Wall clock time and date at job start Mon Mar 30 2020 00:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86799 * 120.00045 * 2 1 4 4 H 1.48501 * 109.46645 * 270.00070 * 3 2 1 5 5 H 1.48496 * 109.47150 * 30.00081 * 3 2 1 6 6 H 1.48500 * 109.46990 * 150.00251 * 3 2 1 7 7 C 1.37874 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00015 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00511 * 0.02562 * 7 2 1 10 10 O 1.42097 * 106.40142 * 66.45770 * 9 7 2 11 11 O 1.42107 * 106.39940 * 293.53795 * 9 7 2 12 12 N 1.65596 * 107.21972 * 180.02562 * 9 7 2 13 13 C 1.46505 * 120.00005 * 64.99603 * 12 9 7 14 14 H 1.08999 * 109.47397 * 335.00429 * 13 12 9 15 15 C 1.53006 * 109.46889 * 95.00316 * 13 12 9 16 16 O 1.42904 * 109.47100 * 64.99825 * 15 13 12 17 17 C 1.52999 * 109.47215 * 214.99654 * 13 12 9 18 18 H 1.08997 * 110.80904 * 297.83467 * 17 13 12 19 19 C 1.54806 * 110.90888 * 174.15760 * 17 13 12 20 20 C 1.54099 * 104.19470 * 220.92551 * 19 17 13 21 21 O 1.43889 * 107.37252 * 358.10337 * 20 19 17 22 22 C 1.44388 * 106.89814 * 26.27302 * 21 20 19 23 23 H 0.96993 * 119.99991 * 0.02562 * 1 2 3 24 24 H 0.96998 * 120.00426 * 245.00016 * 12 9 7 25 25 H 1.08994 * 109.46908 * 184.99982 * 15 13 12 26 26 H 1.08998 * 109.46920 * 304.99914 * 15 13 12 27 27 H 0.96705 * 113.99512 * 180.02562 * 16 15 13 28 28 H 1.09002 * 110.48575 * 339.60669 * 19 17 13 29 29 H 1.09005 * 110.48375 * 102.24982 * 19 17 13 30 30 H 1.09001 * 109.87936 * 117.39322 * 20 19 17 31 31 H 1.09001 * 109.88030 * 238.55007 * 20 19 17 32 32 H 1.09002 * 110.61854 * 201.57804 * 22 21 20 33 33 H 1.09000 * 110.62045 * 78.73713 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4519 -2.7956 -1.2494 11 8 0.4510 -2.7950 1.2501 12 7 2.2483 -3.9354 0.0019 13 6 3.1385 -4.1083 1.1526 14 1 3.2446 -3.1581 1.6759 15 6 2.5466 -5.1509 2.1033 16 8 2.5155 -6.4238 1.4546 17 6 4.5112 -4.5803 0.6690 18 1 4.4357 -5.5491 0.1751 19 6 5.5214 -4.6339 1.8408 20 6 6.8268 -4.0773 1.2401 21 8 6.5732 -3.7898 -0.1467 22 6 5.1581 -3.5301 -0.2696 23 1 -0.4850 0.8400 -0.0004 24 1 2.3178 -4.5329 -0.7590 25 1 3.1620 -5.2152 3.0005 26 1 1.5332 -4.8582 2.3779 27 1 2.1509 -7.1343 1.9999 28 1 5.1828 -4.0064 2.6653 29 1 5.6632 -5.6616 2.1755 30 1 7.1132 -3.1626 1.7592 31 1 7.6206 -4.8192 1.3269 32 1 4.8283 -3.6792 -1.2977 33 1 4.9228 -2.5197 0.0650 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193002766.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:24 Heat of formation + Delta-G solvation = -228.376242 kcal Electronic energy + Delta-G solvation = -19462.038843 eV Core-core repulsion = 16226.521267 eV Total energy + Delta-G solvation = -3235.517576 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.086 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.60594 -38.25461 -37.32793 -36.11195 -35.78908 -35.16522 -32.75058 -30.00052 -28.74677 -28.24484 -23.88996 -23.27532 -21.49118 -20.85318 -19.34699 -18.45267 -17.95545 -17.72599 -17.21514 -16.80228 -16.21438 -15.93214 -15.84556 -15.43633 -15.14102 -14.79661 -14.08167 -13.98241 -13.49297 -13.30902 -13.04609 -12.98334 -12.82842 -12.49073 -12.40990 -12.34738 -12.29541 -12.04846 -11.82954 -11.47872 -11.24775 -10.96413 -10.78401 -10.59260 -10.17467 -8.74967 -7.47363 0.36623 1.34203 1.35306 1.50375 2.20642 2.59067 2.92923 3.02707 3.46195 3.60215 3.73946 3.80368 4.00128 4.21739 4.25952 4.37609 4.45288 4.52918 4.54297 4.64644 4.84066 4.92586 4.93244 4.97504 5.04805 5.24060 5.28015 5.46328 5.91855 5.94616 6.38498 6.79634 6.97646 8.21487 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.019107 B = 0.008615 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.046879 B = 3249.227046 C = 4219.368177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.985 3.015 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.245 1.245 7 C -1.036 5.036 8 H 0.122 0.878 9 S 2.720 3.280 10 O -1.049 7.049 11 O -1.039 7.039 12 N -1.112 6.112 13 C 0.163 3.837 14 H 0.094 0.906 15 C 0.061 3.939 16 O -0.576 6.576 17 C -0.109 4.109 18 H 0.099 0.901 19 C -0.143 4.143 20 C 0.039 3.961 21 O -0.401 6.401 22 C 0.044 3.956 23 H 0.298 0.702 24 H 0.414 0.586 25 H 0.085 0.915 26 H 0.037 0.963 27 H 0.393 0.607 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.228 -8.224 6.094 15.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.804 3.196 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.168 1.168 7 C -1.170 5.170 8 H 0.141 0.859 9 S 2.821 3.179 10 O -1.040 7.040 11 O -1.028 7.028 12 N -0.869 5.869 13 C 0.056 3.944 14 H 0.112 0.888 15 C -0.019 4.019 16 O -0.384 6.384 17 C -0.129 4.129 18 H 0.117 0.883 19 C -0.182 4.182 20 C -0.037 4.037 21 O -0.321 6.321 22 C -0.033 4.033 23 H 0.108 0.892 24 H 0.247 0.753 25 H 0.103 0.897 26 H 0.055 0.945 27 H 0.242 0.758 28 H 0.106 0.894 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.491 -7.834 5.615 14.998 hybrid contribution -0.100 0.623 0.100 0.639 sum 11.391 -7.211 5.715 14.643 Atomic orbital electron populations 1.69997 1.08777 1.32265 1.41525 1.25954 0.95274 1.05222 0.87593 0.85192 0.79341 0.75143 0.79938 1.18279 1.18803 1.16770 1.30906 1.07189 1.12334 1.66547 0.85946 0.99923 0.72621 0.73885 0.71512 1.93309 1.75035 1.88454 1.47177 1.93303 1.74413 1.88245 1.46875 1.55392 1.54634 1.49174 1.27736 1.20936 0.88967 0.98359 0.86160 0.88842 1.22704 1.00026 0.84106 0.95033 1.86408 1.87114 1.18716 1.46118 1.22799 0.92772 1.00120 0.97255 0.88287 1.23003 0.93521 1.03950 0.97692 1.23401 0.98248 1.00637 0.81434 1.88855 1.24734 1.91114 1.27398 1.23678 0.80239 0.98187 1.01170 0.89176 0.75252 0.89713 0.94465 0.75767 0.89360 0.88157 0.91789 0.88120 0.89133 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.85 13.19 21.45 0.28 -52.57 16 2 C 0.07 3.96 5.46 84.65 0.46 4.42 16 3 Si 0.99 40.62 29.54 68.60 2.03 42.65 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 6 H -0.24 -9.30 7.11 99.48 0.71 -8.59 16 7 C -1.04 -55.15 9.58 67.73 0.65 -54.50 16 8 H 0.12 5.78 7.31 -2.91 -0.02 5.76 16 9 S 2.72 143.21 4.93 -56.49 -0.28 142.94 16 10 O -1.05 -63.10 18.02 -128.00 -2.31 -65.41 16 11 O -1.04 -59.82 17.22 -128.00 -2.20 -62.03 16 12 N -1.11 -43.00 5.11 -169.37 -0.87 -43.87 16 13 C 0.16 5.16 1.98 44.99 0.09 5.25 16 14 H 0.09 3.08 7.81 -2.39 -0.02 3.06 16 15 C 0.06 1.67 6.65 71.98 0.48 2.15 16 16 O -0.58 -14.07 12.73 -148.98 -1.90 -15.96 16 17 C -0.11 -2.83 2.58 -9.49 -0.02 -2.85 16 18 H 0.10 2.57 7.56 -2.39 -0.02 2.55 16 19 C -0.14 -2.77 5.83 31.58 0.18 -2.59 16 20 C 0.04 0.81 7.70 72.35 0.56 1.36 16 21 O -0.40 -11.47 11.54 -148.98 -1.72 -13.19 16 22 C 0.04 1.28 6.87 72.67 0.50 1.78 16 23 H 0.30 15.86 8.31 -92.71 -0.77 15.09 16 24 H 0.41 14.58 8.84 -96.75 -0.85 13.72 16 25 H 0.08 1.70 7.62 -2.39 -0.02 1.68 16 26 H 0.04 1.24 7.58 -2.39 -0.02 1.22 16 27 H 0.39 5.91 9.12 -74.05 -0.68 5.23 16 28 H 0.09 1.55 7.80 -2.39 -0.02 1.53 16 29 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.06 1.82 7.55 -2.39 -0.02 1.80 16 Total: -1.00 -77.04 292.32 -4.45 -81.50 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: -0.39 Total: 30.92 kcal Atomic # 6 Polarization: -47.87 SS G_CDS: 2.90 Total: -44.98 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -0.58 Total: -96.43 kcal Atomic # 8 Polarization: -148.47 SS G_CDS: -8.13 Total: -156.60 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Atomic # 16 Polarization: 143.21 SS G_CDS: -0.28 Total: 142.94 kcal Total: -77.04 -4.45 -81.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193002766.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.879 kcal (2) G-P(sol) polarization free energy of solvation -77.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds