Wall clock time and date at job start Sun Mar 29 2020 23:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38294 * 119.87532 * 2 1 4 4 C 1.37949 * 120.21696 * 179.76481 * 3 2 1 5 5 C 1.39664 * 119.95539 * 0.46809 * 4 3 2 6 6 C 1.43207 * 120.12267 * 179.78874 * 5 4 3 7 7 N 4.80184 * 137.01428 * 359.97438 * 3 1 2 8 8 C 1.39537 * 119.75520 * 359.51216 * 5 4 3 9 9 C 1.38485 * 119.78659 * 0.25039 * 8 5 4 10 10 O 1.35905 * 119.98203 * 179.97438 * 9 8 5 11 11 C 1.42896 * 116.99987 * 356.71310 * 10 9 8 12 12 H 1.09003 * 109.47142 * 26.95346 * 11 10 9 13 13 C 1.50707 * 109.47187 * 146.94872 * 11 10 9 14 14 H 1.08002 * 119.99328 * 359.97438 * 13 11 10 15 15 C 1.37877 * 120.00011 * 180.02562 * 13 11 10 16 16 N 1.31509 * 120.00140 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 119.99642 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47067 * 60.00083 * 17 15 13 19 19 H 1.48500 * 109.46869 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47258 * 299.99975 * 17 15 13 21 21 C 1.53002 * 109.47661 * 266.94750 * 11 10 9 22 22 Cl 1.80300 * 109.46856 * 64.99769 * 21 11 10 23 23 H 1.09004 * 109.46925 * 270.02016 * 1 2 3 24 24 H 1.08997 * 109.47398 * 30.02261 * 1 2 3 25 25 H 1.09001 * 109.46735 * 150.02476 * 1 2 3 26 26 H 1.08005 * 119.89007 * 359.97438 * 3 2 1 27 27 H 1.07999 * 120.02568 * 180.22750 * 4 3 2 28 28 H 1.07998 * 120.11065 * 180.28183 * 8 5 4 29 29 H 0.96995 * 119.99794 * 180.02562 * 16 15 13 30 30 H 1.08998 * 109.47185 * 184.99977 * 21 11 10 31 31 H 1.08995 * 109.46718 * 305.00081 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1992 0.0000 4 6 3.5753 1.2074 0.0049 5 6 4.2799 0.0015 0.0000 6 6 5.7120 0.0059 0.0005 7 7 6.8480 0.0093 0.0015 8 6 3.5834 -1.2076 0.0004 9 6 2.1985 -1.2037 0.0005 10 8 1.5161 -2.3790 0.0004 11 6 2.2896 -3.5783 -0.0727 12 1 3.2783 -3.3993 0.3499 13 6 1.6003 -4.6689 0.7062 14 1 0.6653 -4.4662 1.2073 15 6 2.1640 -5.9251 0.7799 16 7 3.3027 -6.1717 0.1701 17 14 1.3099 -7.2766 1.7460 18 1 -0.0371 -7.5210 1.1706 19 1 2.1143 -8.5227 1.6709 20 1 1.1739 -6.8606 3.1651 21 6 2.4298 -4.0065 -1.5349 22 17 3.3828 -2.7686 -2.4349 23 1 -0.3633 0.0004 1.0277 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6520 2.1323 -0.0004 27 1 4.1101 2.1457 0.0086 28 1 4.1224 -2.1434 0.0013 29 1 3.6990 -7.0555 0.2217 30 1 2.9428 -4.9669 -1.5846 31 1 1.4404 -4.0995 -1.9826 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226877831.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:12 Heat of formation + Delta-G solvation = -16.449156 kcal Electronic energy + Delta-G solvation = -17477.171013 eV Core-core repulsion = 14556.108499 eV Total energy + Delta-G solvation = -2921.062514 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.20066 -38.84390 -37.46645 -36.55794 -35.34064 -33.77434 -31.62199 -30.59536 -28.28159 -27.26187 -24.65205 -23.21474 -22.09309 -20.35710 -18.70114 -17.74053 -16.85487 -16.64165 -16.28276 -16.10900 -15.26157 -15.06611 -14.87080 -14.46674 -14.21951 -14.13240 -13.95730 -13.77448 -13.43384 -13.03848 -12.92259 -12.87248 -12.62635 -12.35874 -12.30487 -12.17340 -11.90855 -11.46444 -11.18338 -10.97167 -10.57030 -9.65918 -8.88008 -8.36605 -6.52243 -0.16675 0.57089 1.41689 1.44626 1.53741 1.56054 1.61223 1.93795 2.27550 2.71901 2.87504 2.95183 2.99838 3.92645 4.07103 4.18226 4.33565 4.36254 4.45125 4.67740 4.84248 4.86602 4.96999 5.00227 5.20803 5.31639 5.38870 5.43419 5.54834 5.65349 5.85211 5.91669 6.38846 6.48970 6.82317 7.20652 8.69576 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.019324 B = 0.006865 C = 0.006141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.653344 B = 4077.876362 C = 4558.419019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.099 4.099 3 C -0.078 4.078 4 C -0.099 4.099 5 C -0.021 4.021 6 C 0.280 3.720 7 N -0.465 5.465 8 C -0.157 4.157 9 C 0.120 3.880 10 O -0.314 6.314 11 C 0.211 3.789 12 H 0.028 0.972 13 C -0.544 4.544 14 H 0.072 0.928 15 C 0.025 3.975 16 N -0.912 5.912 17 Si 0.975 3.025 18 H -0.264 1.264 19 H -0.280 1.280 20 H -0.270 1.270 21 C -0.027 4.027 22 Cl -0.224 7.224 23 H 0.077 0.923 24 H 0.096 0.904 25 H 0.053 0.947 26 H 0.180 0.820 27 H 0.161 0.839 28 H 0.115 0.885 29 H 0.274 0.726 30 H 0.114 0.886 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.931 11.456 -0.828 12.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.101 4.101 3 C -0.095 4.095 4 C -0.120 4.120 5 C -0.025 4.025 6 C -0.034 4.034 7 N -0.141 5.141 8 C -0.179 4.179 9 C 0.074 3.926 10 O -0.228 6.228 11 C 0.156 3.844 12 H 0.045 0.955 13 C -0.582 4.582 14 H 0.090 0.910 15 C -0.176 4.176 16 N -0.549 5.549 17 Si 0.799 3.201 18 H -0.189 1.189 19 H -0.206 1.206 20 H -0.195 1.195 21 C -0.090 4.090 22 Cl -0.198 7.198 23 H 0.096 0.904 24 H 0.115 0.885 25 H 0.072 0.928 26 H 0.197 0.803 27 H 0.178 0.822 28 H 0.133 0.867 29 H 0.084 0.916 30 H 0.132 0.868 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.169 11.344 -0.927 12.121 hybrid contribution 0.025 -1.433 0.220 1.450 sum -4.144 9.911 -0.707 10.766 Atomic orbital electron populations 1.20684 0.88914 1.03422 1.03039 1.19909 0.98030 0.89996 1.02157 1.21148 0.92934 0.97634 0.97803 1.21283 0.94653 0.95997 1.00045 1.15815 0.83269 0.95014 1.08405 1.26001 0.92956 0.92197 0.92253 1.81175 1.13041 1.08997 1.10898 1.21293 0.94233 0.97835 1.04513 1.19058 0.89819 0.87535 0.96217 1.86097 1.36827 1.12738 1.87155 1.20240 0.92359 0.80510 0.91288 0.95489 1.21226 1.09434 0.94868 1.32629 0.91001 1.25727 0.95273 1.00523 0.96075 1.69887 1.18284 1.23800 1.42952 0.85322 0.78624 0.77203 0.78949 1.18869 1.20555 1.19505 1.25448 0.96507 0.93592 0.93468 1.98641 1.78039 1.63151 1.79979 0.90447 0.88519 0.92806 0.80290 0.82167 0.86723 0.91621 0.86845 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.36 9.78 71.24 0.70 -1.66 16 2 C -0.10 -2.72 5.90 -19.71 -0.12 -2.84 16 3 C -0.08 -1.57 9.67 22.21 0.21 -1.36 16 4 C -0.10 -2.23 9.75 22.55 0.22 -2.01 16 5 C -0.02 -0.66 5.73 -21.37 -0.12 -0.79 16 6 C 0.28 9.45 15.33 88.33 1.35 10.80 16 7 N -0.46 -17.18 18.54 19.01 0.35 -16.83 16 8 C -0.16 -5.82 6.74 22.64 0.15 -5.67 16 9 C 0.12 4.36 5.94 22.47 0.13 4.49 16 10 O -0.31 -13.43 8.76 -92.48 -0.81 -14.24 16 11 C 0.21 10.03 2.19 29.85 0.07 10.10 16 12 H 0.03 1.42 5.39 -2.39 -0.01 1.40 16 13 C -0.54 -27.69 8.89 25.60 0.23 -27.46 16 14 H 0.07 3.63 7.81 -2.91 -0.02 3.61 16 15 C 0.03 1.26 5.29 84.66 0.45 1.71 16 16 N -0.91 -47.56 11.29 21.45 0.24 -47.31 16 17 Si 0.98 39.78 29.54 68.60 2.03 41.81 16 18 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 19 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 20 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 21 C -0.03 -1.22 6.17 71.98 0.44 -0.78 16 22 Cl -0.22 -9.06 25.60 -2.72 -0.07 -9.13 16 23 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 24 H 0.10 1.50 8.08 -2.39 -0.02 1.48 16 25 H 0.05 1.46 7.52 -2.39 -0.02 1.45 16 26 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 27 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 28 H 0.11 4.93 5.10 -2.91 -0.01 4.92 16 29 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 30 H 0.11 5.57 5.95 -2.39 -0.01 5.56 16 31 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -57.38 286.99 6.62 -50.76 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 1.16 Total: 10.41 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: 3.72 Total: -15.47 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: 0.59 Total: -64.14 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.81 Total: -14.24 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Atomic # 17 Polarization: -9.06 SS G_CDS: -0.07 Total: -9.13 kcal Total: -57.38 6.62 -50.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226877831.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.313 kcal (2) G-P(sol) polarization free energy of solvation -57.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds