Wall clock time and date at job start Mon Mar 30 2020 00:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 119.99823 * 2 1 4 4 H 1.48507 * 109.46839 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47181 * 299.99864 * 3 2 1 6 6 H 1.48497 * 109.47665 * 60.00022 * 3 2 1 7 7 C 1.38814 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00274 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99655 * 0.02562 * 7 2 1 10 10 C 1.47015 * 125.65004 * 359.97135 * 9 7 2 11 11 C 1.54325 * 107.27065 * 178.98904 * 10 9 7 12 12 C 1.55157 * 102.94374 * 337.80787 * 11 10 9 13 13 H 1.09000 * 111.00346 * 277.43176 * 12 11 10 14 14 O 1.42898 * 111.00984 * 153.57598 * 12 11 10 15 15 C 1.42897 * 114.00181 * 150.00200 * 14 12 11 16 16 C 1.53002 * 109.47022 * 180.02562 * 15 14 12 17 17 S 1.81394 * 109.47079 * 179.97438 * 16 15 14 18 18 O 1.42100 * 110.54313 * 291.61835 * 17 16 15 19 19 O 1.42104 * 110.54480 * 68.37198 * 17 16 15 20 20 O 1.52208 * 104.44987 * 179.97438 * 17 16 15 21 21 C 1.47425 * 125.64112 * 180.02562 * 9 7 2 22 22 H 0.97001 * 120.00422 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.88350 * 59.57113 * 10 9 7 24 24 H 1.08997 * 110.01690 * 298.47629 * 10 9 7 25 25 H 1.08996 * 110.72124 * 219.44887 * 11 10 9 26 26 H 1.08993 * 110.72326 * 96.17079 * 11 10 9 27 27 H 1.09000 * 109.47105 * 299.99915 * 15 14 12 28 28 H 1.08996 * 109.47474 * 60.00235 * 15 14 12 29 29 H 1.09000 * 109.46768 * 299.99700 * 16 15 14 30 30 H 1.08996 * 109.47148 * 59.99614 * 16 15 14 31 31 H 0.96698 * 113.99966 * 179.97438 * 20 17 16 32 32 H 1.08999 * 110.36633 * 85.25018 * 21 9 7 33 33 H 1.08996 * 110.37033 * 322.91399 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1375 -2.5328 0.0006 11 6 -0.4485 -4.0441 -0.0254 12 6 0.8519 -4.6565 -0.6098 13 1 0.8569 -4.5972 -1.6981 14 8 1.0248 -6.0056 -0.1716 15 6 1.7243 -6.8339 -1.1024 16 6 1.8500 -8.2482 -0.5323 17 16 2.7374 -9.2999 -1.7142 18 8 1.9498 -9.5182 -2.8766 19 8 4.0971 -8.8993 -1.8152 20 8 2.7973 -10.6628 -1.0393 21 6 1.9335 -3.7311 0.0016 22 1 -0.4851 0.8400 -0.0004 23 1 -0.5576 -2.0526 -0.8832 24 1 -0.5568 -2.0836 0.9009 25 1 -1.2984 -4.2519 -0.6754 26 1 -0.6317 -4.4176 0.9820 27 1 1.1739 -6.8692 -2.0425 28 1 2.7184 -6.4232 -1.2786 29 1 2.4003 -8.2132 0.4080 30 1 0.8558 -8.6587 -0.3564 31 1 3.2498 -11.3402 -1.5604 32 1 2.1662 -4.0414 1.0203 33 1 2.8330 -3.7409 -0.6138 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224571369.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:35 Heat of formation + Delta-G solvation = -139.670234 kcal Electronic energy + Delta-G solvation = -18223.035357 eV Core-core repulsion = 14991.364363 eV Total energy + Delta-G solvation = -3231.670995 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.086 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.74813 -38.50996 -37.50777 -36.37984 -36.16433 -32.63780 -31.49046 -29.14682 -27.09635 -24.55644 -23.80506 -21.18082 -20.43283 -20.09220 -18.77563 -17.79771 -17.03987 -16.93153 -16.42627 -15.61185 -15.13627 -14.72857 -14.44441 -14.03688 -13.59451 -13.26344 -13.03479 -12.69620 -12.51930 -12.39073 -12.37119 -12.13828 -11.89103 -11.51588 -11.35852 -11.02053 -10.92626 -10.77480 -10.24747 -10.07529 -9.83673 -9.74504 -9.22257 -8.61944 -6.86196 -5.72987 -3.07293 -0.16930 2.25938 3.13984 3.39758 3.45167 3.47820 3.74824 3.97476 4.41111 4.52088 4.56519 5.02891 5.23923 5.28365 5.40337 5.43050 5.52056 5.59410 5.70325 5.79356 6.19577 6.42687 6.48797 6.63023 6.64825 7.44007 7.53988 7.58335 7.80434 8.23118 9.19677 9.79643 10.44748 11.38821 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.045858 B = 0.003614 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.428375 B = 7745.842641 C = 8111.168527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.080 0.920 9 N -0.604 5.604 10 C 0.178 3.822 11 C -0.139 4.139 12 C 0.067 3.933 13 H 0.072 0.928 14 O -0.369 6.369 15 C 0.074 3.926 16 C -0.615 4.615 17 S 2.644 3.356 18 O -0.968 6.968 19 O -0.966 6.966 20 O -0.898 6.898 21 C 0.118 3.882 22 H 0.252 0.748 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.460 0.540 32 H 0.029 0.971 33 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.936 -20.527 -2.418 20.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.357 4.357 8 H 0.097 0.903 9 N -0.332 5.332 10 C 0.053 3.947 11 C -0.177 4.177 12 C 0.009 3.991 13 H 0.090 0.910 14 O -0.287 6.287 15 C -0.005 4.005 16 C -0.744 4.744 17 S 2.735 3.265 18 O -0.966 6.966 19 O -0.964 6.964 20 O -0.767 6.767 21 C -0.009 4.009 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.164 0.836 30 H 0.162 0.838 31 H 0.329 0.671 32 H 0.047 0.953 33 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.896 -20.372 -2.390 20.715 hybrid contribution 0.377 0.939 0.067 1.014 sum 3.273 -19.434 -2.323 19.844 Atomic orbital electron populations 1.69963 1.04914 1.25017 1.57096 1.24821 0.95758 0.97735 1.02141 0.86010 0.78717 0.83579 0.77243 1.20464 1.21716 1.21711 1.19127 0.90538 0.82225 1.43834 0.90255 1.44366 1.01745 0.99714 1.87389 1.21175 0.84408 0.87586 1.01515 1.23024 0.95153 0.98903 1.00664 1.23569 0.97913 0.79561 0.98092 0.90983 1.87916 1.76303 1.21446 1.43079 1.21968 0.98293 0.87478 0.92762 1.30345 1.16271 1.09424 1.18326 1.03534 0.74776 0.74576 0.73567 1.93654 1.72773 1.83018 1.47177 1.93663 1.34517 1.82825 1.85411 1.85428 1.82571 1.41191 1.67471 1.21911 0.94456 0.86557 0.97927 0.93736 0.93258 0.93474 0.91707 0.91413 0.91691 0.91474 0.83627 0.83761 0.67093 0.95336 0.94192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.15 10.31 55.49 0.57 -26.58 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.23 -6.47 10.28 -15.06 -0.15 -6.62 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.60 -15.76 3.39 -170.07 -0.58 -16.34 16 10 C 0.18 4.36 5.37 -3.07 -0.02 4.35 16 11 C -0.14 -2.68 6.69 -24.90 -0.17 -2.85 16 12 C 0.07 1.22 3.54 -24.58 -0.09 1.13 16 13 H 0.07 1.24 7.83 -51.93 -0.41 0.84 16 14 O -0.37 -5.88 10.15 -35.23 -0.36 -6.24 16 15 C 0.07 0.89 5.78 37.16 0.21 1.10 16 16 C -0.61 -5.15 6.54 37.16 0.24 -4.90 16 17 S 2.64 19.58 5.67 -107.50 -0.61 18.97 16 18 O -0.97 -10.33 18.09 -67.03 -1.21 -11.54 16 19 O -0.97 -10.61 18.09 -67.04 -1.21 -11.82 16 20 O -0.90 -4.17 13.27 -67.56 -0.90 -5.07 16 21 C 0.12 2.53 6.97 -2.52 -0.02 2.52 16 22 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 23 H 0.05 1.31 7.38 -51.93 -0.38 0.93 16 24 H 0.05 1.27 7.50 -51.93 -0.39 0.88 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.15 1.08 8.14 -51.92 -0.42 0.65 16 30 H 0.14 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.46 0.00 9.03 67.38 0.61 0.61 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 293.51 15.07 4.42 4.42 Total: -1.00 -37.86 293.51 -8.47 -46.33 By element: Atomic # 1 Polarization: -0.18 SS G_CDS: -3.50 Total: -3.68 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -0.08 Total: -5.60 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: -0.01 Total: -42.92 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -3.68 Total: -34.68 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 19.58 SS G_CDS: -0.61 Total: 18.97 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -37.86 -8.47 -46.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224571369.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.341 kcal (2) G-P(sol) polarization free energy of solvation -37.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds