Wall clock time and date at job start Mon Mar 30 2020 00:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86799 * 120.00045 * 2 1 4 4 H 1.48501 * 109.46645 * 270.00070 * 3 2 1 5 5 H 1.48496 * 109.47150 * 30.00081 * 3 2 1 6 6 H 1.48500 * 109.46990 * 150.00251 * 3 2 1 7 7 C 1.37874 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00015 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00511 * 0.02562 * 7 2 1 10 10 O 1.42097 * 106.40142 * 66.45770 * 9 7 2 11 11 O 1.42107 * 106.39940 * 293.53795 * 9 7 2 12 12 N 1.65596 * 107.21972 * 180.02562 * 9 7 2 13 13 C 1.46505 * 120.00005 * 64.99603 * 12 9 7 14 14 H 1.08999 * 109.47397 * 335.00429 * 13 12 9 15 15 C 1.53006 * 109.46889 * 95.00316 * 13 12 9 16 16 O 1.42904 * 109.47100 * 64.99825 * 15 13 12 17 17 C 1.52999 * 109.47215 * 214.99654 * 13 12 9 18 18 H 1.08997 * 110.80904 * 297.83467 * 17 13 12 19 19 C 1.54806 * 110.90888 * 174.15760 * 17 13 12 20 20 C 1.54099 * 104.19470 * 220.92551 * 19 17 13 21 21 O 1.43889 * 107.37252 * 358.10337 * 20 19 17 22 22 C 1.44388 * 106.89814 * 26.27302 * 21 20 19 23 23 H 0.96993 * 119.99991 * 0.02562 * 1 2 3 24 24 H 0.96998 * 120.00426 * 245.00016 * 12 9 7 25 25 H 1.08994 * 109.46908 * 184.99982 * 15 13 12 26 26 H 1.08998 * 109.46920 * 304.99914 * 15 13 12 27 27 H 0.96705 * 113.99512 * 180.02562 * 16 15 13 28 28 H 1.09002 * 110.48575 * 339.60669 * 19 17 13 29 29 H 1.09005 * 110.48375 * 102.24982 * 19 17 13 30 30 H 1.09001 * 109.87936 * 117.39322 * 20 19 17 31 31 H 1.09001 * 109.88030 * 238.55007 * 20 19 17 32 32 H 1.09002 * 110.61854 * 201.57804 * 22 21 20 33 33 H 1.09000 * 110.62045 * 78.73713 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4519 -2.7956 -1.2494 11 8 0.4510 -2.7950 1.2501 12 7 2.2483 -3.9354 0.0019 13 6 3.1385 -4.1083 1.1526 14 1 3.2446 -3.1581 1.6759 15 6 2.5466 -5.1509 2.1033 16 8 2.5155 -6.4238 1.4546 17 6 4.5112 -4.5803 0.6690 18 1 4.4357 -5.5491 0.1751 19 6 5.5214 -4.6339 1.8408 20 6 6.8268 -4.0773 1.2401 21 8 6.5732 -3.7898 -0.1467 22 6 5.1581 -3.5301 -0.2696 23 1 -0.4850 0.8400 -0.0004 24 1 2.3178 -4.5329 -0.7590 25 1 3.1620 -5.2152 3.0005 26 1 1.5332 -4.8582 2.3779 27 1 2.1509 -7.1343 1.9999 28 1 5.1828 -4.0064 2.6653 29 1 5.6632 -5.6616 2.1755 30 1 7.1132 -3.1626 1.7592 31 1 7.6206 -4.8192 1.3269 32 1 4.8283 -3.6792 -1.2977 33 1 4.9228 -2.5197 0.0650 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193002766.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:25 Heat of formation + Delta-G solvation = -195.844835 kcal Electronic energy + Delta-G solvation = -19460.628175 eV Core-core repulsion = 16226.521267 eV Total energy + Delta-G solvation = -3234.106908 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.086 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.49558 -37.08359 -35.20568 -34.50763 -33.95611 -33.11472 -31.53319 -28.89011 -27.51261 -26.16330 -22.70568 -22.24673 -20.18860 -18.99188 -17.65423 -16.94031 -16.50693 -16.27308 -15.90035 -15.06822 -14.82381 -14.62731 -14.22343 -13.88614 -13.79367 -13.36347 -13.00360 -12.07746 -12.05522 -11.86513 -11.63630 -11.42326 -11.23769 -11.19377 -10.73824 -10.62839 -10.50934 -10.31470 -10.28243 -10.20020 -9.65798 -9.51339 -9.26963 -9.02445 -8.53704 -6.72642 -5.35273 2.31938 3.05254 3.12518 3.18081 4.02645 4.09114 4.43448 4.55763 4.62800 4.84338 4.87327 5.03145 5.13859 5.42909 5.47960 5.58102 5.65748 5.77023 5.80162 5.84978 5.88668 5.98975 6.11330 6.15891 6.37134 6.53580 6.87463 6.99594 7.29978 7.80213 7.89996 7.96842 8.86467 10.21509 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.019107 B = 0.008615 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.046879 B = 3249.227046 C = 4219.368177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.134 3.866 3 Si 0.918 3.082 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.262 1.262 7 C -1.022 5.022 8 H 0.102 0.898 9 S 2.714 3.286 10 O -1.006 7.006 11 O -1.008 7.008 12 N -1.126 6.126 13 C 0.176 3.824 14 H 0.101 0.899 15 C 0.056 3.944 16 O -0.567 6.567 17 C -0.120 4.120 18 H 0.097 0.903 19 C -0.150 4.150 20 C 0.047 3.953 21 O -0.383 6.383 22 C 0.048 3.952 23 H 0.291 0.709 24 H 0.405 0.595 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.372 0.628 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.913 -8.004 5.061 13.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.084 4.084 3 Si 0.742 3.258 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.186 1.186 7 C -1.155 5.155 8 H 0.120 0.880 9 S 2.813 3.187 10 O -0.997 6.997 11 O -0.998 6.998 12 N -0.879 5.879 13 C 0.067 3.933 14 H 0.119 0.881 15 C -0.023 4.023 16 O -0.372 6.372 17 C -0.140 4.140 18 H 0.116 0.884 19 C -0.188 4.188 20 C -0.030 4.030 21 O -0.302 6.302 22 C -0.028 4.028 23 H 0.101 0.899 24 H 0.236 0.764 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.218 0.782 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.180 -7.571 4.568 12.746 hybrid contribution 0.580 0.673 0.403 0.976 sum 9.760 -6.898 4.972 12.944 Atomic orbital electron populations 1.69899 1.06792 1.30744 1.39964 1.24729 0.94426 1.00775 0.88478 0.86193 0.80150 0.80159 0.79262 1.19156 1.20011 1.18637 1.30578 1.06015 1.11879 1.67049 0.87970 1.00468 0.72159 0.73168 0.72870 1.93376 1.73091 1.87613 1.45577 1.93350 1.72882 1.87576 1.45974 1.55995 1.55137 1.50605 1.26176 1.20601 0.88104 0.97634 0.86976 0.88095 1.22870 1.01097 0.84006 0.94368 1.86461 1.86885 1.18660 1.45164 1.22924 0.93920 1.00829 0.96298 0.88434 1.22976 0.94921 1.02261 0.98680 1.23146 0.97378 0.99478 0.83000 1.88873 1.25159 1.90972 1.25223 1.23712 0.79590 0.98405 1.01076 0.89875 0.76361 0.93480 0.91580 0.78227 0.90382 0.90432 0.92548 0.90330 0.88587 0.91137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.50 13.19 55.43 0.73 -23.77 16 2 C 0.13 3.66 5.46 -17.82 -0.10 3.57 16 3 Si 0.92 20.24 29.54 -169.99 -5.02 15.22 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 7 C -1.02 -27.09 9.58 30.60 0.29 -26.79 16 8 H 0.10 2.44 7.31 -52.49 -0.38 2.06 16 9 S 2.71 69.89 4.93 -107.50 -0.53 69.36 16 10 O -1.01 -29.31 18.02 -57.17 -1.03 -30.34 16 11 O -1.01 -28.25 17.22 -57.17 -0.98 -29.24 16 12 N -1.13 -21.75 5.11 -4.89 -0.02 -21.78 16 13 C 0.18 2.88 1.98 -67.93 -0.13 2.74 16 14 H 0.10 1.70 7.81 -51.93 -0.41 1.30 16 15 C 0.06 0.82 6.65 37.16 0.25 1.07 16 16 O -0.57 -7.58 12.73 -35.23 -0.45 -8.03 16 17 C -0.12 -1.67 2.58 -88.61 -0.23 -1.90 16 18 H 0.10 1.38 7.56 -51.93 -0.39 0.99 16 19 C -0.15 -1.71 5.83 -25.21 -0.15 -1.86 16 20 C 0.05 0.56 7.70 37.73 0.29 0.85 16 21 O -0.38 -5.84 11.54 -35.23 -0.41 -6.25 16 22 C 0.05 0.74 6.87 38.21 0.26 1.00 16 23 H 0.29 7.59 8.31 -40.82 -0.34 7.26 16 24 H 0.41 7.13 8.84 -34.47 -0.30 6.82 16 25 H 0.05 0.55 7.62 -51.93 -0.40 0.16 16 26 H 0.07 1.11 7.58 -51.93 -0.39 0.72 16 27 H 0.37 3.28 9.12 45.56 0.42 3.70 16 28 H 0.08 0.83 7.80 -51.93 -0.41 0.42 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 33 H 0.07 1.14 7.55 -51.93 -0.39 0.74 16 LS Contribution 292.32 15.07 4.41 4.41 Total: -1.00 -35.26 292.32 -6.31 -41.56 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -3.48 Total: 10.18 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: 0.49 Total: -21.33 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 0.71 Total: -45.54 kcal Atomic # 8 Polarization: -70.98 SS G_CDS: -2.87 Total: -73.85 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 69.89 SS G_CDS: -0.53 Total: 69.36 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -35.26 -6.31 -41.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193002766.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.281 kcal (2) G-P(sol) polarization free energy of solvation -35.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds