 130.55 4.22 -56.49 -0.24 130.31 16 10 O -1.03 -55.14 16.02 -128.00 -2.05 -57.19 16 11 O -1.03 -52.84 16.17 -128.00 -2.07 -54.91 16 12 N -1.10 -40.23 5.30 -169.37 -0.90 -41.12 16 13 C 0.16 4.98 2.26 44.99 0.10 5.08 16 14 H 0.10 3.15 7.44 -2.39 -0.02 3.13 16 15 C 0.05 1.51 6.57 71.98 0.47 1.98 16 16 O -0.57 -14.07 12.86 -148.98 -1.92 -15.99 16 17 C -0.11 -2.71 2.47 -9.14 -0.02 -2.74 16 18 H 0.10 2.52 7.78 -2.39 -0.02 2.50 16 19 C -0.14 -2.68 5.45 31.86 0.17 -2.51 16 20 C 0.05 0.88 7.80 72.45 0.56 1.45 16 21 O -0.41 -11.13 11.36 -148.98 -1.69 -12.82 16 22 C 0.05 1.32 7.17 72.84 0.52 1.84 16 23 H 0.29 14.77 8.31 -92.71 -0.77 14.00 16 24 H 0.42 13.63 8.84 -96.74 -0.85 12.78 16 25 H 0.04 1.44 5.63 -2.39 -0.01 1.43 16 26 H 0.08 1.71 7.49 -2.39 -0.02 1.69 16 27 H 0.39 6.36 9.12 -74.05 -0.68 5.69 16 28 H 0.09 1.52 8.03 -2.39 -0.02 1.50 16 29 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.06 1.69 7.99 -2.39 -0.02 1.68 16 Total: -1.00 -69.65 282.46 -4.31 -73.96 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: -0.53 Total: 25.87 kcal Atomic # 6 Polarization: -46.05 SS G_CDS: 2.96 Total: -43.09 kcal Atomic # 7 Polarization: -87.96 SS G_CDS: -0.60 Total: -88.56 kcal Atomic # 8 Polarization: -133.17 SS G_CDS: -7.73 Total: -140.90 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 1.82 Total: 42.41 kcal Atomic # 16 Polarization: 130.55 SS G_CDS: -0.24 Total: 130.31 kcal Total: -69.65 -4.31 -73.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193002764.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.274 kcal (2) G-P(sol) polarization free energy of solvation -69.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds