Wall clock time and date at job start Mon Mar 30 2020 00:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00205 * 2 1 4 4 H 1.48503 * 109.47188 * 270.00006 * 3 2 1 5 5 H 1.48500 * 109.47124 * 29.99528 * 3 2 1 6 6 H 1.48496 * 109.47526 * 149.99555 * 3 2 1 7 7 C 1.37882 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00281 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99961 * 359.97438 * 7 2 1 10 10 O 1.42101 * 106.40148 * 66.46175 * 9 7 2 11 11 O 1.42098 * 106.40479 * 293.54570 * 9 7 2 12 12 N 1.65592 * 107.21952 * 180.02562 * 9 7 2 13 13 C 1.46505 * 119.99876 * 65.00229 * 12 9 7 14 14 H 1.09000 * 109.47120 * 335.00217 * 13 12 9 15 15 C 1.53006 * 109.46997 * 94.99826 * 13 12 9 16 16 H 1.09000 * 109.46866 * 60.00236 * 15 13 12 17 17 O 1.42896 * 109.47265 * 300.00362 * 15 13 12 18 18 C 1.52997 * 109.46974 * 180.02562 * 15 13 12 19 19 C 1.53002 * 109.47092 * 300.00168 * 18 15 13 20 20 C 1.52996 * 109.47343 * 60.00063 * 19 18 15 21 21 C 1.52997 * 109.46975 * 300.00008 * 20 19 18 22 22 H 1.09000 * 109.47140 * 299.99612 * 21 20 19 23 23 O 1.42905 * 109.46921 * 179.97438 * 21 20 19 24 24 H 0.96997 * 120.00307 * 0.02562 * 1 2 3 25 25 H 0.97001 * 120.00183 * 245.00287 * 12 9 7 26 26 H 0.96698 * 114.00134 * 179.97438 * 17 15 13 27 27 H 1.09000 * 109.47140 * 60.00393 * 18 15 13 28 28 H 1.09002 * 109.47045 * 180.02562 * 18 15 13 29 29 H 1.09004 * 109.46930 * 180.02562 * 19 18 15 30 30 H 1.09004 * 109.47059 * 299.99666 * 19 18 15 31 31 H 1.09001 * 109.47372 * 179.97438 * 20 19 18 32 32 H 1.09000 * 109.46870 * 59.99786 * 20 19 18 33 33 H 0.96696 * 114.00036 * 60.00010 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1236 -2.7200 0.0019 10 8 0.4510 -2.7961 -1.2475 11 8 0.4518 -2.7944 1.2519 12 7 2.2483 -3.9354 0.0030 13 6 3.1393 -4.1078 1.1531 14 1 3.2458 -3.1573 1.6759 15 6 2.5480 -5.1499 2.1046 16 1 2.4415 -6.1003 1.5818 17 8 1.2662 -4.7089 2.5569 18 6 3.4782 -5.3295 3.3060 19 6 4.8508 -5.8013 2.8221 20 6 5.4421 -4.7593 1.8706 21 6 4.5119 -4.5797 0.6693 22 1 4.4059 -5.5303 0.1465 23 8 5.0640 -3.6060 -0.2192 24 1 -0.4850 0.8400 -0.0004 25 1 2.3172 -4.5331 -0.7578 26 1 0.8313 -5.3223 3.1650 27 1 3.5842 -4.3789 3.8287 28 1 3.0571 -6.0722 3.9837 29 1 5.5134 -5.9297 3.6781 30 1 4.7448 -6.7520 2.2994 31 1 6.4202 -5.0953 1.5263 32 1 5.5482 -3.8087 2.3934 33 1 5.9359 -3.8394 -0.5659 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193008612.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:54 Heat of formation + Delta-G solvation = -236.622320 kcal Electronic energy + Delta-G solvation = -19761.546912 eV Core-core repulsion = 16525.671759 eV Total energy + Delta-G solvation = -3235.875153 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.48065 -37.57812 -37.14623 -35.90407 -35.36520 -35.22364 -34.85294 -29.82930 -29.03622 -28.19694 -23.42258 -23.05690 -21.40535 -20.64775 -19.20338 -18.52328 -18.00874 -17.73280 -17.45595 -16.79532 -15.89395 -15.47496 -15.34584 -15.20872 -14.71242 -14.55872 -14.25723 -13.94141 -13.45744 -13.26591 -13.10138 -13.00233 -12.57215 -12.36122 -12.33062 -12.25498 -12.07985 -11.80841 -11.74470 -11.29341 -11.21819 -10.85972 -10.81264 -10.59987 -10.08423 -8.70778 -7.40828 0.53168 1.30740 1.32218 1.48202 2.22443 2.60909 2.91558 3.10217 3.68879 3.80884 3.91132 3.98801 4.12229 4.19992 4.20934 4.33668 4.42056 4.54397 4.69642 4.79474 4.88351 5.11462 5.15269 5.16573 5.22676 5.27515 5.38149 5.53416 5.96860 6.47593 6.83136 7.03549 7.15375 8.25250 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.023124 B = 0.008261 C = 0.007287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.550162 B = 3388.792906 C = 3841.700273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.068 3.932 3 Si 0.987 3.013 4 H -0.254 1.254 5 H -0.259 1.259 6 H -0.252 1.252 7 C -1.042 5.042 8 H 0.109 0.891 9 S 2.723 3.277 10 O -1.059 7.059 11 O -1.007 7.007 12 N -1.108 6.108 13 C 0.162 3.838 14 H 0.060 0.940 15 C 0.083 3.917 16 H 0.074 0.926 17 O -0.560 6.560 18 C -0.149 4.149 19 C -0.109 4.109 20 C -0.149 4.149 21 C 0.108 3.892 22 H 0.083 0.917 23 O -0.579 6.579 24 H 0.297 0.703 25 H 0.409 0.591 26 H 0.381 0.619 27 H 0.056 0.944 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.144 -12.347 5.676 19.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.805 3.195 4 H -0.178 1.178 5 H -0.183 1.183 6 H -0.175 1.175 7 C -1.174 5.174 8 H 0.127 0.873 9 S 2.823 3.177 10 O -1.050 7.050 11 O -0.996 6.996 12 N -0.864 5.864 13 C 0.054 3.946 14 H 0.078 0.922 15 C 0.022 3.978 16 H 0.092 0.908 17 O -0.365 6.365 18 C -0.188 4.188 19 C -0.147 4.147 20 C -0.187 4.187 21 C 0.047 3.953 22 H 0.101 0.899 23 O -0.387 6.387 24 H 0.107 0.893 25 H 0.242 0.758 26 H 0.229 0.771 27 H 0.075 0.925 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.078 0.922 33 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 12.578 -11.475 5.584 17.918 hybrid contribution 0.791 0.334 -0.242 0.892 sum 13.369 -11.142 5.342 18.205 Atomic orbital electron populations 1.70000 1.08649 1.32029 1.42091 1.25999 0.95383 1.05271 0.87708 0.85187 0.79108 0.75127 0.80037 1.17849 1.18312 1.17523 1.31032 1.06819 1.13542 1.66042 0.87272 0.99852 0.72550 0.73669 0.71657 1.93281 1.75102 1.88640 1.47936 1.93377 1.73412 1.87457 1.45371 1.55284 1.54675 1.49408 1.27002 1.20845 0.88980 0.99155 0.85639 0.92207 1.22335 0.84646 0.96137 0.94671 0.90806 1.87078 1.31854 1.50050 1.67560 1.22312 0.96636 1.02513 0.97320 1.21456 0.94918 0.98552 0.99743 1.22314 0.99667 1.00577 0.96169 1.22002 0.90623 0.91511 0.91142 0.89878 1.86659 1.39115 1.47987 1.64932 0.89309 0.75787 0.77147 0.92532 0.88916 0.89155 0.89690 0.88009 0.92246 0.75570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.85 13.19 21.45 0.28 -56.57 16 2 C 0.07 4.09 5.46 84.66 0.46 4.56 16 3 Si 0.99 44.64 29.54 68.60 2.03 46.67 16 4 H -0.25 -10.83 7.11 99.48 0.71 -10.13 16 5 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.25 -10.78 7.11 99.48 0.71 -10.08 16 7 C -1.04 -62.85 9.58 67.74 0.65 -62.20 16 8 H 0.11 6.21 7.81 -2.91 -0.02 6.19 16 9 S 2.72 158.63 4.93 -56.49 -0.28 158.35 16 10 O -1.06 -68.59 18.02 -128.00 -2.31 -70.90 16 11 O -1.01 -63.27 15.10 -119.15 -1.80 -65.07 16 12 N -1.11 -47.89 5.23 -169.37 -0.89 -48.78 16 13 C 0.16 5.83 2.13 44.99 0.10 5.93 16 14 H 0.06 2.59 7.85 -2.39 -0.02 2.57 16 15 C 0.08 2.46 3.12 30.60 0.10 2.56 16 16 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 17 O -0.56 -21.24 10.48 -127.43 -1.34 -22.57 16 18 C -0.15 -3.15 5.54 30.59 0.17 -2.98 16 19 C -0.11 -1.62 5.92 30.59 0.18 -1.44 16 20 C -0.15 -2.68 5.54 30.59 0.17 -2.51 16 21 C 0.11 2.70 3.05 30.59 0.09 2.79 16 22 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 23 O -0.58 -16.38 13.18 -148.98 -1.96 -18.35 16 24 H 0.30 16.88 8.31 -92.71 -0.77 16.11 16 25 H 0.41 15.41 8.84 -96.75 -0.86 14.56 16 26 H 0.38 10.22 9.08 -74.06 -0.67 9.55 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.39 6.47 9.08 -74.06 -0.67 5.79 16 Total: -1.00 -90.03 287.45 -5.39 -95.42 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: -1.05 Total: 35.08 kcal Atomic # 6 Polarization: -55.21 SS G_CDS: 1.92 Total: -53.29 kcal Atomic # 7 Polarization: -104.74 SS G_CDS: -0.60 Total: -105.34 kcal Atomic # 8 Polarization: -169.48 SS G_CDS: -7.41 Total: -176.89 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: 158.63 SS G_CDS: -0.28 Total: 158.35 kcal Total: -90.03 -5.39 -95.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193008612.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.198 kcal (2) G-P(sol) polarization free energy of solvation -90.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds